RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 SH2B2O14492 632 aaPredicted RBP24.06■■□□□ 1.44
SQSTM1-210ENST00000506042 KCNA2P16389 499 aa24.06■■□□□ 1.44
SQSTM1-210ENST00000506042 MARK3P27448 753 aa24.06■■□□□ 1.44
SQSTM1-210ENST00000506042 SLC26A2P50443 739 aa24.06■■□□□ 1.44
SQSTM1-210ENST00000506042 MRPS6P82932 125 aaKnown RBP24.06■■□□□ 1.44
SQSTM1-210ENST00000506042 ZNF713Q8N859 430 aaPredicted RBP24.06■■□□□ 1.44
SQSTM1-210ENST00000506042 BCAS3Q9H6U6 928 aa24.06■■□□□ 1.44
SQSTM1-210ENST00000506042 JADE2Q9NQC1 790 aa24.06■■□□□ 1.44
SQSTM1-210ENST00000506042 SLC9A2Q9UBY0 812 aa24.06■■□□□ 1.44
SQSTM1-210ENST00000506042 TCEAL9Q9UHQ7 104 aa24.06■■□□□ 1.44
SQSTM1-210ENST00000506042 MBLAC1A4D2B0 266 aaPredicted RBP24.05■■□□□ 1.44
SQSTM1-210ENST00000506042 CHRNA1P02708 482 aa24.05■■□□□ 1.44
SQSTM1-210ENST00000506042 PPP1R18Q6NYC8 613 aa24.05■■□□□ 1.44
SQSTM1-210ENST00000506042 FANCBQ8NB91 859 aa24.05■■□□□ 1.44
SQSTM1-210ENST00000506042 DNAJB3Q8WWF6 145 aa24.05■■□□□ 1.44
SQSTM1-210ENST00000506042 LRFN2Q9ULH4 789 aa24.05■■□□□ 1.44
SQSTM1-210ENST00000506042 PCDHA6Q9UN73 950 aa24.05■■□□□ 1.44
SQSTM1-210ENST00000506042 PCDHA8Q9Y5H6 950 aa24.05■■□□□ 1.44
SQSTM1-210ENST00000506042 UBIAD1Q9Y5Z9 338 aa24.05■■□□□ 1.44
SQSTM1-210ENST00000506042 CDY2AQ9Y6F7 541 aa24.05■■□□□ 1.44
SQSTM1-210ENST00000506042 FSD2A1L4K1 749 aa24.04■■□□□ 1.44
SQSTM1-210ENST00000506042 H3BQ06 376 aaPredicted RBP24.04■■□□□ 1.44
SQSTM1-210ENST00000506042 IL9P15248 144 aa24.04■■□□□ 1.44
SQSTM1-210ENST00000506042 IGBP1P78318 339 aa24.04■■□□□ 1.44
SQSTM1-210ENST00000506042 LPIN1Q14693 890 aa24.04■■□□□ 1.44
SQSTM1-210ENST00000506042 FBXO47Q5MNV8 452 aa24.04■■□□□ 1.44
SQSTM1-210ENST00000506042 NME8Q8N427 588 aa24.04■■□□□ 1.44
SQSTM1-210ENST00000506042 SRBD1Q8N5C6 995 aaKnown RBP24.04■■□□□ 1.44
SQSTM1-210ENST00000506042 P2RX5Q93086 422 aa24.04■■□□□ 1.44
SQSTM1-210ENST00000506042 UIMC1Q96RL1 719 aa24.04■■□□□ 1.44
SQSTM1-210ENST00000506042 PKD2L1Q9P0L9 805 aa24.04■■□□□ 1.44
SQSTM1-210ENST00000506042 DCXO43602 365 aa24.03■■□□□ 1.44
SQSTM1-210ENST00000506042 PLEKHA8P1O95397 391 aa24.03■■□□□ 1.44
SQSTM1-210ENST00000506042 ITGB5P18084 799 aa24.03■■□□□ 1.44
SQSTM1-210ENST00000506042 NAPAP54920 295 aa24.03■■□□□ 1.44
SQSTM1-210ENST00000506042 PAK2Q13177 524 aa24.03■■□□□ 1.44
SQSTM1-210ENST00000506042 NPAS4Q8IUM7 802 aa24.03■■□□□ 1.44
SQSTM1-210ENST00000506042 CMTR2Q8IYT2 770 aaKnown RBP24.03■■□□□ 1.44
SQSTM1-210ENST00000506042 CLP1Q92989 425 aaKnown RBP24.03■■□□□ 1.44
SQSTM1-210ENST00000506042 TRPV2Q9Y5S1 764 aa24.03■■□□□ 1.44
SQSTM1-210ENST00000506042 NFASCO94856 1347 aa24.03■■□□□ 1.44
SQSTM1-210ENST00000506042 GSTTP1A0A1W2PQM5 241 aa24.02■■□□□ 1.44
SQSTM1-210ENST00000506042 ENPP3O14638 875 aa24.02■■□□□ 1.44
SQSTM1-210ENST00000506042 ZNF76P36508 570 aa24.02■■□□□ 1.44
SQSTM1-210ENST00000506042 FAM160B1Q5W0V3 765 aa24.02■■□□□ 1.44
SQSTM1-210ENST00000506042 MCTP2Q6DN12 878 aa24.02■■□□□ 1.44
SQSTM1-210ENST00000506042 RUFY4Q6ZNE9 571 aa24.02■■□□□ 1.44
SQSTM1-210ENST00000506042 PLPPR4Q7Z2D5 763 aa24.02■■□□□ 1.44
SQSTM1-210ENST00000506042 MICU3Q86XE3 530 aa24.02■■□□□ 1.44
SQSTM1-210ENST00000506042 ADHFE1Q8IWW8 467 aa24.02■■□□□ 1.44
SQSTM1-210ENST00000506042 FAM49AQ9H0Q0 323 aaPredicted RBP24.02■■□□□ 1.44
SQSTM1-210ENST00000506042 AAASQ9NRG9 546 aa24.02■■□□□ 1.44
SQSTM1-210ENST00000506042 SUPT16HQ9Y5B9 1047 aaKnown RBP24.02■■□□□ 1.44
SQSTM1-210ENST00000506042 ATP9AO75110 1047 aa24.01■■□□□ 1.43
SQSTM1-210ENST00000506042 MMP1P03956 469 aa24.01■■□□□ 1.43
SQSTM1-210ENST00000506042 INSRRP14616 1297 aa24.01■■□□□ 1.43
SQSTM1-210ENST00000506042 MGAT3Q09327 533 aa24.01■■□□□ 1.43
SQSTM1-210ENST00000506042 UBE2SQ16763 222 aa24.01■■□□□ 1.43
SQSTM1-210ENST00000506042 TMTC3Q6ZXV5 915 aa24.01■■□□□ 1.43
SQSTM1-210ENST00000506042 CCDC82Q8N4S0 544 aa24.01■■□□□ 1.43
SQSTM1-210ENST00000506042 MXRA8Q9BRK3 442 aa24.01■■□□□ 1.43
SQSTM1-210ENST00000506042 KCNH6Q9H252 994 aa24.01■■□□□ 1.43
SQSTM1-210ENST00000506042 ANO2Q9NQ90 1003 aa24.01■■□□□ 1.43
SQSTM1-210ENST00000506042 REV3LO60673 3130 aa24.01■■□□□ 1.43
SQSTM1-210ENST00000506042 FAM86C2PA6NEL3 165 aa24■■□□□ 1.43
SQSTM1-210ENST00000506042 SLC27A2O14975 620 aa24■■□□□ 1.43
SQSTM1-210ENST00000506042 DGKIO75912 1065 aa24■■□□□ 1.43
SQSTM1-210ENST00000506042 STAT5BP51692 787 aa24■■□□□ 1.43
SQSTM1-210ENST00000506042 ADCY7P51828 1080 aa24■■□□□ 1.43
SQSTM1-210ENST00000506042 AP3B2Q13367 1082 aa24■■□□□ 1.43
SQSTM1-210ENST00000506042 COL19A1Q14993 1142 aa24■■□□□ 1.43
SQSTM1-210ENST00000506042 SGMS1Q86VZ5 419 aa24■■□□□ 1.43
SQSTM1-210ENST00000506042 KCNH7Q9NS40 1196 aa24■■□□□ 1.43
SQSTM1-210ENST00000506042 PCDHA2Q9Y5H9 948 aa24■■□□□ 1.43
SQSTM1-210ENST00000506042 TAF6LQ9Y6J9 622 aa24■■□□□ 1.43
SQSTM1-210ENST00000506042 XIRP2A4UGR9 3374 aa24■■□□□ 1.43
SQSTM1-210ENST00000506042 SMIM35A0A1B0GVV1 85 aa23.98■■□□□ 1.43
SQSTM1-210ENST00000506042 POTEB3A0JP26 581 aa23.98■■□□□ 1.43
SQSTM1-210ENST00000506042 BACH1O14867 736 aa23.98■■□□□ 1.43
SQSTM1-210ENST00000506042 SCG2P13521 617 aa23.98■■□□□ 1.43
SQSTM1-210ENST00000506042 RXRAP19793 462 aa23.98■■□□□ 1.43
SQSTM1-210ENST00000506042 HOXD11P31277 338 aaPredicted RBP23.98■■□□□ 1.43
SQSTM1-210ENST00000506042 CD52P31358 61 aa23.98■■□□□ 1.43
SQSTM1-210ENST00000506042 NDUFV1P49821 464 aa23.98■■□□□ 1.43
SQSTM1-210ENST00000506042 FGD1P98174 961 aa23.98■■□□□ 1.43
SQSTM1-210ENST00000506042 KRT76Q01546 638 aa23.98■■□□□ 1.43
SQSTM1-210ENST00000506042 SMAD4Q13485 552 aaKnown RBP23.98■■□□□ 1.43
SQSTM1-210ENST00000506042 CEP55Q53EZ4 464 aa23.98■■□□□ 1.43
SQSTM1-210ENST00000506042 CREB3L3Q68CJ9 461 aa23.98■■□□□ 1.43
SQSTM1-210ENST00000506042 POTEBQ6S5H4 581 aa23.98■■□□□ 1.43
SQSTM1-210ENST00000506042 CMTR1Q8N1G2 835 aaKnown RBP23.98■■□□□ 1.43
SQSTM1-210ENST00000506042 CCDC12Q8WUD4 166 aaPredicted RBP23.98■■□□□ 1.43
SQSTM1-210ENST00000506042 ZNF689Q96CS4 500 aaPredicted RBP23.98■■□□□ 1.43
SQSTM1-210ENST00000506042 ESYT1Q9BSJ8 1104 aa23.98■■□□□ 1.43
SQSTM1-210ENST00000506042 CELF4Q9BZC1 486 aaKnown RBP23.98■■□□□ 1.43
SQSTM1-210ENST00000506042 CD320Q9NPF0 282 aa23.98■■□□□ 1.43
SQSTM1-210ENST00000506042 RIC8AQ9NPQ8 531 aa23.98■■□□□ 1.43
SQSTM1-210ENST00000506042 CCDC196A0A1B0GTZ2 297 aa23.97■■□□□ 1.43
SQSTM1-210ENST00000506042 SRGAP2BP0DMP2 458 aa23.97■■□□□ 1.43
SQSTM1-210ENST00000506042 ACTR2P61160 394 aa23.97■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms