RNA–Protein interactions for RNA: ENST00000509490.5

PDGFRA-208, Transcript of platelet derived growth factor receptor alpha, humanhuman

TSL 1 (best)

Gene PDGFRA, Length 2,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-208ENST00000509490 PLCB4Q15147 1175 aa10.13□□□□□ -0.79
PDGFRA-208ENST00000509490 SYT2Q8N9I0 419 aaPredicted RBP10.13□□□□□ -0.79
PDGFRA-208ENST00000509490 OLIG1Q8TAK6 271 aa10.13□□□□□ -0.79
PDGFRA-208ENST00000509490 ETNPPLQ8TBG4 499 aa10.13□□□□□ -0.79
PDGFRA-208ENST00000509490 TBC1D5Q92609 795 aa10.13□□□□□ -0.79
PDGFRA-208ENST00000509490 COA7Q96BR5 231 aa10.13□□□□□ -0.79
PDGFRA-208ENST00000509490 BORCS6Q96GS4 357 aa10.13□□□□□ -0.79
PDGFRA-208ENST00000509490 EPN3Q9H201 632 aa10.13□□□□□ -0.79
PDGFRA-208ENST00000509490 DHX36Q9H2U1 1008 aaKnown RBP10.13□□□□□ -0.79
PDGFRA-208ENST00000509490 TMBIM4Q9HC24 238 aa10.13□□□□□ -0.79
PDGFRA-208ENST00000509490 EMILIN3Q9NT22 766 aa10.13□□□□□ -0.79
PDGFRA-208ENST00000509490 FAM169AQ9Y6X4 670 aa10.13□□□□□ -0.79
PDGFRA-208ENST00000509490 COL2A1P02458 1487 aaPredicted RBP10.12□□□□□ -0.79
PDGFRA-208ENST00000509490 MUTP22033 750 aa10.12□□□□□ -0.79
PDGFRA-208ENST00000509490 SHMT1P34896 483 aa10.12□□□□□ -0.79
PDGFRA-208ENST00000509490 POLR2FP61218 127 aaKnown RBP10.12□□□□□ -0.79
PDGFRA-208ENST00000509490 KLHL30Q0D2K2 578 aa10.12□□□□□ -0.79
PDGFRA-208ENST00000509490 BIRC3Q13489 604 aa10.12□□□□□ -0.79
PDGFRA-208ENST00000509490 EPHA7Q15375 998 aa10.12□□□□□ -0.79
PDGFRA-208ENST00000509490 CLUL1Q15846 466 aa10.12□□□□□ -0.79
PDGFRA-208ENST00000509490 AGBL2Q5U5Z8 902 aa10.12□□□□□ -0.79
PDGFRA-208ENST00000509490 RUFY1Q96T51 708 aa10.12□□□□□ -0.79
PDGFRA-208ENST00000509490 YY1AP1Q9H869 796 aa10.12□□□□□ -0.79
PDGFRA-208ENST00000509490 LOXHD1Q8IVV2 1947 aa10.12□□□□□ -0.79
PDGFRA-208ENST00000509490 ZNF536O15090 1300 aa10.12□□□□□ -0.79
PDGFRA-208ENST00000509490 AKR1B1P15121 316 aa10.12□□□□□ -0.79
PDGFRA-208ENST00000509490 RPA1P27694 616 aa10.12□□□□□ -0.79
PDGFRA-208ENST00000509490 HADHBP55084 474 aaKnown RBP10.12□□□□□ -0.79
PDGFRA-208ENST00000509490 SLC7A5Q01650 507 aa10.12□□□□□ -0.79
PDGFRA-208ENST00000509490 KCNH2Q12809 1159 aa10.12□□□□□ -0.79
PDGFRA-208ENST00000509490 ITGB3BPQ13352 177 aaPredicted RBP10.12□□□□□ -0.79
PDGFRA-208ENST00000509490 PPP2R5EQ16537 467 aa10.12□□□□□ -0.79
PDGFRA-208ENST00000509490 PRR5LQ6MZQ0 368 aa10.12□□□□□ -0.79
PDGFRA-208ENST00000509490 ARFGAP2Q8N6H7 521 aa10.12□□□□□ -0.79
PDGFRA-208ENST00000509490 CNBD1Q8NA66 436 aa10.12□□□□□ -0.79
PDGFRA-208ENST00000509490 BCAS4Q8TDM0 211 aa10.12□□□□□ -0.79
PDGFRA-208ENST00000509490 LMBR1Q8WVP7 490 aa10.12□□□□□ -0.79
PDGFRA-208ENST00000509490 EEF2KMTQ96G04 330 aa10.12□□□□□ -0.79
PDGFRA-208ENST00000509490 RBM17Q96I25 401 aaKnown RBP10.12□□□□□ -0.79
PDGFRA-208ENST00000509490 SYT11Q9BT88 431 aa10.12□□□□□ -0.79
PDGFRA-208ENST00000509490 MKNK1Q9BUB5 465 aa10.12□□□□□ -0.79
PDGFRA-208ENST00000509490 EPB41L5Q9HCM4 733 aa10.12□□□□□ -0.79
PDGFRA-208ENST00000509490 SIX2Q9NPC8 291 aa10.12□□□□□ -0.79
PDGFRA-208ENST00000509490 OLFML3Q9NRN5 406 aa10.12□□□□□ -0.79
PDGFRA-208ENST00000509490 EIF3DO15371 548 aaKnown RBP eCLIP10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 AFPP02771 609 aaKnown RBP10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 GIT2Q14161 759 aa10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 LRRC41Q15345 812 aa10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 RPS6KA1Q15418 735 aa10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 KNOP1Q1ED39 458 aaKnown RBP10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 KIAA0753Q2KHM9 967 aa10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 TDRD12Q587J7 1177 aaKnown RBP10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 ICE2Q659A1 982 aa10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 HHIPL2Q6UWX4 724 aa10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 CNPY4Q8N129 248 aa10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 SLC30A5Q8TAD4 765 aa10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 TBC1D16Q8TBP0 767 aa10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 LRRC45Q96CN5 670 aa10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 FAM20AQ96MK3 541 aa10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 TRERF1Q96PN7 1200 aa10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 POLR3CQ9BUI4 534 aaPredicted RBP10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 COA1Q9GZY4 146 aa10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 PSTPIP2Q9H939 334 aa10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 NAGPAQ9UK23 515 aa10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 CALUO43852 315 aaPredicted RBP10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 CYP3A4P08684 503 aa10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 FAM153BP0C7A2 387 aa10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 UCHL3P15374 230 aa10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 HOXD13P35453 343 aa10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 FNTAP49354 379 aa10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 POU5F1Q01860 360 aaKnown RBP10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 ADAM9Q13443 819 aa10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 MTMR3Q13615 1198 aa10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 FAM153CQ494X1 144 aa10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 MFSD14BQ5SR56 506 aa10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 MMS22LQ6ZRQ5 1243 aa10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 MICALCLQ6ZW33 695 aa10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 ZNF571Q7Z3V5 609 aaPredicted RBP10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 TAX1BP1Q86VP1 789 aa10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 GPBP1Q86WP2 473 aa10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 SYCE1Q8N0S2 351 aa10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 MS4A14Q96JA4 679 aa10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 CCDC43Q96MW1 224 aaKnown RBP10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 CEP89Q96ST8 783 aa10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 FGFBP2Q9BYJ0 223 aa10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 TXLNGYQ9BZA5 131 aa10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 TYW1Q9NV66 732 aaKnown RBP10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 NYAP2Q9P242 653 aa10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 FAM153AQ9UHL3 310 aa10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 NFU1Q9UMS0 254 aa10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 JAG2Q9Y219 1238 aa10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 C5orf60A6NFR6 353 aa10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 RAD51CO43502 376 aa10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 BUB1O43683 1085 aa10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 PPP1R37O75864 691 aa10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 UFL1O94874 794 aa10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 TRIM37O94972 964 aa10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 FOSP01100 380 aaPredicted RBP10.11□□□□□ -0.79
PDGFRA-208ENST00000509490 PON1P27169 355 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms