RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 ZFYVE27Q5T4F4 411 aa6.06□□□□□ -1.44
CD44-217ENST00000525348 TRMT10BQ6PF06 316 aaKnown RBP6.06□□□□□ -1.44
CD44-217ENST00000525348 NLGN4XQ8N0W4 816 aa6.06□□□□□ -1.44
CD44-217ENST00000525348 STPG3Q8N7X2 389 aa6.06□□□□□ -1.44
CD44-217ENST00000525348 NUDT10Q8NFP7 164 aa6.06□□□□□ -1.44
CD44-217ENST00000525348 CXorf38Q8TB03 319 aa6.06□□□□□ -1.44
CD44-217ENST00000525348 NUDT11Q96G61 164 aa6.06□□□□□ -1.44
CD44-217ENST00000525348 KCND1Q9NSA2 647 aa6.06□□□□□ -1.44
CD44-217ENST00000525348 MROH6A6NGR9 719 aa6.05□□□□□ -1.44
CD44-217ENST00000525348 GSTA4O15217 222 aa6.05□□□□□ -1.44
CD44-217ENST00000525348 CLASP2O75122 1294 aaKnown RBP6.05□□□□□ -1.44
CD44-217ENST00000525348 KLHL18O94889 574 aa6.05□□□□□ -1.44
CD44-217ENST00000525348 ASMTLO95671 621 aa6.05□□□□□ -1.44
CD44-217ENST00000525348 KNG1P01042 644 aa6.05□□□□□ -1.44
CD44-217ENST00000525348 ENO2P09104 434 aaPredicted RBP6.05□□□□□ -1.44
CD44-217ENST00000525348 SDSP20132 328 aa6.05□□□□□ -1.44
CD44-217ENST00000525348 MC4RP32245 332 aa6.05□□□□□ -1.44
CD44-217ENST00000525348 FNDC3BQ53EP0 1204 aaKnown RBP6.05□□□□□ -1.44
CD44-217ENST00000525348 TMEM177Q53S58 311 aa6.05□□□□□ -1.44
CD44-217ENST00000525348 IGDCC4Q8TDY8 1250 aa6.05□□□□□ -1.44
CD44-217ENST00000525348 WRNIP1Q96S55 665 aa6.05□□□□□ -1.44
CD44-217ENST00000525348 KRTAP4-7Q9BYR0 210 aa6.05□□□□□ -1.44
CD44-217ENST00000525348 L2HGDHQ9H9P8 463 aa6.05□□□□□ -1.44
CD44-217ENST00000525348 BTBD7Q9P203 1132 aa6.05□□□□□ -1.44
CD44-217ENST00000525348 ARHGAP20Q9P2F6 1191 aa6.05□□□□□ -1.44
CD44-217ENST00000525348 TNPO3Q9Y5L0 923 aaKnown RBP6.05□□□□□ -1.44
CD44-217ENST00000525348 RASSF10A6NK89 507 aa6.04□□□□□ -1.44
CD44-217ENST00000525348 B4GALT3O60512 393 aa6.04□□□□□ -1.44
CD44-217ENST00000525348 MPIG6BO95866 241 aa6.04□□□□□ -1.44
CD44-217ENST00000525348 MECP2P51608 486 aaKnown RBP6.04□□□□□ -1.44
CD44-217ENST00000525348 SMAD2Q15796 467 aaKnown RBP6.04□□□□□ -1.44
CD44-217ENST00000525348 SKOR2Q2VWA4 1001 aaPredicted RBP6.04□□□□□ -1.44
CD44-217ENST00000525348 JAZF1Q86VZ6 243 aa6.04□□□□□ -1.44
CD44-217ENST00000525348 TACO1Q9BSH4 297 aaKnown RBP6.04□□□□□ -1.44
CD44-217ENST00000525348 NCANO14594 1321 aa6.03□□□□□ -1.44
CD44-217ENST00000525348 PRAMEF25A6NGN4 478 aa6.03□□□□□ -1.44
CD44-217ENST00000525348 C9orf118A6NHY6 69 aa6.03□□□□□ -1.44
CD44-217ENST00000525348 B8ZZF3 427 aa6.03□□□□□ -1.44
CD44-217ENST00000525348 SCDO00767 359 aa6.03□□□□□ -1.44
CD44-217ENST00000525348 GLRX3O76003 335 aaKnown RBP6.03□□□□□ -1.44
CD44-217ENST00000525348 CYP1A1P04798 512 aaPredicted RBP6.03□□□□□ -1.44
CD44-217ENST00000525348 AOAHP28039 575 aa6.03□□□□□ -1.44
CD44-217ENST00000525348 GJA4P35212 333 aa6.03□□□□□ -1.44
CD44-217ENST00000525348 TKFCQ3LXA3 575 aa6.03□□□□□ -1.44
CD44-217ENST00000525348 UBXN11Q5T124 520 aa6.03□□□□□ -1.44
CD44-217ENST00000525348 ZCCHC8Q6NZY4 707 aaKnown RBP6.03□□□□□ -1.44
CD44-217ENST00000525348 DLG3Q92796 817 aa6.03□□□□□ -1.44
CD44-217ENST00000525348 LCORQ96JN0 433 aaPredicted RBP6.03□□□□□ -1.44
CD44-217ENST00000525348 BDH2Q9BUT1 245 aa6.03□□□□□ -1.44
CD44-217ENST00000525348 TMEM168Q9H0V1 697 aa6.03□□□□□ -1.44
CD44-217ENST00000525348 INVSQ9Y283 1065 aa6.03□□□□□ -1.44
CD44-217ENST00000525348 M0R2C6 588 aa6.02□□□□□ -1.45
CD44-217ENST00000525348 PRRG2O14669 202 aa6.02□□□□□ -1.45
CD44-217ENST00000525348 CYP7B1O75881 506 aa6.02□□□□□ -1.45
CD44-217ENST00000525348 MMEP08473 750 aa6.02□□□□□ -1.45
CD44-217ENST00000525348 ZBTB48P10074 688 aaPredicted RBP6.02□□□□□ -1.45
CD44-217ENST00000525348 SYN1P17600 705 aa6.02□□□□□ -1.45
CD44-217ENST00000525348 PABPC4Q13310 644 aaKnown RBP eCLIP6.02□□□□□ -1.45
CD44-217ENST00000525348 C21orf62-AS1Q17RA5 79 aa6.02□□□□□ -1.45
CD44-217ENST00000525348 PKN3Q6P5Z2 889 aa6.02□□□□□ -1.45
CD44-217ENST00000525348 AMNQ9BXJ7 453 aa6.02□□□□□ -1.45
CD44-217ENST00000525348 FTSJ1Q9UET6 329 aa6.02□□□□□ -1.45
CD44-217ENST00000525348 CD2APQ9Y5K6 639 aa6.02□□□□□ -1.45
CD44-217ENST00000525348 B3GALT1Q9Y5Z6 326 aa6.02□□□□□ -1.45
CD44-217ENST00000525348 MRPL42Q9Y6G3 142 aaKnown RBP6.02□□□□□ -1.45
CD44-217ENST00000525348 SLC12A8A0AV02 714 aa6.01□□□□□ -1.45
CD44-217ENST00000525348 FAM83GA6ND36 823 aa6.01□□□□□ -1.45
CD44-217ENST00000525348 TRAF5O00463 557 aa6.01□□□□□ -1.45
CD44-217ENST00000525348 FBXO21O94952 628 aa6.01□□□□□ -1.45
CD44-217ENST00000525348 NPTXRO95502 500 aa6.01□□□□□ -1.45
CD44-217ENST00000525348 ASLP04424 464 aa6.01□□□□□ -1.45
CD44-217ENST00000525348 PTGS1P23219 599 aa6.01□□□□□ -1.45
CD44-217ENST00000525348 IGFALSP35858 605 aa6.01□□□□□ -1.45
CD44-217ENST00000525348 BUD31P41223 144 aaPredicted RBP6.01□□□□□ -1.45
CD44-217ENST00000525348 HERVK_113P62684 666 aa6.01□□□□□ -1.45
CD44-217ENST00000525348 TBC1D10BQ4KMP7 808 aaPredicted RBP6.01□□□□□ -1.45
CD44-217ENST00000525348 EP400NLQ6ZTU2 488 aa6.01□□□□□ -1.45
CD44-217ENST00000525348 OTOP1Q7RTM1 612 aa6.01□□□□□ -1.45
CD44-217ENST00000525348 ASB15Q8WXK1 588 aa6.01□□□□□ -1.45
CD44-217ENST00000525348 FANCLQ9NW38 375 aa6.01□□□□□ -1.45
CD44-217ENST00000525348 SAMD15Q9P1V8 674 aa6.01□□□□□ -1.45
CD44-217ENST00000525348 ARHGAP28Q9P2N2 729 aa6.01□□□□□ -1.45
CD44-217ENST00000525348 DVL2O14641 736 aa6□□□□□ -1.45
CD44-217ENST00000525348 OPA1O60313 960 aa6□□□□□ -1.45
CD44-217ENST00000525348 RFPL3O75679 317 aa6□□□□□ -1.45
CD44-217ENST00000525348 CHGBP05060 677 aa6□□□□□ -1.45
CD44-217ENST00000525348 KRTAP10-2P60368 255 aa6□□□□□ -1.45
CD44-217ENST00000525348 IL13RA1P78552 427 aa6□□□□□ -1.45
CD44-217ENST00000525348 KIAA2012Q0VF49 1180 aa6□□□□□ -1.45
CD44-217ENST00000525348 NFATC3Q12968 1075 aa6□□□□□ -1.45
CD44-217ENST00000525348 CATSPEREQ5SY80 951 aa6□□□□□ -1.45
CD44-217ENST00000525348 LRSAM1Q6UWE0 723 aa6□□□□□ -1.45
CD44-217ENST00000525348 Q6ZUG5 572 aa6□□□□□ -1.45
CD44-217ENST00000525348 LGI4Q8N135 537 aa6□□□□□ -1.45
CD44-217ENST00000525348 KLHL36Q8N4N3 616 aa6□□□□□ -1.45
CD44-217ENST00000525348 C2orf69Q8N8R5 385 aa6□□□□□ -1.45
CD44-217ENST00000525348 RBM15Q96T37 977 aaKnown RBP eCLIP6□□□□□ -1.45
CD44-217ENST00000525348 KCNH7Q9NS40 1196 aa6□□□□□ -1.45
CD44-217ENST00000525348 ADAM29Q9UKF5 820 aa6□□□□□ -1.45
CD44-217ENST00000525348 PTPN22Q9Y2R2 807 aa6□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms