RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 IER5LQ5T953 404 aa7.56□□□□□ -1.2
CD44-221ENST00000526000 PCNX4Q63HM2 1172 aa7.56□□□□□ -1.2
CD44-221ENST00000526000 RSPH3Q86UC2 560 aa7.56□□□□□ -1.2
CD44-221ENST00000526000 RNF135Q8IUD6 432 aa7.56□□□□□ -1.2
CD44-221ENST00000526000 ADHFE1Q8IWW8 467 aa7.56□□□□□ -1.2
CD44-221ENST00000526000 SAMD3Q8N6K7 520 aa7.56□□□□□ -1.2
CD44-221ENST00000526000 CTCFLQ8NI51 663 aaPredicted RBP7.56□□□□□ -1.2
CD44-221ENST00000526000 CYP2W1Q8TAV3 490 aa7.56□□□□□ -1.2
CD44-221ENST00000526000 SPPL3Q8TCT6 385 aa7.56□□□□□ -1.2
CD44-221ENST00000526000 LINC01599Q8WXQ3 324 aa7.56□□□□□ -1.2
CD44-221ENST00000526000 APBB2Q92870 758 aa7.56□□□□□ -1.2
CD44-221ENST00000526000 C11orf84Q9BUA3 381 aaPredicted RBP7.56□□□□□ -1.2
CD44-221ENST00000526000 APOL5Q9BWW9 433 aa7.56□□□□□ -1.2
CD44-221ENST00000526000 UPF3BQ9BZI7 483 aaKnown RBP7.56□□□□□ -1.2
CD44-221ENST00000526000 PSTPIP2Q9H939 334 aa7.56□□□□□ -1.2
CD44-221ENST00000526000 EHMT1Q9H9B1 1298 aa7.56□□□□□ -1.2
CD44-221ENST00000526000 CDHR5Q9HBB8 845 aa7.56□□□□□ -1.2
CD44-221ENST00000526000 CD207Q9UJ71 328 aa7.56□□□□□ -1.2
CD44-221ENST00000526000 FAM50BQ9Y247 325 aa7.56□□□□□ -1.2
CD44-221ENST00000526000 NRCAMQ92823 1304 aa7.55□□□□□ -1.2
CD44-221ENST00000526000 C19orf67A6NJJ6 358 aa7.55□□□□□ -1.2
CD44-221ENST00000526000 DDX39AO00148 427 aaKnown RBP7.55□□□□□ -1.2
CD44-221ENST00000526000 PRC1O43663 620 aa7.55□□□□□ -1.2
CD44-221ENST00000526000 TBX10O75333 385 aa7.55□□□□□ -1.2
CD44-221ENST00000526000 DGKIO75912 1065 aa7.55□□□□□ -1.2
CD44-221ENST00000526000 ITGB1P05556 798 aa7.55□□□□□ -1.2
CD44-221ENST00000526000 LINC00271P0C7V0 271 aa7.55□□□□□ -1.2
CD44-221ENST00000526000 ARP10275 920 aa7.55□□□□□ -1.2
CD44-221ENST00000526000 KCNA2P16389 499 aa7.55□□□□□ -1.2
CD44-221ENST00000526000 SP100P23497 879 aaPredicted RBP7.55□□□□□ -1.2
CD44-221ENST00000526000 MRPS6P82932 125 aaKnown RBP7.55□□□□□ -1.2
CD44-221ENST00000526000 SART3Q15020 963 aaKnown RBP7.55□□□□□ -1.2
CD44-221ENST00000526000 TTC22Q5TAA0 569 aa7.55□□□□□ -1.2
CD44-221ENST00000526000 ZNF654Q8IZM8 581 aa7.55□□□□□ -1.2
CD44-221ENST00000526000 KLHL23Q8NBE8 558 aa7.55□□□□□ -1.2
CD44-221ENST00000526000 POF1BQ8WVV4 589 aa7.55□□□□□ -1.2
CD44-221ENST00000526000 RUFY2Q8WXA3 655 aa7.55□□□□□ -1.2
CD44-221ENST00000526000 PBXIP1Q96AQ6 731 aa7.55□□□□□ -1.2
CD44-221ENST00000526000 RPGRIP1Q96KN7 1286 aa7.55□□□□□ -1.2
CD44-221ENST00000526000 PCYT2Q99447 389 aa7.55□□□□□ -1.2
CD44-221ENST00000526000 SMARCAD1Q9H4L7 1026 aa7.55□□□□□ -1.2
CD44-221ENST00000526000 HCSTQ9UBK5 93 aa7.55□□□□□ -1.2
CD44-221ENST00000526000 SEC63Q9UGP8 760 aaKnown RBP7.55□□□□□ -1.2
CD44-221ENST00000526000 TUBE1Q9UJT0 475 aa7.55□□□□□ -1.2
CD44-221ENST00000526000 LRFN2Q9ULH4 789 aa7.55□□□□□ -1.2
CD44-221ENST00000526000 PADI3Q9ULW8 664 aa7.55□□□□□ -1.2
CD44-221ENST00000526000 BARX2Q9UMQ3 279 aaPredicted RBP7.55□□□□□ -1.2
CD44-221ENST00000526000 PCDHA6Q9UN73 950 aa7.55□□□□□ -1.2
CD44-221ENST00000526000 TRPC6Q9Y210 931 aa7.55□□□□□ -1.2
CD44-221ENST00000526000 ARIH1Q9Y4X5 557 aaPredicted RBP7.55□□□□□ -1.2
CD44-221ENST00000526000 PCDHA8Q9Y5H6 950 aa7.55□□□□□ -1.2
CD44-221ENST00000526000 ADGRA3Q8IWK6 1321 aa7.54□□□□□ -1.2
CD44-221ENST00000526000 CCDC69A6NI79 296 aa7.54□□□□□ -1.2
CD44-221ENST00000526000 CAND2O75155 1236 aa7.54□□□□□ -1.2
CD44-221ENST00000526000 STAM2O75886 525 aa7.54□□□□□ -1.2
CD44-221ENST00000526000 NT5C2P49902 561 aa7.54□□□□□ -1.2
CD44-221ENST00000526000 APOBRQ0VD83 1088 aa7.54□□□□□ -1.2
CD44-221ENST00000526000 PLCB4Q15147 1175 aa7.54□□□□□ -1.2
CD44-221ENST00000526000 SMAD2Q15796 467 aaKnown RBP7.54□□□□□ -1.2
CD44-221ENST00000526000 CTC1Q2NKJ3 1217 aa7.54□□□□□ -1.2
CD44-221ENST00000526000 FAM102BQ5T8I3 360 aa7.54□□□□□ -1.2
CD44-221ENST00000526000 TAF2Q6P1X5 1199 aa7.54□□□□□ -1.2
CD44-221ENST00000526000 CASC1Q6TDU7 716 aa7.54□□□□□ -1.2
CD44-221ENST00000526000 HEATR3Q7Z4Q2 680 aa7.54□□□□□ -1.2
CD44-221ENST00000526000 MB21D2Q8IYB1 491 aaPredicted RBP7.54□□□□□ -1.2
CD44-221ENST00000526000 ZNF689Q96CS4 500 aaPredicted RBP7.54□□□□□ -1.2
CD44-221ENST00000526000 ZNF668Q96K58 619 aaPredicted RBP7.54□□□□□ -1.2
CD44-221ENST00000526000 SENP7Q9BQF6 1050 aa7.54□□□□□ -1.2
CD44-221ENST00000526000 LMAN2LQ9H0V9 348 aa7.54□□□□□ -1.2
CD44-221ENST00000526000 TLE6Q9H808 572 aa7.54□□□□□ -1.2
CD44-221ENST00000526000 LY9Q9HBG7 655 aa7.54□□□□□ -1.2
CD44-221ENST00000526000 FAM86C1Q9NVL1 165 aa7.54□□□□□ -1.2
CD44-221ENST00000526000 TMEM260Q9NX78 707 aa7.54□□□□□ -1.2
CD44-221ENST00000526000 ERAP1Q9NZ08 941 aa7.54□□□□□ -1.2
CD44-221ENST00000526000 CLEC1BQ9P126 229 aa7.54□□□□□ -1.2
CD44-221ENST00000526000 PRKAG3Q9UGI9 489 aa7.54□□□□□ -1.2
CD44-221ENST00000526000 RBM8AQ9Y5S9 174 aaKnown RBP7.54□□□□□ -1.2
CD44-221ENST00000526000 UBIAD1Q9Y5Z9 338 aa7.54□□□□□ -1.2
CD44-221ENST00000526000 RRN3P2A6NIE6 340 aa7.53□□□□□ -1.2
CD44-221ENST00000526000 SPDYE3A6NKU9 549 aa7.53□□□□□ -1.2
CD44-221ENST00000526000 TBKBP1A7MCY6 615 aa7.53□□□□□ -1.2
CD44-221ENST00000526000 C5orf67F2Z3F1 127 aa7.53□□□□□ -1.2
CD44-221ENST00000526000 NCK2O43639 380 aa7.53□□□□□ -1.2
CD44-221ENST00000526000 MGEA5O60502 916 aa7.53□□□□□ -1.2
CD44-221ENST00000526000 KLRC1P26715 233 aa7.53□□□□□ -1.2
CD44-221ENST00000526000 KIF5BP33176 963 aa7.53□□□□□ -1.2
CD44-221ENST00000526000 ZNF76P36508 570 aa7.53□□□□□ -1.2
CD44-221ENST00000526000 ERVFC1P60507 584 aa7.53□□□□□ -1.2
CD44-221ENST00000526000 PAK2Q13177 524 aa7.53□□□□□ -1.2
CD44-221ENST00000526000 SMAD4Q13485 552 aaKnown RBP7.53□□□□□ -1.2
CD44-221ENST00000526000 MTMR1Q13613 665 aa7.53□□□□□ -1.2
CD44-221ENST00000526000 IER5Q5VY09 327 aa7.53□□□□□ -1.2
CD44-221ENST00000526000 LLGL2Q6P1M3 1020 aa7.53□□□□□ -1.2
CD44-221ENST00000526000 XRRA1Q6P2D8 792 aa7.53□□□□□ -1.2
CD44-221ENST00000526000 TSHZ1Q6ZSZ6 1077 aa7.53□□□□□ -1.2
CD44-221ENST00000526000 GIMAP8Q8ND71 665 aaPredicted RBP7.53□□□□□ -1.2
CD44-221ENST00000526000 EDAQ92838 391 aa7.53□□□□□ -1.2
CD44-221ENST00000526000 CLP1Q92989 425 aaKnown RBP7.53□□□□□ -1.2
CD44-221ENST00000526000 GPRASP2Q96D09 838 aa7.53□□□□□ -1.2
CD44-221ENST00000526000 MFSD14AQ96MC6 490 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms