RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 SPATA6Q9NWH7 488 aaPredicted RBP6.24□□□□□ -1.41
CD44-215ENST00000525241 PRAMEF25A6NGN4 478 aa6.23□□□□□ -1.41
CD44-215ENST00000525241 RASSF10A6NK89 507 aa6.23□□□□□ -1.41
CD44-215ENST00000525241 RFXAPO00287 272 aa6.23□□□□□ -1.41
CD44-215ENST00000525241 HIP1RO75146 1068 aa6.23□□□□□ -1.41
CD44-215ENST00000525241 HERVK_113P62684 666 aa6.23□□□□□ -1.41
CD44-215ENST00000525241 PFKPQ01813 784 aa6.23□□□□□ -1.41
CD44-215ENST00000525241 SMAD4Q13485 552 aaKnown RBP6.23□□□□□ -1.41
CD44-215ENST00000525241 RTP5Q14D33 572 aa6.23□□□□□ -1.41
CD44-215ENST00000525241 VWA3BQ502W6 1294 aa6.23□□□□□ -1.41
CD44-215ENST00000525241 KRT26Q7Z3Y9 468 aa6.23□□□□□ -1.41
CD44-215ENST00000525241 UBR7Q8N806 425 aa6.23□□□□□ -1.41
CD44-215ENST00000525241 DTX3Q8N9I9 347 aa6.23□□□□□ -1.41
CD44-215ENST00000525241 ZBTB8AQ96BR9 441 aa6.23□□□□□ -1.41
CD44-215ENST00000525241 TMEM209Q96SK2 561 aa6.23□□□□□ -1.41
CD44-215ENST00000525241 IRF2BPLQ9H1B7 796 aa6.23□□□□□ -1.41
CD44-215ENST00000525241 ZKSCAN5Q9Y2L8 839 aa6.23□□□□□ -1.41
CD44-215ENST00000525241 DBX1A6NMT0 343 aa6.22□□□□□ -1.41
CD44-215ENST00000525241 ZNF839A8K0R7 811 aa6.22□□□□□ -1.41
CD44-215ENST00000525241 FFAR3O14843 346 aa6.22□□□□□ -1.41
CD44-215ENST00000525241 MMEP08473 750 aa6.22□□□□□ -1.41
CD44-215ENST00000525241 ENO2P09104 434 aaPredicted RBP6.22□□□□□ -1.41
CD44-215ENST00000525241 CFPP27918 469 aa6.22□□□□□ -1.41
CD44-215ENST00000525241 AOAHP28039 575 aa6.22□□□□□ -1.41
CD44-215ENST00000525241 SDHAP31040 664 aa6.22□□□□□ -1.41
CD44-215ENST00000525241 SCNN1BP51168 640 aa6.22□□□□□ -1.41
CD44-215ENST00000525241 AFF3P51826 1226 aaKnown RBP6.22□□□□□ -1.41
CD44-215ENST00000525241 KIF11P52732 1056 aa6.22□□□□□ -1.41
CD44-215ENST00000525241 TMEM132BQ14DG7 1078 aa6.22□□□□□ -1.41
CD44-215ENST00000525241 CATSPEREQ5SY80 951 aa6.22□□□□□ -1.41
CD44-215ENST00000525241 VASNQ6EMK4 673 aa6.22□□□□□ -1.41
CD44-215ENST00000525241 CC2D1AQ6P1N0 951 aaPredicted RBP6.22□□□□□ -1.41
CD44-215ENST00000525241 SAPCD2Q86UD0 394 aa6.22□□□□□ -1.41
CD44-215ENST00000525241 C1QL4Q86Z23 238 aa6.22□□□□□ -1.41
CD44-215ENST00000525241 FAM177A1Q8N128 213 aaPredicted RBP6.22□□□□□ -1.41
CD44-215ENST00000525241 TTLL6Q8N841 843 aa6.22□□□□□ -1.41
CD44-215ENST00000525241 SMC1BQ8NDV3 1235 aa6.22□□□□□ -1.41
CD44-215ENST00000525241 CHAC2Q8WUX2 184 aa6.22□□□□□ -1.41
CD44-215ENST00000525241 TMX1Q9H3N1 280 aa6.22□□□□□ -1.41
CD44-215ENST00000525241 SLC39A2Q9NP94 309 aa6.22□□□□□ -1.41
CD44-215ENST00000525241 IFT57Q9NWB7 429 aa6.22□□□□□ -1.41
CD44-215ENST00000525241 OXSMQ9NWU1 459 aa6.22□□□□□ -1.41
CD44-215ENST00000525241 H2AFY2Q9P0M6 372 aaPredicted RBP6.22□□□□□ -1.41
CD44-215ENST00000525241 BTBD7Q9P203 1132 aa6.22□□□□□ -1.41
CD44-215ENST00000525241 H7C1D1 291 aa6.21□□□□□ -1.42
CD44-215ENST00000525241 FOXP2O15409 715 aa6.21□□□□□ -1.42
CD44-215ENST00000525241 NUAK1O60285 661 aa6.21□□□□□ -1.42
CD44-215ENST00000525241 GAS7O60861 476 aa6.21□□□□□ -1.42
CD44-215ENST00000525241 SKIDA1Q1XH10 827 aa6.21□□□□□ -1.42
CD44-215ENST00000525241 PRR31Q5SQ13 230 aa6.21□□□□□ -1.42
CD44-215ENST00000525241 CIAPIN1Q6FI81 312 aa6.21□□□□□ -1.42
CD44-215ENST00000525241 DDX46Q7L014 1031 aaKnown RBP6.21□□□□□ -1.42
CD44-215ENST00000525241 STRA8Q7Z7C7 330 aa6.21□□□□□ -1.42
CD44-215ENST00000525241 KIAA1958Q8N8K9 716 aa6.21□□□□□ -1.42
CD44-215ENST00000525241 OR2W6PQ8NHA6 318 aa6.21□□□□□ -1.42
CD44-215ENST00000525241 IGDCC4Q8TDY8 1250 aa6.21□□□□□ -1.42
CD44-215ENST00000525241 ZNF526Q8TF50 670 aaPredicted RBP6.21□□□□□ -1.42
CD44-215ENST00000525241 CHTF18Q8WVB6 975 aa6.21□□□□□ -1.42
CD44-215ENST00000525241 ASB15Q8WXK1 588 aa6.21□□□□□ -1.42
CD44-215ENST00000525241 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.21□□□□□ -1.42
CD44-215ENST00000525241 DLL4Q9NR61 685 aa6.21□□□□□ -1.42
CD44-215ENST00000525241 THG1LQ9NWX6 298 aaKnown RBP6.21□□□□□ -1.42
CD44-215ENST00000525241 SHROOM4Q9ULL8 1493 aa6.21□□□□□ -1.42
CD44-215ENST00000525241 DNAJC6O75061 913 aa6.2□□□□□ -1.42
CD44-215ENST00000525241 SLC9A1P19634 815 aa6.2□□□□□ -1.42
CD44-215ENST00000525241 SOX5P35711 763 aa6.2□□□□□ -1.42
CD44-215ENST00000525241 DHCR24Q15392 516 aa6.2□□□□□ -1.42
CD44-215ENST00000525241 PHF19Q5T6S3 580 aa6.2□□□□□ -1.42
CD44-215ENST00000525241 TMEM151BQ8IW70 566 aa6.2□□□□□ -1.42
CD44-215ENST00000525241 LRRC56Q8IYG6 542 aaPredicted RBP6.2□□□□□ -1.42
CD44-215ENST00000525241 TP53I13Q8NBR0 393 aaPredicted RBP6.2□□□□□ -1.42
CD44-215ENST00000525241 ZSWIM3Q96MP5 696 aa6.2□□□□□ -1.42
CD44-215ENST00000525241 TOX2Q96NM4 488 aa6.2□□□□□ -1.42
CD44-215ENST00000525241 CLIC6Q96NY7 704 aa6.2□□□□□ -1.42
CD44-215ENST00000525241 GBP4Q96PP9 640 aa6.2□□□□□ -1.42
CD44-215ENST00000525241 ELF4Q99607 663 aaPredicted RBP6.2□□□□□ -1.42
CD44-215ENST00000525241 SPC25Q9HBM1 224 aa6.2□□□□□ -1.42
CD44-215ENST00000525241 GOLGA2P5Q9HBQ8 144 aa6.2□□□□□ -1.42
CD44-215ENST00000525241 ACSS2Q9NR19 701 aa6.2□□□□□ -1.42
CD44-215ENST00000525241 SPO11Q9Y5K1 396 aa6.2□□□□□ -1.42
CD44-215ENST00000525241 SH3D21A4FU49 640 aa6.19□□□□□ -1.42
CD44-215ENST00000525241 MPIG6BO95866 241 aa6.19□□□□□ -1.42
CD44-215ENST00000525241 IL18BPO95998 194 aa6.19□□□□□ -1.42
CD44-215ENST00000525241 BPIP17213 487 aa6.19□□□□□ -1.42
CD44-215ENST00000525241 POU3F3P20264 500 aaPredicted RBP6.19□□□□□ -1.42
CD44-215ENST00000525241 PTGS1P23219 599 aa6.19□□□□□ -1.42
CD44-215ENST00000525241 MC4RP32245 332 aa6.19□□□□□ -1.42
CD44-215ENST00000525241 ADCYAP1R1P41586 468 aa6.19□□□□□ -1.42
CD44-215ENST00000525241 FNTBP49356 437 aa6.19□□□□□ -1.42
CD44-215ENST00000525241 ZNF174Q15697 407 aa6.19□□□□□ -1.42
CD44-215ENST00000525241 VMACQ2NL98 169 aa6.19□□□□□ -1.42
CD44-215ENST00000525241 RNF187Q5TA31 235 aaPredicted RBP6.19□□□□□ -1.42
CD44-215ENST00000525241 FILIP1Q7Z7B0 1213 aa6.19□□□□□ -1.42
CD44-215ENST00000525241 ADGRG2Q8IZP9 1017 aa6.19□□□□□ -1.42
CD44-215ENST00000525241 AFAP1L2Q8N4X5 818 aa6.19□□□□□ -1.42
CD44-215ENST00000525241 LINC01356Q8N9X3 169 aa6.19□□□□□ -1.42
CD44-215ENST00000525241 FOXRED1Q96CU9 486 aaPredicted RBP6.19□□□□□ -1.42
CD44-215ENST00000525241 GPR101Q96P66 508 aaPredicted RBP6.19□□□□□ -1.42
CD44-215ENST00000525241 PCIF1Q9H4Z3 704 aa6.19□□□□□ -1.42
CD44-215ENST00000525241 ARHGAP28Q9P2N2 729 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms