RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 XIRP1Q702N8 1843 aaKnown RBP11.13□□□□□ -0.63
MCF2-209ENST00000520602 LRRC10BA6NIK2 292 aa11.13□□□□□ -0.63
MCF2-209ENST00000520602 KCNK3O14649 394 aa11.13□□□□□ -0.63
MCF2-209ENST00000520602 ONECUT3O60422 494 aaPredicted RBP11.13□□□□□ -0.63
MCF2-209ENST00000520602 PPARDQ03181 441 aa11.13□□□□□ -0.63
MCF2-209ENST00000520602 CFAP221Q4G0U5 840 aa11.13□□□□□ -0.63
MCF2-209ENST00000520602 SND1Q7KZF4 910 aaKnown RBP eCLIP11.13□□□□□ -0.63
MCF2-209ENST00000520602 PRPF38AQ8NAV1 312 aaKnown RBP11.13□□□□□ -0.63
MCF2-209ENST00000520602 CEP63Q96MT8 703 aa11.13□□□□□ -0.63
MCF2-209ENST00000520602 FEM1BQ9UK73 627 aa11.13□□□□□ -0.63
MCF2-209ENST00000520602 ACTN1P12814 892 aa11.13□□□□□ -0.63
MCF2-209ENST00000520602 ARHGAP27Q6ZUM4 889 aa11.13□□□□□ -0.63
MCF2-209ENST00000520602 PEX26Q7Z412 305 aa11.13□□□□□ -0.63
MCF2-209ENST00000520602 RMDN3Q96TC7 470 aa11.13□□□□□ -0.63
MCF2-209ENST00000520602 PDE11AQ9HCR9 933 aa11.13□□□□□ -0.63
MCF2-209ENST00000520602 GLI3P10071 1580 aa11.12□□□□□ -0.63
MCF2-209ENST00000520602 DUOX1Q9NRD9 1551 aa11.12□□□□□ -0.63
MCF2-209ENST00000520602 EIF3CLB5ME19 914 aaKnown RBP11.12□□□□□ -0.63
MCF2-209ENST00000520602 FAM86B1E9PN63 330 aa11.12□□□□□ -0.63
MCF2-209ENST00000520602 SERPING1P05155 500 aa11.12□□□□□ -0.63
MCF2-209ENST00000520602 FAM86B2P0C5J1 330 aa11.12□□□□□ -0.63
MCF2-209ENST00000520602 KRT5P13647 590 aa11.12□□□□□ -0.63
MCF2-209ENST00000520602 RPA1P27694 616 aa11.12□□□□□ -0.63
MCF2-209ENST00000520602 BIRC3Q13489 604 aa11.12□□□□□ -0.63
MCF2-209ENST00000520602 ZC2HC1CQ53FD0 456 aaPredicted RBP11.12□□□□□ -0.63
MCF2-209ENST00000520602 SAMD7Q7Z3H4 446 aa11.12□□□□□ -0.63
MCF2-209ENST00000520602 IRF2BP1Q8IU81 584 aa11.12□□□□□ -0.63
MCF2-209ENST00000520602 EIF3CQ99613 913 aaKnown RBP11.12□□□□□ -0.63
MCF2-209ENST00000520602 LXNQ9BS40 222 aa11.12□□□□□ -0.63
MCF2-209ENST00000520602 ABCB6Q9NP58 842 aa11.12□□□□□ -0.63
MCF2-209ENST00000520602 ST7Q9NRC1 585 aa11.12□□□□□ -0.63
MCF2-209ENST00000520602 MYO5AQ9Y4I1 1855 aaKnown RBP11.12□□□□□ -0.63
MCF2-209ENST00000520602 SHTN1A0MZ66 631 aa11.12□□□□□ -0.63
MCF2-209ENST00000520602 CCDC151A5D8V7 595 aa11.12□□□□□ -0.63
MCF2-209ENST00000520602 NCK2O43639 380 aa11.12□□□□□ -0.63
MCF2-209ENST00000520602 CAPN2P17655 700 aa11.12□□□□□ -0.63
MCF2-209ENST00000520602 TCP1P17987 556 aaKnown RBP11.12□□□□□ -0.63
MCF2-209ENST00000520602 ZCCHC17Q9NP64 241 aaKnown RBP11.12□□□□□ -0.63
MCF2-209ENST00000520602 CWC15Q9P013 229 aaKnown RBP11.12□□□□□ -0.63
MCF2-209ENST00000520602 JRKLQ9Y4A0 524 aa11.12□□□□□ -0.63
MCF2-209ENST00000520602 ZHX2Q9Y6X8 837 aa11.12□□□□□ -0.63
MCF2-209ENST00000520602 GOLGA8IPA6NC78 632 aa11.12□□□□□ -0.63
MCF2-209ENST00000520602 GOLGA8JA6NMD2 632 aa11.12□□□□□ -0.63
MCF2-209ENST00000520602 ZNF185O15231 689 aa11.12□□□□□ -0.63
MCF2-209ENST00000520602 H2AFZP0C0S5 128 aa11.12□□□□□ -0.63
MCF2-209ENST00000520602 MTMR1Q13613 665 aa11.12□□□□□ -0.63
MCF2-209ENST00000520602 CC2D1AQ6P1N0 951 aaPredicted RBP11.12□□□□□ -0.63
MCF2-209ENST00000520602 PADI6Q6TGC4 694 aa11.12□□□□□ -0.63
MCF2-209ENST00000520602 PPP4R3CPQ6ZMV5 832 aa11.12□□□□□ -0.63
MCF2-209ENST00000520602 H2AFVQ71UI9 128 aa11.12□□□□□ -0.63
MCF2-209ENST00000520602 USP37Q86T82 979 aa11.12□□□□□ -0.63
MCF2-209ENST00000520602 SCLT1Q96NL6 688 aa11.12□□□□□ -0.63
MCF2-209ENST00000520602 LACRTQ9GZZ8 138 aa11.12□□□□□ -0.63
MCF2-209ENST00000520602 CEP72Q9P209 647 aa11.12□□□□□ -0.63
MCF2-209ENST00000520602 LAMA4Q16363 1823 aa11.12□□□□□ -0.63
MCF2-209ENST00000520602 A0A1W2PRG0 241 aa11.11□□□□□ -0.63
MCF2-209ENST00000520602 HSF2BPO75031 334 aa11.11□□□□□ -0.63
MCF2-209ENST00000520602 EYA4O95677 639 aa11.11□□□□□ -0.63
MCF2-209ENST00000520602 DLATP10515 647 aaKnown RBP11.11□□□□□ -0.63
MCF2-209ENST00000520602 SLC7A5Q01650 507 aa11.11□□□□□ -0.63
MCF2-209ENST00000520602 RNF207Q6ZRF8 634 aa11.11□□□□□ -0.63
MCF2-209ENST00000520602 DAAM2Q86T65 1068 aa11.11□□□□□ -0.63
MCF2-209ENST00000520602 TMEM139Q8IV31 216 aa11.11□□□□□ -0.63
MCF2-209ENST00000520602 PPM1KQ8N3J5 372 aa11.11□□□□□ -0.63
MCF2-209ENST00000520602 GMCL1Q96IK5 515 aa11.11□□□□□ -0.63
MCF2-209ENST00000520602 WRNIP1Q96S55 665 aa11.11□□□□□ -0.63
MCF2-209ENST00000520602 PAGR1Q9BTK6 254 aa11.11□□□□□ -0.63
MCF2-209ENST00000520602 TRIM31Q9BZY9 425 aa11.11□□□□□ -0.63
MCF2-209ENST00000520602 MYH7P12883 1935 aa11.11□□□□□ -0.63
MCF2-209ENST00000520602 ABL1P00519 1130 aa11.11□□□□□ -0.63
MCF2-209ENST00000520602 TRIM49P0CI25 452 aa11.11□□□□□ -0.63
MCF2-209ENST00000520602 TRIM49CP0CI26 452 aa11.11□□□□□ -0.63
MCF2-209ENST00000520602 PEX3P56589 373 aa11.11□□□□□ -0.63
MCF2-209ENST00000520602 TNNC1P63316 161 aa11.11□□□□□ -0.63
MCF2-209ENST00000520602 GABPB1Q06547 395 aaPredicted RBP11.11□□□□□ -0.63
MCF2-209ENST00000520602 CXCL9Q07325 125 aa11.11□□□□□ -0.63
MCF2-209ENST00000520602 ADAT2Q7Z6V5 191 aaKnown RBP11.11□□□□□ -0.63
MCF2-209ENST00000520602 ANKRD35Q8N283 1001 aa11.11□□□□□ -0.63
MCF2-209ENST00000520602 IFT74Q96LB3 600 aa11.11□□□□□ -0.63
MCF2-209ENST00000520602 ERGIC2Q96RQ1 377 aa11.11□□□□□ -0.63
MCF2-209ENST00000520602 DNAJC18Q9H819 358 aa11.11□□□□□ -0.63
MCF2-209ENST00000520602 AS3MTQ9HBK9 375 aa11.11□□□□□ -0.63
MCF2-209ENST00000520602 CTTNBP2NLQ9P2B4 639 aa11.11□□□□□ -0.63
MCF2-209ENST00000520602 SLC9A1P19634 815 aa11.11□□□□□ -0.63
MCF2-209ENST00000520602 MTMR2Q13614 643 aa11.11□□□□□ -0.63
MCF2-209ENST00000520602 ECM1Q16610 540 aa11.11□□□□□ -0.63
MCF2-209ENST00000520602 RPGRIP1Q96KN7 1286 aa11.11□□□□□ -0.63
MCF2-209ENST00000520602 FNBP1Q96RU3 617 aa11.11□□□□□ -0.63
MCF2-209ENST00000520602 RUSC1Q9BVN2 902 aa11.11□□□□□ -0.63
MCF2-209ENST00000520602 TYW1Q9NV66 732 aaKnown RBP11.11□□□□□ -0.63
MCF2-209ENST00000520602 MEIS2O14770 477 aa11.1□□□□□ -0.63
MCF2-209ENST00000520602 TBX3O15119 743 aa11.1□□□□□ -0.63
MCF2-209ENST00000520602 SNHG28P0DPA3 235 aa11.1□□□□□ -0.63
MCF2-209ENST00000520602 BCRP11274 1271 aa11.1□□□□□ -0.63
MCF2-209ENST00000520602 GYS2P54840 703 aa11.1□□□□□ -0.63
MCF2-209ENST00000520602 APBA1Q02410 837 aa11.1□□□□□ -0.63
MCF2-209ENST00000520602 NFRKBQ6P4R8 1299 aa11.1□□□□□ -0.63
MCF2-209ENST00000520602 PDXDC1Q6P996 788 aa11.1□□□□□ -0.63
MCF2-209ENST00000520602 SH3BP5LQ7L8J4 393 aa11.1□□□□□ -0.63
MCF2-209ENST00000520602 M0R2N6 131 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms