RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 IRF2BP2Q7Z5L9 587 aa10.14□□□□□ -0.79
LIMCH1-215ENST00000512632 TRIM31Q9BZY9 425 aa10.14□□□□□ -0.79
LIMCH1-215ENST00000512632 NT5C3AQ9H0P0 336 aa10.14□□□□□ -0.79
LIMCH1-215ENST00000512632 PCDHB13Q9Y5F0 798 aa10.14□□□□□ -0.79
LIMCH1-215ENST00000512632 SART1O43290 800 aaKnown RBP10.14□□□□□ -0.79
LIMCH1-215ENST00000512632 TTLL1O95922 423 aa10.14□□□□□ -0.79
LIMCH1-215ENST00000512632 UCHL3P15374 230 aa10.14□□□□□ -0.79
LIMCH1-215ENST00000512632 TNFRSF8P28908 595 aa10.14□□□□□ -0.79
LIMCH1-215ENST00000512632 SHROOM1Q2M3G4 852 aaPredicted RBP10.14□□□□□ -0.79
LIMCH1-215ENST00000512632 POLLQ9UGP5 575 aa10.14□□□□□ -0.79
LIMCH1-215ENST00000512632 PCDHA1Q9Y5I3 950 aa10.14□□□□□ -0.79
LIMCH1-215ENST00000512632 PPP1R37O75864 691 aa10.13□□□□□ -0.79
LIMCH1-215ENST00000512632 GNA14O95837 355 aa10.13□□□□□ -0.79
LIMCH1-215ENST00000512632 TAL1P17542 331 aaPredicted RBP10.13□□□□□ -0.79
LIMCH1-215ENST00000512632 CASP4P49662 377 aa10.13□□□□□ -0.79
LIMCH1-215ENST00000512632 EXOC3L4Q17RC7 722 aa10.13□□□□□ -0.79
LIMCH1-215ENST00000512632 PRR16Q569H4 304 aa10.13□□□□□ -0.79
LIMCH1-215ENST00000512632 ADAT2Q7Z6V5 191 aaKnown RBP10.13□□□□□ -0.79
LIMCH1-215ENST00000512632 ATP6V1G3Q96LB4 118 aa10.13□□□□□ -0.79
LIMCH1-215ENST00000512632 TAF1DQ9H5J8 278 aaPredicted RBP10.13□□□□□ -0.79
LIMCH1-215ENST00000512632 AMACRQ9UHK6 382 aa10.13□□□□□ -0.79
LIMCH1-215ENST00000512632 NAGPAQ9UK23 515 aa10.13□□□□□ -0.79
LIMCH1-215ENST00000512632 RSPH10B2B2RC85 870 aa10.13□□□□□ -0.79
LIMCH1-215ENST00000512632 RSPH10BP0C881 870 aa10.13□□□□□ -0.79
LIMCH1-215ENST00000512632 KCNA1Q09470 495 aa10.13□□□□□ -0.79
LIMCH1-215ENST00000512632 TRAPPC3LQ5T215 181 aa10.13□□□□□ -0.79
LIMCH1-215ENST00000512632 FAM196AQ6ZSG2 479 aa10.13□□□□□ -0.79
LIMCH1-215ENST00000512632 SFR1Q86XK3 245 aa10.13□□□□□ -0.79
LIMCH1-215ENST00000512632 METTL13Q8N6R0 699 aa10.13□□□□□ -0.79
LIMCH1-215ENST00000512632 NEUROG2Q9H2A3 272 aa10.13□□□□□ -0.79
LIMCH1-215ENST00000512632 DHX36Q9H2U1 1008 aaKnown RBP10.13□□□□□ -0.79
LIMCH1-215ENST00000512632 SERPINB13Q9UIV8 391 aa10.13□□□□□ -0.79
LIMCH1-215ENST00000512632 COL22A1Q8NFW1 1626 aaPredicted RBP10.13□□□□□ -0.79
LIMCH1-215ENST00000512632 GOLGA6L10A6NI86 522 aa10.13□□□□□ -0.79
LIMCH1-215ENST00000512632 E7EVH7 732 aa10.13□□□□□ -0.79
LIMCH1-215ENST00000512632 hCG_1984214I3L0E3 225 aa10.13□□□□□ -0.79
LIMCH1-215ENST00000512632 MYO1FO00160 1098 aa10.13□□□□□ -0.79
LIMCH1-215ENST00000512632 ZBTB5O15062 677 aa10.13□□□□□ -0.79
LIMCH1-215ENST00000512632 MYBP10242 640 aa10.13□□□□□ -0.79
LIMCH1-215ENST00000512632 FLT3P36888 993 aa10.13□□□□□ -0.79
LIMCH1-215ENST00000512632 ODF2Q5BJF6 829 aa10.13□□□□□ -0.79
LIMCH1-215ENST00000512632 ZNF713Q8N859 430 aaPredicted RBP10.13□□□□□ -0.79
LIMCH1-215ENST00000512632 UBLCP1Q8WVY7 318 aaPredicted RBP10.13□□□□□ -0.79
LIMCH1-215ENST00000512632 DPH5Q9H2P9 285 aa10.13□□□□□ -0.79
LIMCH1-215ENST00000512632 AJAP1Q9UKB5 411 aaPredicted RBP10.13□□□□□ -0.79
LIMCH1-215ENST00000512632 KRIT1O00522 736 aa10.13□□□□□ -0.79
LIMCH1-215ENST00000512632 DAPK3O43293 454 aa10.13□□□□□ -0.79
LIMCH1-215ENST00000512632 AKAP3O75969 853 aa10.13□□□□□ -0.79
LIMCH1-215ENST00000512632 HSD17B3P37058 310 aa10.13□□□□□ -0.79
LIMCH1-215ENST00000512632 SEPT2Q15019 361 aa10.13□□□□□ -0.79
LIMCH1-215ENST00000512632 QRICH1Q2TAL8 776 aa10.13□□□□□ -0.79
LIMCH1-215ENST00000512632 KDM7AQ6ZMT4 941 aa10.13□□□□□ -0.79
LIMCH1-215ENST00000512632 B4GALNT4Q76KP1 1039 aa10.13□□□□□ -0.79
LIMCH1-215ENST00000512632 PEX26Q7Z412 305 aa10.13□□□□□ -0.79
LIMCH1-215ENST00000512632 RBM46Q8TBY0 533 aaKnown RBP10.13□□□□□ -0.79
LIMCH1-215ENST00000512632 WHAMMQ8TF30 809 aa10.13□□□□□ -0.79
LIMCH1-215ENST00000512632 CCT8L2Q96SF2 557 aa10.13□□□□□ -0.79
LIMCH1-215ENST00000512632 COL14A1Q05707 1796 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-215ENST00000512632 SNHG28P0DPA3 235 aa10.12□□□□□ -0.79
LIMCH1-215ENST00000512632 TMOD1P28289 359 aa10.12□□□□□ -0.79
LIMCH1-215ENST00000512632 MDH1P40925 334 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-215ENST00000512632 CLK2P49760 499 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-215ENST00000512632 MNAT1P51948 309 aa10.12□□□□□ -0.79
LIMCH1-215ENST00000512632 HDLBPQ00341 1268 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-215ENST00000512632 SF3A3Q12874 501 aaKnown RBP eCLIP10.12□□□□□ -0.79
LIMCH1-215ENST00000512632 IFT88Q13099 833 aa10.12□□□□□ -0.79
LIMCH1-215ENST00000512632 PRPF4BQ13523 1007 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-215ENST00000512632 RC3H1Q5TC82 1133 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-215ENST00000512632 PRR5LQ6MZQ0 368 aa10.12□□□□□ -0.79
LIMCH1-215ENST00000512632 MMS22LQ6ZRQ5 1243 aa10.12□□□□□ -0.79
LIMCH1-215ENST00000512632 CATSPER3Q86XQ3 398 aa10.12□□□□□ -0.79
LIMCH1-215ENST00000512632 U2AF1L4Q8WU68 220 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-215ENST00000512632 CELF4Q9BZC1 486 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-215ENST00000512632 USP40Q9NVE5 1235 aa10.12□□□□□ -0.79
LIMCH1-215ENST00000512632 XRCC5P13010 732 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-215ENST00000512632 ATP2B4P23634 1241 aa10.12□□□□□ -0.79
LIMCH1-215ENST00000512632 PON1P27169 355 aa10.12□□□□□ -0.79
LIMCH1-215ENST00000512632 HNRNPH1P31943 449 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-215ENST00000512632 CTNNA1P35221 906 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-215ENST00000512632 NOVP48745 357 aa10.12□□□□□ -0.79
LIMCH1-215ENST00000512632 USP11P51784 963 aa10.12□□□□□ -0.79
LIMCH1-215ENST00000512632 GABPAQ06546 454 aa10.12□□□□□ -0.79
LIMCH1-215ENST00000512632 SLF2Q8IX21 1173 aa10.12□□□□□ -0.79
LIMCH1-215ENST00000512632 ZNF473Q8WTR7 871 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-215ENST00000512632 EPN3Q9H201 632 aa10.12□□□□□ -0.79
LIMCH1-215ENST00000512632 KDM3AQ9Y4C1 1321 aa10.12□□□□□ -0.79
LIMCH1-215ENST00000512632 CPP00450 1065 aa10.12□□□□□ -0.79
LIMCH1-215ENST00000512632 AFPP02771 609 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-215ENST00000512632 CACNB3P54284 484 aa10.12□□□□□ -0.79
LIMCH1-215ENST00000512632 PTGISQ16647 500 aa10.12□□□□□ -0.79
LIMCH1-215ENST00000512632 BARGINQ6ZT62 677 aa10.12□□□□□ -0.79
LIMCH1-215ENST00000512632 REEP2Q9BRK0 252 aa10.12□□□□□ -0.79
LIMCH1-215ENST00000512632 ANO3Q9BYT9 981 aa10.12□□□□□ -0.79
LIMCH1-215ENST00000512632 GFPT2O94808 682 aa10.11□□□□□ -0.79
LIMCH1-215ENST00000512632 UAP1Q16222 522 aaPredicted RBP10.11□□□□□ -0.79
LIMCH1-215ENST00000512632 TBC1D16Q8TBP0 767 aa10.11□□□□□ -0.79
LIMCH1-215ENST00000512632 FAM163AQ96GL9 167 aaPredicted RBP10.11□□□□□ -0.79
LIMCH1-215ENST00000512632 P2RX7Q99572 595 aaKnown RBP10.11□□□□□ -0.79
LIMCH1-215ENST00000512632 ISCUQ9H1K1 167 aa10.11□□□□□ -0.79
LIMCH1-215ENST00000512632 NOC2LQ9Y3T9 749 aaKnown RBP10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms