RNA–Protein interactions for RNA: ENST00000516665.1

RNU6-539P-201, Transcript of RNA, U6 small nuclear 539, pseudogene, humanhuman

BASIC

Gene RNU6-539P, Length 103 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-539P-201ENST00000516665 GBP1P32455 592 aa0.59□□□□□ -2.31
RNU6-539P-201ENST00000516665 LEXMQ3ZCV2 418 aa0.59□□□□□ -2.31
RNU6-539P-201ENST00000516665 ZMAT1Q5H9K5 638 aa0.59□□□□□ -2.31
RNU6-539P-201ENST00000516665 C9orf50Q5SZB4 431 aa0.59□□□□□ -2.31
RNU6-539P-201ENST00000516665 OTUD3Q5T2D3 398 aaPredicted RBP0.59□□□□□ -2.31
RNU6-539P-201ENST00000516665 TAB3Q8N5C8 712 aaPredicted RBP0.59□□□□□ -2.31
RNU6-539P-201ENST00000516665 MIEF2Q96C03 454 aa0.59□□□□□ -2.31
RNU6-539P-201ENST00000516665 TOE1Q96GM8 510 aaKnown RBP0.59□□□□□ -2.31
RNU6-539P-201ENST00000516665 ZNF512BQ96KM6 892 aaPredicted RBP0.59□□□□□ -2.31
RNU6-539P-201ENST00000516665 SRRTQ9BXP5 876 aaKnown RBP0.59□□□□□ -2.31
RNU6-539P-201ENST00000516665 BCO2Q9BYV7 579 aa0.59□□□□□ -2.31
RNU6-539P-201ENST00000516665 CEP44Q9C0F1 390 aa0.59□□□□□ -2.31
RNU6-539P-201ENST00000516665 ZMIZ1Q9ULJ6 1067 aa0.59□□□□□ -2.31
RNU6-539P-201ENST00000516665 FAM221BA6H8Z2 402 aa0.58□□□□□ -2.32
RNU6-539P-201ENST00000516665 PPEF2O14830 753 aa0.58□□□□□ -2.32
RNU6-539P-201ENST00000516665 WNT9AO14904 365 aa0.58□□□□□ -2.32
RNU6-539P-201ENST00000516665 DNAJA2O60884 412 aa0.58□□□□□ -2.32
RNU6-539P-201ENST00000516665 CBFA2T3O75081 653 aa0.58□□□□□ -2.32
RNU6-539P-201ENST00000516665 LRG1P02750 347 aa0.58□□□□□ -2.32
RNU6-539P-201ENST00000516665 GSNP06396 782 aa0.58□□□□□ -2.32
RNU6-539P-201ENST00000516665 SNRPB2P08579 225 aaKnown RBP0.58□□□□□ -2.32
RNU6-539P-201ENST00000516665 HKR1P10072 659 aa0.58□□□□□ -2.32
RNU6-539P-201ENST00000516665 IFNGR1P15260 489 aa0.58□□□□□ -2.32
RNU6-539P-201ENST00000516665 NPR3P17342 541 aa0.58□□□□□ -2.32
RNU6-539P-201ENST00000516665 LAG3P18627 525 aa0.58□□□□□ -2.32
RNU6-539P-201ENST00000516665 NR4A2P43354 598 aa0.58□□□□□ -2.32
RNU6-539P-201ENST00000516665 SIM1P81133 766 aaPredicted RBP0.58□□□□□ -2.32
RNU6-539P-201ENST00000516665 TMEM201Q5SNT2 666 aa0.58□□□□□ -2.32
RNU6-539P-201ENST00000516665 MPHOSPH9Q99550 1183 aa0.58□□□□□ -2.32
RNU6-539P-201ENST00000516665 MSL2Q9HCI7 577 aa0.58□□□□□ -2.32
RNU6-539P-201ENST00000516665 PPP4R2Q9NY27 417 aa0.58□□□□□ -2.32
RNU6-539P-201ENST00000516665 DTLQ9NZJ0 730 aa0.58□□□□□ -2.32
RNU6-539P-201ENST00000516665 EME2A4GXA9 379 aaPredicted RBP0.57□□□□□ -2.32
RNU6-539P-201ENST00000516665 ANTXRLA6NF34 631 aa0.57□□□□□ -2.32
RNU6-539P-201ENST00000516665 H0Y8X5 98 aa0.57□□□□□ -2.32
RNU6-539P-201ENST00000516665 EIF1AYO14602 144 aaKnown RBP0.57□□□□□ -2.32
RNU6-539P-201ENST00000516665 EYA4O95677 639 aa0.57□□□□□ -2.32
RNU6-539P-201ENST00000516665 CHGBP05060 677 aa0.57□□□□□ -2.32
RNU6-539P-201ENST00000516665 ALPLP05186 524 aa0.57□□□□□ -2.32
RNU6-539P-201ENST00000516665 RABGGTBP53611 331 aa0.57□□□□□ -2.32
RNU6-539P-201ENST00000516665 NXPE4Q6UWF7 544 aa0.57□□□□□ -2.32
RNU6-539P-201ENST00000516665 PP632Q6XCG6 107 aa0.57□□□□□ -2.32
RNU6-539P-201ENST00000516665 PROSER1Q86XN7 944 aa0.57□□□□□ -2.32
RNU6-539P-201ENST00000516665 STPG3Q8N7X2 389 aa0.57□□□□□ -2.32
RNU6-539P-201ENST00000516665 ARRDC4Q8NCT1 418 aa0.57□□□□□ -2.32
RNU6-539P-201ENST00000516665 RGS22Q8NE09 1264 aa0.57□□□□□ -2.32
RNU6-539P-201ENST00000516665 SHCBP1Q8NEM2 672 aa0.57□□□□□ -2.32
RNU6-539P-201ENST00000516665 STK32AQ8WU08 396 aa0.57□□□□□ -2.32
RNU6-539P-201ENST00000516665 SEC14L1Q92503 715 aa0.57□□□□□ -2.32
RNU6-539P-201ENST00000516665 POM121Q96HA1 1249 aa0.57□□□□□ -2.32
RNU6-539P-201ENST00000516665 GATA5Q9BWX5 397 aaPredicted RBP0.57□□□□□ -2.32
RNU6-539P-201ENST00000516665 ALOXE3Q9BYJ1 711 aa0.57□□□□□ -2.32
RNU6-539P-201ENST00000516665 PPP1R12CQ9BZL4 782 aa0.57□□□□□ -2.32
RNU6-539P-201ENST00000516665 BHMT2Q9H2M3 363 aa0.57□□□□□ -2.32
RNU6-539P-201ENST00000516665 SLCO5A1Q9H2Y9 848 aa0.57□□□□□ -2.32
RNU6-539P-201ENST00000516665 KCND1Q9NSA2 647 aa0.57□□□□□ -2.32
RNU6-539P-201ENST00000516665 ZFP69BQ9UJL9 534 aa0.57□□□□□ -2.32
RNU6-539P-201ENST00000516665 COL4A4P53420 1690 aaPredicted RBP0.56□□□□□ -2.32
RNU6-539P-201ENST00000516665 MYMKA6NI61 221 aa0.56□□□□□ -2.32
RNU6-539P-201ENST00000516665 ADAM10O14672 748 aa0.56□□□□□ -2.32
RNU6-539P-201ENST00000516665 LINC01565O15544 149 aa0.56□□□□□ -2.32
RNU6-539P-201ENST00000516665 FBXO21O94952 628 aa0.56□□□□□ -2.32
RNU6-539P-201ENST00000516665 LMOD1P29536 600 aaPredicted RBP0.56□□□□□ -2.32
RNU6-539P-201ENST00000516665 MPLP40238 635 aa0.56□□□□□ -2.32
RNU6-539P-201ENST00000516665 GLRBP48167 497 aa0.56□□□□□ -2.32
RNU6-539P-201ENST00000516665 SEMA3AQ14563 771 aa0.56□□□□□ -2.32
RNU6-539P-201ENST00000516665 MCM6Q14566 821 aa0.56□□□□□ -2.32
RNU6-539P-201ENST00000516665 C1QL3Q5VWW1 255 aa0.56□□□□□ -2.32
RNU6-539P-201ENST00000516665 PTF1AQ7RTS3 328 aa0.56□□□□□ -2.32
RNU6-539P-201ENST00000516665 CPT1CQ8TCG5 803 aa0.56□□□□□ -2.32
RNU6-539P-201ENST00000516665 PLEKHO2Q8TD55 490 aa0.56□□□□□ -2.32
RNU6-539P-201ENST00000516665 DENND1AQ8TEH3 1009 aa0.56□□□□□ -2.32
RNU6-539P-201ENST00000516665 MYEOVQ96EZ4 313 aa0.56□□□□□ -2.32
RNU6-539P-201ENST00000516665 HMCESQ96FZ2 354 aa0.56□□□□□ -2.32
RNU6-539P-201ENST00000516665 RHOVQ96L33 236 aa0.56□□□□□ -2.32
RNU6-539P-201ENST00000516665 FCRL3Q96P31 734 aaPredicted RBP0.56□□□□□ -2.32
RNU6-539P-201ENST00000516665 SPRTNQ9H040 489 aaPredicted RBP0.56□□□□□ -2.32
RNU6-539P-201ENST00000516665 GP6Q9HCN6 339 aa0.56□□□□□ -2.32
RNU6-539P-201ENST00000516665 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP0.56□□□□□ -2.32
RNU6-539P-201ENST00000516665 ARPP21Q9UBL0 812 aaPredicted RBP0.56□□□□□ -2.32
RNU6-539P-201ENST00000516665 ESRRBO95718 433 aa0.55□□□□□ -2.32
RNU6-539P-201ENST00000516665 KELP23276 732 aa0.55□□□□□ -2.32
RNU6-539P-201ENST00000516665 POLD1P28340 1107 aa0.55□□□□□ -2.32
RNU6-539P-201ENST00000516665 HTR6P50406 440 aa0.55□□□□□ -2.32
RNU6-539P-201ENST00000516665 TOP3AQ13472 1001 aaPredicted RBP0.55□□□□□ -2.32
RNU6-539P-201ENST00000516665 LAMB3Q13751 1172 aa0.55□□□□□ -2.32
RNU6-539P-201ENST00000516665 CDCA8Q53HL2 280 aa0.55□□□□□ -2.32
RNU6-539P-201ENST00000516665 UBAP2Q5T6F2 1119 aaKnown RBP0.55□□□□□ -2.32
RNU6-539P-201ENST00000516665 CWF19L1Q69YN2 538 aaKnown RBP0.55□□□□□ -2.32
RNU6-539P-201ENST00000516665 CUZD1Q86UP6 607 aa0.55□□□□□ -2.32
RNU6-539P-201ENST00000516665 WWC1Q8IX03 1113 aa0.55□□□□□ -2.32
RNU6-539P-201ENST00000516665 CASKIN2Q8WXE0 1202 aa0.55□□□□□ -2.32
RNU6-539P-201ENST00000516665 LMLNQ96KR4 655 aa0.55□□□□□ -2.32
RNU6-539P-201ENST00000516665 DSCC1Q9BVC3 393 aa0.55□□□□□ -2.32
RNU6-539P-201ENST00000516665 ASB6Q9NWX5 421 aa0.55□□□□□ -2.32
RNU6-539P-201ENST00000516665 TMEM260Q9NX78 707 aa0.55□□□□□ -2.32
RNU6-539P-201ENST00000516665 FBXL21Q9UKT6 434 aa0.55□□□□□ -2.32
RNU6-539P-201ENST00000516665 SORCS3Q9UPU3 1222 aa0.55□□□□□ -2.32
RNU6-539P-201ENST00000516665 B4E1Z4 1266 aa0.54□□□□□ -2.32
RNU6-539P-201ENST00000516665 SUPT5HO00267 1087 aaKnown RBP0.54□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms