RNA–Protein interactions for RNA: ENST00000508685.1

SH3RF1-203, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 1 (best)

Gene SH3RF1, Length 2,020 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-203ENST00000508685 SSBP05455 408 aaKnown RBP eCLIP12.17□□□□□ -0.46
SH3RF1-203ENST00000508685 IDEP14735 1019 aa12.17□□□□□ -0.46
SH3RF1-203ENST00000508685 PRLRP16471 622 aa12.17□□□□□ -0.46
SH3RF1-203ENST00000508685 VCAM1P19320 739 aa12.17□□□□□ -0.46
SH3RF1-203ENST00000508685 CIITAP33076 1130 aa12.17□□□□□ -0.46
SH3RF1-203ENST00000508685 ACTN2P35609 894 aa12.17□□□□□ -0.46
SH3RF1-203ENST00000508685 ZNF76P36508 570 aa12.17□□□□□ -0.46
SH3RF1-203ENST00000508685 EPS15P42566 896 aa12.17□□□□□ -0.46
SH3RF1-203ENST00000508685 VSNL1P62760 191 aa12.17□□□□□ -0.46
SH3RF1-203ENST00000508685 ITIH3Q06033 890 aa12.17□□□□□ -0.46
SH3RF1-203ENST00000508685 ZSCAN26Q16670 478 aa12.17□□□□□ -0.46
SH3RF1-203ENST00000508685 HYIQ5T013 277 aa12.17□□□□□ -0.46
SH3RF1-203ENST00000508685 NCAPH2Q6IBW4 605 aa12.17□□□□□ -0.46
SH3RF1-203ENST00000508685 WDR59Q6PJI9 974 aa12.17□□□□□ -0.46
SH3RF1-203ENST00000508685 LPAR1Q92633 364 aa12.17□□□□□ -0.46
SH3RF1-203ENST00000508685 WRNIP1Q96S55 665 aa12.17□□□□□ -0.46
SH3RF1-203ENST00000508685 WDR18Q9BV38 432 aa12.17□□□□□ -0.46
SH3RF1-203ENST00000508685 TTYH3Q9C0H2 523 aa12.17□□□□□ -0.46
SH3RF1-203ENST00000508685 CCPG1Q9ULG6 757 aa12.17□□□□□ -0.46
SH3RF1-203ENST00000508685 DICER1Q9UPY3 1922 aaKnown RBP12.17□□□□□ -0.46
SH3RF1-203ENST00000508685 KDM3AQ9Y4C1 1321 aa12.17□□□□□ -0.46
SH3RF1-203ENST00000508685 PVALEFA0A1B0GWK0 134 aa12.16□□□□□ -0.46
SH3RF1-203ENST00000508685 PES1O00541 588 aaKnown RBP12.16□□□□□ -0.46
SH3RF1-203ENST00000508685 NFIBO00712 420 aa12.16□□□□□ -0.46
SH3RF1-203ENST00000508685 TBX3O15119 743 aa12.16□□□□□ -0.46
SH3RF1-203ENST00000508685 ICAM1P05362 532 aa12.16□□□□□ -0.46
SH3RF1-203ENST00000508685 CYP3A4P08684 503 aa12.16□□□□□ -0.46
SH3RF1-203ENST00000508685 HNRNPH3P31942 346 aaKnown RBP12.16□□□□□ -0.46
SH3RF1-203ENST00000508685 AARSP49588 968 aaKnown RBP eCLIP12.16□□□□□ -0.46
SH3RF1-203ENST00000508685 HIRAP54198 1017 aaPredicted RBP12.16□□□□□ -0.46
SH3RF1-203ENST00000508685 KIF5AQ12840 1032 aa12.16□□□□□ -0.46
SH3RF1-203ENST00000508685 TRAF1Q13077 416 aa12.16□□□□□ -0.46
SH3RF1-203ENST00000508685 SPP2Q13103 211 aa12.16□□□□□ -0.46
SH3RF1-203ENST00000508685 SPA17Q15506 151 aa12.16□□□□□ -0.46
SH3RF1-203ENST00000508685 UNC13DQ70J99 1090 aa12.16□□□□□ -0.46
SH3RF1-203ENST00000508685 CPXCR1Q8N123 301 aa12.16□□□□□ -0.46
SH3RF1-203ENST00000508685 GOLGA6L1Q8N7Z2 621 aa12.16□□□□□ -0.46
SH3RF1-203ENST00000508685 PRPF38AQ8NAV1 312 aaKnown RBP12.16□□□□□ -0.46
SH3RF1-203ENST00000508685 GLIS3Q8NEA6 775 aa12.16□□□□□ -0.46
SH3RF1-203ENST00000508685 HOOK2Q96ED9 719 aa12.16□□□□□ -0.46
SH3RF1-203ENST00000508685 DUSP9Q99956 384 aaKnown RBP12.16□□□□□ -0.46
SH3RF1-203ENST00000508685 NT5C3AQ9H0P0 336 aa12.16□□□□□ -0.46
SH3RF1-203ENST00000508685 HOMER2Q9NSB8 354 aa12.16□□□□□ -0.46
SH3RF1-203ENST00000508685 EMILIN3Q9NT22 766 aa12.16□□□□□ -0.46
SH3RF1-203ENST00000508685 MRPL11Q9Y3B7 192 aaKnown RBP12.16□□□□□ -0.46
SH3RF1-203ENST00000508685 H3BQF6 201 aa12.16□□□□□ -0.46
SH3RF1-203ENST00000508685 MEIS1O00470 390 aa12.16□□□□□ -0.46
SH3RF1-203ENST00000508685 FLOT1O75955 427 aa12.16□□□□□ -0.46
SH3RF1-203ENST00000508685 MTIF2P46199 727 aaKnown RBP12.16□□□□□ -0.46
SH3RF1-203ENST00000508685 HERVK_113P62684 666 aa12.16□□□□□ -0.46
SH3RF1-203ENST00000508685 CACNB1Q02641 598 aaPredicted RBP12.16□□□□□ -0.46
SH3RF1-203ENST00000508685 RAD51AP2Q09MP3 1159 aa12.16□□□□□ -0.46
SH3RF1-203ENST00000508685 ANKRD40Q6AI12 368 aa12.16□□□□□ -0.46
SH3RF1-203ENST00000508685 CATSPER3Q86XQ3 398 aa12.16□□□□□ -0.46
SH3RF1-203ENST00000508685 GPC2Q8N158 579 aa12.16□□□□□ -0.46
SH3RF1-203ENST00000508685 PURBQ96QR8 312 aaKnown RBP12.16□□□□□ -0.46
SH3RF1-203ENST00000508685 EDEM3Q9BZQ6 932 aa12.16□□□□□ -0.46
SH3RF1-203ENST00000508685 NHEJ1Q9H9Q4 299 aaPredicted RBP12.16□□□□□ -0.46
SH3RF1-203ENST00000508685 VPS18Q9P253 973 aa12.16□□□□□ -0.46
SH3RF1-203ENST00000508685 VAV3Q9UKW4 847 aa12.16□□□□□ -0.46
SH3RF1-203ENST00000508685 NPHP3-ACAD11A0A0J9YXS1 232 aa12.15□□□□□ -0.46
SH3RF1-203ENST00000508685 B4DLN1 442 aa12.15□□□□□ -0.46
SH3RF1-203ENST00000508685 VAV2P52735 878 aa12.15□□□□□ -0.46
SH3RF1-203ENST00000508685 PSMC6P62333 389 aa12.15□□□□□ -0.46
SH3RF1-203ENST00000508685 CYP4A11Q02928 519 aa12.15□□□□□ -0.46
SH3RF1-203ENST00000508685 HAUS3Q68CZ6 603 aa12.15□□□□□ -0.46
SH3RF1-203ENST00000508685 DLK2Q6UY11 383 aa12.15□□□□□ -0.46
SH3RF1-203ENST00000508685 APOBEC3FQ8IUX4 373 aaKnown RBP12.15□□□□□ -0.46
SH3RF1-203ENST00000508685 SCYL3Q8IZE3 742 aa12.15□□□□□ -0.46
SH3RF1-203ENST00000508685 TRIM58Q8NG06 486 aa12.15□□□□□ -0.46
SH3RF1-203ENST00000508685 NEK11Q8NG66 645 aa12.15□□□□□ -0.46
SH3RF1-203ENST00000508685 DNAJC19Q96DA6 116 aa12.15□□□□□ -0.46
SH3RF1-203ENST00000508685 WNK4Q96J92 1243 aa12.15□□□□□ -0.46
SH3RF1-203ENST00000508685 FAM20AQ96MK3 541 aa12.15□□□□□ -0.46
SH3RF1-203ENST00000508685 NOC4LQ9BVI4 516 aaKnown RBP12.15□□□□□ -0.46
SH3RF1-203ENST00000508685 RPAP3Q9H6T3 665 aaPredicted RBP12.15□□□□□ -0.46
SH3RF1-203ENST00000508685 RAVER2Q9HCJ3 691 aaKnown RBP12.15□□□□□ -0.46
SH3RF1-203ENST00000508685 COL20A1Q9P218 1284 aa12.15□□□□□ -0.46
SH3RF1-203ENST00000508685 SSC5DA1L4H1 1573 aa12.15□□□□□ -0.46
SH3RF1-203ENST00000508685 DOCK1Q14185 1865 aa12.15□□□□□ -0.46
SH3RF1-203ENST00000508685 EML1O00423 815 aa12.15□□□□□ -0.47
SH3RF1-203ENST00000508685 ABL1P00519 1130 aa12.15□□□□□ -0.47
SH3RF1-203ENST00000508685 PLA2G4BP0C869 781 aa12.15□□□□□ -0.47
SH3RF1-203ENST00000508685 SPATA31C1P0DKV0 1188 aa12.15□□□□□ -0.47
SH3RF1-203ENST00000508685 PTPRAP18433 802 aa12.15□□□□□ -0.47
SH3RF1-203ENST00000508685 LMAN1P49257 510 aa12.15□□□□□ -0.47
SH3RF1-203ENST00000508685 SLC20A2Q08357 652 aa12.15□□□□□ -0.47
SH3RF1-203ENST00000508685 EHHADHQ08426 723 aa12.15□□□□□ -0.47
SH3RF1-203ENST00000508685 PSMD2Q13200 908 aa12.15□□□□□ -0.47
SH3RF1-203ENST00000508685 DCAF15Q66K64 600 aa12.15□□□□□ -0.47
SH3RF1-203ENST00000508685 NOA1Q8NC60 698 aaKnown RBP12.15□□□□□ -0.47
SH3RF1-203ENST00000508685 CNOT6LQ96LI5 555 aaKnown RBP12.15□□□□□ -0.47
SH3RF1-203ENST00000508685 CCDC42Q96M95 316 aa12.15□□□□□ -0.47
SH3RF1-203ENST00000508685 PCMTD1Q96MG8 357 aaPredicted RBP12.15□□□□□ -0.47
SH3RF1-203ENST00000508685 SEMA6BQ9H3T3 888 aa12.15□□□□□ -0.47
SH3RF1-203ENST00000508685 SLC38A10Q9HBR0 1119 aa12.15□□□□□ -0.47
SH3RF1-203ENST00000508685 NMRK2Q9NPI5 230 aa12.15□□□□□ -0.47
SH3RF1-203ENST00000508685 JRKLQ9Y4A0 524 aa12.15□□□□□ -0.47
SH3RF1-203ENST00000508685 PCNTO95613 3336 aa12.14□□□□□ -0.47
SH3RF1-203ENST00000508685 NKRFO15226 690 aaKnown RBP eCLIP12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms