RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 TXKP42681 527 aa10.55□□□□□ -0.72
VCAN-210ENST00000513960 FNTAP49354 379 aa10.55□□□□□ -0.72
VCAN-210ENST00000513960 GTF2IP78347 998 aa10.55□□□□□ -0.72
VCAN-210ENST00000513960 TMEM266Q2M3C6 531 aa10.55□□□□□ -0.72
VCAN-210ENST00000513960 SAMD15Q9P1V8 674 aa10.55□□□□□ -0.72
VCAN-210ENST00000513960 USP17L5A8MUK1 530 aa10.55□□□□□ -0.72
VCAN-210ENST00000513960 KRT18P05783 430 aaKnown RBP10.55□□□□□ -0.72
VCAN-210ENST00000513960 PPP1R2P41236 205 aa10.55□□□□□ -0.72
VCAN-210ENST00000513960 KLHL30Q0D2K2 578 aa10.55□□□□□ -0.72
VCAN-210ENST00000513960 QPCTQ16769 361 aa10.55□□□□□ -0.72
VCAN-210ENST00000513960 PREPLQ4J6C6 727 aaPredicted RBP10.55□□□□□ -0.72
VCAN-210ENST00000513960 SFMBT2Q5VUG0 894 aa10.55□□□□□ -0.72
VCAN-210ENST00000513960 TCERG1LQ5VWI1 586 aa10.55□□□□□ -0.72
VCAN-210ENST00000513960 TRIM68Q6AZZ1 485 aa10.55□□□□□ -0.72
VCAN-210ENST00000513960 FUKQ8N0W3 1084 aa10.55□□□□□ -0.72
VCAN-210ENST00000513960 RETREG2Q8NC44 543 aa10.55□□□□□ -0.72
VCAN-210ENST00000513960 SGSM3Q96HU1 749 aa10.55□□□□□ -0.72
VCAN-210ENST00000513960 FAM167BQ9BTA0 163 aa10.55□□□□□ -0.72
VCAN-210ENST00000513960 RAB34Q9BZG1 259 aa10.55□□□□□ -0.72
VCAN-210ENST00000513960 FBXL5Q9UKA1 691 aa10.55□□□□□ -0.72
VCAN-210ENST00000513960 FRMPD2Q68DX3 1309 aaPredicted RBP10.54□□□□□ -0.72
VCAN-210ENST00000513960 F8W031 263 aaPredicted RBP10.54□□□□□ -0.72
VCAN-210ENST00000513960 RAD21O60216 631 aa10.54□□□□□ -0.72
VCAN-210ENST00000513960 SMARCA1P28370 1054 aa10.54□□□□□ -0.72
VCAN-210ENST00000513960 SLCO1A2P46721 670 aa10.54□□□□□ -0.72
VCAN-210ENST00000513960 DHX9Q08211 1270 aaKnown RBP10.54□□□□□ -0.72
VCAN-210ENST00000513960 DAAM2Q86T65 1068 aa10.54□□□□□ -0.72
VCAN-210ENST00000513960 MCM8Q9UJA3 840 aa10.54□□□□□ -0.72
VCAN-210ENST00000513960 G3V3G9 751 aa10.54□□□□□ -0.72
VCAN-210ENST00000513960 KRIT1O00522 736 aa10.54□□□□□ -0.72
VCAN-210ENST00000513960 RIMBP2O15034 1052 aa10.54□□□□□ -0.72
VCAN-210ENST00000513960 KLRC4O43908 158 aa10.54□□□□□ -0.72
VCAN-210ENST00000513960 EIF6P56537 245 aaKnown RBP10.54□□□□□ -0.72
VCAN-210ENST00000513960 SATB1Q01826 763 aa10.54□□□□□ -0.72
VCAN-210ENST00000513960 DCAF8Q5TAQ9 597 aa10.54□□□□□ -0.72
VCAN-210ENST00000513960 SV2BQ7L1I2 683 aa10.54□□□□□ -0.72
VCAN-210ENST00000513960 CCDC25Q86WR0 208 aa10.54□□□□□ -0.72
VCAN-210ENST00000513960 TBC1D16Q8TBP0 767 aa10.54□□□□□ -0.72
VCAN-210ENST00000513960 ELAC2Q9BQ52 826 aaKnown RBP10.54□□□□□ -0.72
VCAN-210ENST00000513960 TLR10Q9BXR5 811 aa10.54□□□□□ -0.72
VCAN-210ENST00000513960 TRIM9Q9C026 710 aa10.54□□□□□ -0.72
VCAN-210ENST00000513960 L3MBTL1Q9Y468 752 aa10.54□□□□□ -0.72
VCAN-210ENST00000513960 CASZ1Q86V15 1759 aa10.54□□□□□ -0.72
VCAN-210ENST00000513960 LTBP4Q8N2S1 1624 aa10.54□□□□□ -0.72
VCAN-210ENST00000513960 MYBL1P10243 752 aa10.54□□□□□ -0.72
VCAN-210ENST00000513960 CHRM1P11229 460 aaPredicted RBP10.54□□□□□ -0.72
VCAN-210ENST00000513960 SCTRP47872 440 aa10.54□□□□□ -0.72
VCAN-210ENST00000513960 CNNM4Q6P4Q7 775 aa10.54□□□□□ -0.72
VCAN-210ENST00000513960 FAM133AQ8N9E0 248 aa10.54□□□□□ -0.72
VCAN-210ENST00000513960 CCDC197Q8NCU1 140 aa10.54□□□□□ -0.72
VCAN-210ENST00000513960 WHAMMQ8TF30 809 aa10.54□□□□□ -0.72
VCAN-210ENST00000513960 FAM163AQ96GL9 167 aaPredicted RBP10.54□□□□□ -0.72
VCAN-210ENST00000513960 SALL4Q9UJQ4 1053 aa10.54□□□□□ -0.72
VCAN-210ENST00000513960 COL24A1Q17RW2 1714 aa10.54□□□□□ -0.72
VCAN-210ENST00000513960 BTAF1O14981 1849 aa10.53□□□□□ -0.72
VCAN-210ENST00000513960 NKRFO15226 690 aaKnown RBP eCLIP10.53□□□□□ -0.72
VCAN-210ENST00000513960 KRT13P13646 458 aa10.53□□□□□ -0.72
VCAN-210ENST00000513960 FECHP22830 423 aa10.53□□□□□ -0.72
VCAN-210ENST00000513960 HSD17B3P37058 310 aa10.53□□□□□ -0.72
VCAN-210ENST00000513960 MMP14P50281 582 aa10.53□□□□□ -0.72
VCAN-210ENST00000513960 ADCY7P51828 1080 aa10.53□□□□□ -0.72
VCAN-210ENST00000513960 RHBDL3P58872 404 aa10.53□□□□□ -0.72
VCAN-210ENST00000513960 PPP2R2AP63151 447 aa10.53□□□□□ -0.72
VCAN-210ENST00000513960 CALCRLQ16602 461 aa10.53□□□□□ -0.72
VCAN-210ENST00000513960 VWA3BQ502W6 1294 aa10.53□□□□□ -0.72
VCAN-210ENST00000513960 LRRC47Q8N1G4 583 aaKnown RBP10.53□□□□□ -0.72
VCAN-210ENST00000513960 CERKQ8TCT0 537 aa10.53□□□□□ -0.72
VCAN-210ENST00000513960 KCNV2Q8TDN2 545 aa10.53□□□□□ -0.72
VCAN-210ENST00000513960 STAMBPL1Q96FJ0 436 aa10.53□□□□□ -0.72
VCAN-210ENST00000513960 YIPF3Q9GZM5 350 aa10.53□□□□□ -0.72
VCAN-210ENST00000513960 GPCPD1Q9NPB8 672 aa10.53□□□□□ -0.72
VCAN-210ENST00000513960 hCG_1984214I3L0E3 225 aa10.53□□□□□ -0.72
VCAN-210ENST00000513960 DAPK3O43293 454 aa10.53□□□□□ -0.72
VCAN-210ENST00000513960 GYS1P13807 737 aa10.53□□□□□ -0.72
VCAN-210ENST00000513960 CRY2Q49AN0 593 aa10.53□□□□□ -0.72
VCAN-210ENST00000513960 ACCSLQ4AC99 568 aa10.53□□□□□ -0.72
VCAN-210ENST00000513960 ASPRV1Q53RT3 343 aa10.53□□□□□ -0.72
VCAN-210ENST00000513960 TTI2Q6NXR4 508 aa10.53□□□□□ -0.72
VCAN-210ENST00000513960 ZNF713Q8N859 430 aaPredicted RBP10.53□□□□□ -0.72
VCAN-210ENST00000513960 ZNF507Q8TCN5 953 aa10.53□□□□□ -0.72
VCAN-210ENST00000513960 CAVIN3Q969G5 261 aa10.53□□□□□ -0.72
VCAN-210ENST00000513960 POLLQ9UGP5 575 aa10.53□□□□□ -0.72
VCAN-210ENST00000513960 DNM1LO00429 736 aa10.53□□□□□ -0.72
VCAN-210ENST00000513960 FGFR1OPO95684 399 aaKnown RBP10.53□□□□□ -0.72
VCAN-210ENST00000513960 NSMCE1Q8WV22 266 aa10.53□□□□□ -0.72
VCAN-210ENST00000513960 RAPGEF5Q92565 580 aa10.53□□□□□ -0.72
VCAN-210ENST00000513960 COA7Q96BR5 231 aa10.53□□□□□ -0.72
VCAN-210ENST00000513960 TMEM260Q9NX78 707 aa10.53□□□□□ -0.72
VCAN-210ENST00000513960 TSKSQ9UJT2 592 aa10.53□□□□□ -0.72
VCAN-210ENST00000513960 KLRC1P26715 233 aa10.52□□□□□ -0.72
VCAN-210ENST00000513960 ORC2Q13416 577 aaPredicted RBP10.52□□□□□ -0.72
VCAN-210ENST00000513960 MEA1Q16626 185 aa10.52□□□□□ -0.72
VCAN-210ENST00000513960 SPRED3Q2MJR0 410 aa10.52□□□□□ -0.72
VCAN-210ENST00000513960 ANKRD20A8PQ5CZ79 823 aa10.52□□□□□ -0.72
VCAN-210ENST00000513960 KLHDC7AQ5VTJ3 777 aa10.52□□□□□ -0.72
VCAN-210ENST00000513960 DPP8Q6V1X1 898 aaPredicted RBP10.52□□□□□ -0.72
VCAN-210ENST00000513960 CCDC84Q86UT8 332 aaPredicted RBP10.52□□□□□ -0.72
VCAN-210ENST00000513960 GJD4Q96KN9 370 aaPredicted RBP10.52□□□□□ -0.72
VCAN-210ENST00000513960 C7orf25Q9BPX7 421 aa10.52□□□□□ -0.72
VCAN-210ENST00000513960 ZC3H12CQ9C0D7 883 aaKnown RBP10.52□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms