RNA–Protein interactions for RNA: ENST00000527253.2

PRPF40B-204, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 3

Gene PRPF40B, Length 742 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-204ENST00000527253 PLCB4Q15147 1175 aa11.9□□□□□ -0.5
PRPF40B-204ENST00000527253 GRIK4Q16099 956 aa11.9□□□□□ -0.5
PRPF40B-204ENST00000527253 NIPA1Q7RTP0 329 aa11.9□□□□□ -0.5
PRPF40B-204ENST00000527253 PLA2G4DQ86XP0 818 aa11.9□□□□□ -0.5
PRPF40B-204ENST00000527253 GLG1Q92896 1179 aa11.9□□□□□ -0.5
PRPF40B-204ENST00000527253 COL25A1Q9BXS0 654 aaPredicted RBP11.9□□□□□ -0.5
PRPF40B-204ENST00000527253 RNF26Q9BY78 433 aaPredicted RBP11.9□□□□□ -0.5
PRPF40B-204ENST00000527253 C6orf50Q9HD87 102 aa11.9□□□□□ -0.5
PRPF40B-204ENST00000527253 ERAP1Q9NZ08 941 aa11.9□□□□□ -0.5
PRPF40B-204ENST00000527253 VPS54Q9P1Q0 977 aa11.9□□□□□ -0.5
PRPF40B-204ENST00000527253 CYP46A1Q9Y6A2 500 aa11.9□□□□□ -0.5
PRPF40B-204ENST00000527253 EYSQ5T1H1 3165 aa11.9□□□□□ -0.5
PRPF40B-204ENST00000527253 PRUNE2Q8WUY3 3088 aa11.9□□□□□ -0.51
PRPF40B-204ENST00000527253 IGKV6D-21A0A0A0MT36 114 aa11.89□□□□□ -0.51
PRPF40B-204ENST00000527253 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.89□□□□□ -0.51
PRPF40B-204ENST00000527253 DDX39AO00148 427 aaKnown RBP11.89□□□□□ -0.51
PRPF40B-204ENST00000527253 TLL1O43897 1013 aa11.89□□□□□ -0.51
PRPF40B-204ENST00000527253 DTNBO60941 627 aa11.89□□□□□ -0.51
PRPF40B-204ENST00000527253 CAND2O75155 1236 aa11.89□□□□□ -0.51
PRPF40B-204ENST00000527253 GJB5O95377 273 aa11.89□□□□□ -0.51
PRPF40B-204ENST00000527253 INSRRP14616 1297 aa11.89□□□□□ -0.51
PRPF40B-204ENST00000527253 ZNF76P36508 570 aa11.89□□□□□ -0.51
PRPF40B-204ENST00000527253 CCDC85BQ15834 202 aaPredicted RBP11.89□□□□□ -0.51
PRPF40B-204ENST00000527253 ERICH6BQ5W0A0 696 aa11.89□□□□□ -0.51
PRPF40B-204ENST00000527253 KRT40Q6A162 431 aa11.89□□□□□ -0.51
PRPF40B-204ENST00000527253 FAM117BQ6P1L5 589 aa11.89□□□□□ -0.51
PRPF40B-204ENST00000527253 ABHD15Q6UXT9 468 aa11.89□□□□□ -0.51
PRPF40B-204ENST00000527253 PLPPR4Q7Z2D5 763 aa11.89□□□□□ -0.51
PRPF40B-204ENST00000527253 RPAINQ86UA6 219 aa11.89□□□□□ -0.51
PRPF40B-204ENST00000527253 REXO1Q8N1G1 1221 aaKnown RBP11.89□□□□□ -0.51
PRPF40B-204ENST00000527253 TRAPPC12Q8WVT3 735 aa11.89□□□□□ -0.51
PRPF40B-204ENST00000527253 DNAJB3Q8WWF6 145 aa11.89□□□□□ -0.51
PRPF40B-204ENST00000527253 ZNF274Q96GC6 653 aaPredicted RBP11.89□□□□□ -0.51
PRPF40B-204ENST00000527253 AIFM3Q96NN9 605 aa11.89□□□□□ -0.51
PRPF40B-204ENST00000527253 SDF4Q9BRK5 362 aa11.89□□□□□ -0.51
PRPF40B-204ENST00000527253 PDRG1Q9NUG6 133 aa11.89□□□□□ -0.51
PRPF40B-204ENST00000527253 UNC80Q8N2C7 3258 aa11.89□□□□□ -0.51
PRPF40B-204ENST00000527253 MICAL3Q7RTP6 2002 aa11.88□□□□□ -0.51
PRPF40B-204ENST00000527253 KIF28PB7ZC32 967 aa11.88□□□□□ -0.51
PRPF40B-204ENST00000527253 LPXNO60711 386 aa11.88□□□□□ -0.51
PRPF40B-204ENST00000527253 ATP4AP20648 1035 aa11.88□□□□□ -0.51
PRPF40B-204ENST00000527253 CIITAP33076 1130 aa11.88□□□□□ -0.51
PRPF40B-204ENST00000527253 STAT5BP51692 787 aa11.88□□□□□ -0.51
PRPF40B-204ENST00000527253 IGBP1P78318 339 aa11.88□□□□□ -0.51
PRPF40B-204ENST00000527253 AKAP17AQ02040 695 aaKnown RBP11.88□□□□□ -0.51
PRPF40B-204ENST00000527253 STK3Q13188 491 aa11.88□□□□□ -0.51
PRPF40B-204ENST00000527253 ARNTL2Q8WYA1 636 aa11.88□□□□□ -0.51
PRPF40B-204ENST00000527253 SEPT8Q92599 483 aa11.88□□□□□ -0.51
PRPF40B-204ENST00000527253 LENG9Q96B70 501 aa11.88□□□□□ -0.51
PRPF40B-204ENST00000527253 RAD9AQ99638 391 aa11.88□□□□□ -0.51
PRPF40B-204ENST00000527253 TUBE1Q9UJT0 475 aa11.88□□□□□ -0.51
PRPF40B-204ENST00000527253 MTCH2Q9Y6C9 303 aa11.88□□□□□ -0.51
PRPF40B-204ENST00000527253 IPO5O00410 1097 aaKnown RBP11.87□□□□□ -0.51
PRPF40B-204ENST00000527253 EFCAB14O75071 495 aa11.87□□□□□ -0.51
PRPF40B-204ENST00000527253 GHRP10912 638 aa11.87□□□□□ -0.51
PRPF40B-204ENST00000527253 POU3F3P20264 500 aaPredicted RBP11.87□□□□□ -0.51
PRPF40B-204ENST00000527253 GNA11P29992 359 aa11.87□□□□□ -0.51
PRPF40B-204ENST00000527253 GRB10Q13322 594 aa11.87□□□□□ -0.51
PRPF40B-204ENST00000527253 LPIN1Q14693 890 aa11.87□□□□□ -0.51
PRPF40B-204ENST00000527253 NPY5RQ15761 445 aa11.87□□□□□ -0.51
PRPF40B-204ENST00000527253 TAF2Q6P1X5 1199 aa11.87□□□□□ -0.51
PRPF40B-204ENST00000527253 CCDC60Q8IWA6 550 aaPredicted RBP11.87□□□□□ -0.51
PRPF40B-204ENST00000527253 CCDC12Q8WUD4 166 aaPredicted RBP11.87□□□□□ -0.51
PRPF40B-204ENST00000527253 ZBED2Q9BTP6 218 aa11.87□□□□□ -0.51
PRPF40B-204ENST00000527253 AZI2Q9H6S1 392 aa11.87□□□□□ -0.51
PRPF40B-204ENST00000527253 SH3GLB2Q9NR46 395 aa11.87□□□□□ -0.51
PRPF40B-204ENST00000527253 TPCN1Q9ULQ1 816 aa11.87□□□□□ -0.51
PRPF40B-204ENST00000527253 TRPC6Q9Y210 931 aa11.87□□□□□ -0.51
PRPF40B-204ENST00000527253 SIP14410 1827 aa11.86□□□□□ -0.51
PRPF40B-204ENST00000527253 POTEB3A0JP26 581 aa11.86□□□□□ -0.51
PRPF40B-204ENST00000527253 LINC01553A4QN01 128 aa11.86□□□□□ -0.51
PRPF40B-204ENST00000527253 RRN3P2A6NIE6 340 aa11.86□□□□□ -0.51
PRPF40B-204ENST00000527253 M0R2N6 131 aa11.86□□□□□ -0.51
PRPF40B-204ENST00000527253 SEC24BO95487 1268 aa11.86□□□□□ -0.51
PRPF40B-204ENST00000527253 AMHP03971 560 aa11.86□□□□□ -0.51
PRPF40B-204ENST00000527253 ERVK-21P61565 698 aa11.86□□□□□ -0.51
PRPF40B-204ENST00000527253 HTRA4P83105 476 aaPredicted RBP11.86□□□□□ -0.51
PRPF40B-204ENST00000527253 SSRP1Q08945 709 aaKnown RBP11.86□□□□□ -0.51
PRPF40B-204ENST00000527253 SCRN1Q12765 414 aa11.86□□□□□ -0.51
PRPF40B-204ENST00000527253 PRR16Q569H4 304 aa11.86□□□□□ -0.51
PRPF40B-204ENST00000527253 MCTP2Q6DN12 878 aa11.86□□□□□ -0.51
PRPF40B-204ENST00000527253 SWSAP1Q6NVH7 229 aa11.86□□□□□ -0.51
PRPF40B-204ENST00000527253 POTEBQ6S5H4 581 aa11.86□□□□□ -0.51
PRPF40B-204ENST00000527253 MTHFD1LQ6UB35 978 aa11.86□□□□□ -0.51
PRPF40B-204ENST00000527253 MYOCDQ8IZQ8 938 aa11.86□□□□□ -0.51
PRPF40B-204ENST00000527253 GJA10Q969M2 543 aa11.86□□□□□ -0.51
PRPF40B-204ENST00000527253 TOP1MTQ969P6 601 aa11.86□□□□□ -0.51
PRPF40B-204ENST00000527253 ZNF577Q9BSK1 485 aa11.86□□□□□ -0.51
PRPF40B-204ENST00000527253 FAM49AQ9H0Q0 323 aaPredicted RBP11.86□□□□□ -0.51
PRPF40B-204ENST00000527253 AGO3Q9H9G7 860 aaKnown RBP11.86□□□□□ -0.51
PRPF40B-204ENST00000527253 PCDHA2Q9Y5H9 948 aa11.86□□□□□ -0.51
PRPF40B-204ENST00000527253 CDY2AQ9Y6F7 541 aa11.86□□□□□ -0.51
PRPF40B-204ENST00000527253 ZBTB42B2RXF5 422 aa11.85□□□□□ -0.51
PRPF40B-204ENST00000527253 BACH1O14867 736 aa11.85□□□□□ -0.51
PRPF40B-204ENST00000527253 MSH4O15457 936 aa11.85□□□□□ -0.51
PRPF40B-204ENST00000527253 CTDNEP1O95476 244 aa11.85□□□□□ -0.51
PRPF40B-204ENST00000527253 NLRP5P59047 1200 aa11.85□□□□□ -0.51
PRPF40B-204ENST00000527253 MRPS6P82932 125 aaKnown RBP11.85□□□□□ -0.51
PRPF40B-204ENST00000527253 TMEM62Q0P6H9 643 aa11.85□□□□□ -0.51
PRPF40B-204ENST00000527253 FBXO47Q5MNV8 452 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms