RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 TAF1LQ8IZX4 1826 aa5.93□□□□□ -1.46
NUP54-206ENST00000508465 HTATSF1O43719 755 aaKnown RBP5.93□□□□□ -1.46
NUP54-206ENST00000508465 CYBBP04839 570 aa5.93□□□□□ -1.46
NUP54-206ENST00000508465 GSNP06396 782 aa5.93□□□□□ -1.46
NUP54-206ENST00000508465 MSL3P1P0C860 447 aa5.93□□□□□ -1.46
NUP54-206ENST00000508465 GARTP22102 1010 aa5.93□□□□□ -1.46
NUP54-206ENST00000508465 YY1P25490 414 aa5.93□□□□□ -1.46
NUP54-206ENST00000508465 LRRFIP1Q32MZ4 808 aaKnown RBP5.93□□□□□ -1.46
NUP54-206ENST00000508465 KRTAP5-3Q6L8H2 238 aa5.93□□□□□ -1.46
NUP54-206ENST00000508465 NLRC3Q7RTR2 1065 aa5.93□□□□□ -1.46
NUP54-206ENST00000508465 NGEFQ8N5V2 710 aa5.93□□□□□ -1.46
NUP54-206ENST00000508465 FNIP1Q8TF40 1166 aa5.93□□□□□ -1.46
NUP54-206ENST00000508465 ATG4CQ96DT6 458 aa5.93□□□□□ -1.46
NUP54-206ENST00000508465 FAM161BQ96MY7 647 aa5.93□□□□□ -1.46
NUP54-206ENST00000508465 LRRC3Q9BY71 257 aa5.93□□□□□ -1.46
NUP54-206ENST00000508465 PNNQ9H307 717 aaKnown RBP5.93□□□□□ -1.46
NUP54-206ENST00000508465 EHMT1Q9H9B1 1298 aa5.93□□□□□ -1.46
NUP54-206ENST00000508465 SUPT16HQ9Y5B9 1047 aaKnown RBP5.93□□□□□ -1.46
NUP54-206ENST00000508465 PMF1-BGLAPU3KQ54 211 aa5.93□□□□□ -1.46
NUP54-206ENST00000508465 C5P01031 1676 aa5.93□□□□□ -1.46
NUP54-206ENST00000508465 SOS1Q07889 1333 aaPredicted RBP5.93□□□□□ -1.46
NUP54-206ENST00000508465 MYH14Q7Z406 1995 aaKnown RBP5.93□□□□□ -1.46
NUP54-206ENST00000508465 CEMIPQ8WUJ3 1361 aa5.93□□□□□ -1.46
NUP54-206ENST00000508465 HEG1Q9ULI3 1381 aa5.93□□□□□ -1.46
NUP54-206ENST00000508465 SNRPA1P09661 255 aaKnown RBP5.92□□□□□ -1.46
NUP54-206ENST00000508465 TM4SF1P30408 202 aa5.92□□□□□ -1.46
NUP54-206ENST00000508465 CTSKP43235 329 aa5.92□□□□□ -1.46
NUP54-206ENST00000508465 EIF5P55010 431 aaKnown RBP5.92□□□□□ -1.46
NUP54-206ENST00000508465 MVKQ03426 396 aa5.92□□□□□ -1.46
NUP54-206ENST00000508465 DDR1Q08345 913 aa5.92□□□□□ -1.46
NUP54-206ENST00000508465 CWF19L1Q69YN2 538 aaKnown RBP5.92□□□□□ -1.46
NUP54-206ENST00000508465 FBXL19Q6PCT2 694 aa5.92□□□□□ -1.46
NUP54-206ENST00000508465 LIPIQ6XZB0 460 aa5.92□□□□□ -1.46
NUP54-206ENST00000508465 FERMT3Q86UX7 667 aa5.92□□□□□ -1.46
NUP54-206ENST00000508465 TMEM52Q8NDY8 209 aa5.92□□□□□ -1.46
NUP54-206ENST00000508465 RGS22Q8NE09 1264 aa5.92□□□□□ -1.46
NUP54-206ENST00000508465 RUNDC1Q96C34 613 aa5.92□□□□□ -1.46
NUP54-206ENST00000508465 DSCC1Q9BVC3 393 aa5.92□□□□□ -1.46
NUP54-206ENST00000508465 TEX13AQ9BXU3 409 aaPredicted RBP5.92□□□□□ -1.46
NUP54-206ENST00000508465 VTI1BQ9UEU0 232 aa5.92□□□□□ -1.46
NUP54-206ENST00000508465 NARFQ9UHQ1 456 aa5.92□□□□□ -1.46
NUP54-206ENST00000508465 DBR1Q9UK59 544 aaKnown RBP5.92□□□□□ -1.46
NUP54-206ENST00000508465 CD2APQ9Y5K6 639 aa5.92□□□□□ -1.46
NUP54-206ENST00000508465 USP42Q9H9J4 1324 aaKnown RBP5.92□□□□□ -1.46
NUP54-206ENST00000508465 KCPQ6ZWJ8 1503 aa5.91□□□□□ -1.46
NUP54-206ENST00000508465 APAF1O14727 1248 aa5.91□□□□□ -1.46
NUP54-206ENST00000508465 SRGAP3O43295 1099 aa5.91□□□□□ -1.46
NUP54-206ENST00000508465 NCAM1P13591 858 aa5.91□□□□□ -1.46
NUP54-206ENST00000508465 DPEP1P16444 411 aa5.91□□□□□ -1.46
NUP54-206ENST00000508465 EIF4A3P38919 411 aaKnown RBP5.91□□□□□ -1.46
NUP54-206ENST00000508465 MAGEA10P43363 369 aaPredicted RBP5.91□□□□□ -1.46
NUP54-206ENST00000508465 EIF4A1P60842 406 aaKnown RBP5.91□□□□□ -1.46
NUP54-206ENST00000508465 AUHQ13825 339 aaKnown RBP5.91□□□□□ -1.46
NUP54-206ENST00000508465 KRT24Q2M2I5 525 aa5.91□□□□□ -1.46
NUP54-206ENST00000508465 VWA3BQ502W6 1294 aa5.91□□□□□ -1.46
NUP54-206ENST00000508465 TBC1D9BQ66K14 1250 aa5.91□□□□□ -1.46
NUP54-206ENST00000508465 BICRALQ6AI39 1079 aa5.91□□□□□ -1.46
NUP54-206ENST00000508465 NPM2Q86SE8 214 aaKnown RBP5.91□□□□□ -1.46
NUP54-206ENST00000508465 SPATA25Q9BR10 227 aa5.91□□□□□ -1.46
NUP54-206ENST00000508465 RNF38Q9H0F5 515 aa5.91□□□□□ -1.46
NUP54-206ENST00000508465 KBTBD4Q9NVX7 518 aa5.91□□□□□ -1.46
NUP54-206ENST00000508465 TSPYL4Q9UJ04 414 aa5.91□□□□□ -1.46
NUP54-206ENST00000508465 UBR3Q6ZT12 1888 aa5.91□□□□□ -1.46
NUP54-206ENST00000508465 MRC1P22897 1456 aa5.9□□□□□ -1.46
NUP54-206ENST00000508465 POLRMTO00411 1230 aaKnown RBP5.9□□□□□ -1.46
NUP54-206ENST00000508465 ANP32CO43423 234 aa5.9□□□□□ -1.46
NUP54-206ENST00000508465 SERPINB2P05120 415 aa5.9□□□□□ -1.46
NUP54-206ENST00000508465 DBHP09172 617 aa5.9□□□□□ -1.46
NUP54-206ENST00000508465 GSTM1P09488 218 aa5.9□□□□□ -1.46
NUP54-206ENST00000508465 PDIA4P13667 645 aaKnown RBP5.9□□□□□ -1.46
NUP54-206ENST00000508465 MYL6BP14649 208 aa5.9□□□□□ -1.46
NUP54-206ENST00000508465 EIF2S2P20042 333 aaKnown RBP5.9□□□□□ -1.46
NUP54-206ENST00000508465 KCNA3P22001 575 aa5.9□□□□□ -1.46
NUP54-206ENST00000508465 CHRNA5P30532 468 aa5.9□□□□□ -1.46
NUP54-206ENST00000508465 NOP2P46087 812 aaKnown RBP5.9□□□□□ -1.46
NUP54-206ENST00000508465 CRTC3Q6UUV7 619 aa5.9□□□□□ -1.46
NUP54-206ENST00000508465 SAPCD2Q86UD0 394 aa5.9□□□□□ -1.46
NUP54-206ENST00000508465 TMEM192Q8IY95 271 aa5.9□□□□□ -1.46
NUP54-206ENST00000508465 PNISRQ8TF01 805 aaKnown RBP5.9□□□□□ -1.46
NUP54-206ENST00000508465 DHRS1Q96LJ7 313 aa5.9□□□□□ -1.46
NUP54-206ENST00000508465 SLC6A18Q96N87 628 aa5.9□□□□□ -1.46
NUP54-206ENST00000508465 PDLIM7Q9NR12 457 aa5.9□□□□□ -1.46
NUP54-206ENST00000508465 TJP1Q07157 1748 aa5.89□□□□□ -1.47
NUP54-206ENST00000508465 QSER1Q2KHR3 1735 aa5.89□□□□□ -1.47
NUP54-206ENST00000508465 A0A087WZG4 1122 aa5.89□□□□□ -1.47
NUP54-206ENST00000508465 A0A1B0GTL3 188 aa5.89□□□□□ -1.47
NUP54-206ENST00000508465 SH3D21A4FU49 640 aa5.89□□□□□ -1.47
NUP54-206ENST00000508465 F8W031 263 aaPredicted RBP5.89□□□□□ -1.47
NUP54-206ENST00000508465 GREM1O60565 184 aa5.89□□□□□ -1.47
NUP54-206ENST00000508465 CAMTA2O94983 1202 aa5.89□□□□□ -1.47
NUP54-206ENST00000508465 ANXA1P04083 346 aa5.89□□□□□ -1.47
NUP54-206ENST00000508465 NME1P15531 152 aaKnown RBP5.89□□□□□ -1.47
NUP54-206ENST00000508465 MCM4P33991 863 aa5.89□□□□□ -1.47
NUP54-206ENST00000508465 IL6STP40189 918 aaPredicted RBP5.89□□□□□ -1.47
NUP54-206ENST00000508465 HLFQ16534 295 aa5.89□□□□□ -1.47
NUP54-206ENST00000508465 CYP2R1Q6VVX0 501 aa5.89□□□□□ -1.47
NUP54-206ENST00000508465 GK5Q6ZS86 529 aa5.89□□□□□ -1.47
NUP54-206ENST00000508465 TTLL7Q6ZT98 887 aa5.89□□□□□ -1.47
NUP54-206ENST00000508465 USP48Q86UV5 1035 aa5.89□□□□□ -1.47
NUP54-206ENST00000508465 ADGRG2Q8IZP9 1017 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms