RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 LARP6Q9BRS8 491 aaKnown RBP20.49■□□□□ 0.87
SQSTM1-209ENST00000504627 SMARCAD1Q9H4L7 1026 aa20.49■□□□□ 0.87
SQSTM1-209ENST00000504627 AZI2Q9H6S1 392 aa20.49■□□□□ 0.87
SQSTM1-209ENST00000504627 SLC9A2Q9UBY0 812 aa20.49■□□□□ 0.87
SQSTM1-209ENST00000504627 TAP1Q03518 808 aa20.48■□□□□ 0.87
SQSTM1-209ENST00000504627 PPFIA1Q13136 1202 aa20.48■□□□□ 0.87
SQSTM1-209ENST00000504627 JAKMIP3Q5VZ66 844 aa20.48■□□□□ 0.87
SQSTM1-209ENST00000504627 SEPT8Q92599 483 aa20.48■□□□□ 0.87
SQSTM1-209ENST00000504627 SLKQ9H2G2 1235 aaPredicted RBP20.48■□□□□ 0.87
SQSTM1-209ENST00000504627 C6orf50Q9HD87 102 aa20.48■□□□□ 0.87
SQSTM1-209ENST00000504627 CHD7Q9P2D1 2997 aa20.47■□□□□ 0.87
SQSTM1-209ENST00000504627 RFXAPO00287 272 aa20.47■□□□□ 0.87
SQSTM1-209ENST00000504627 GTPBP6O43824 516 aaPredicted RBP20.47■□□□□ 0.87
SQSTM1-209ENST00000504627 AMHP03971 560 aa20.47■□□□□ 0.87
SQSTM1-209ENST00000504627 ARP10275 920 aa20.47■□□□□ 0.87
SQSTM1-209ENST00000504627 SREBF1P36956 1147 aa20.47■□□□□ 0.87
SQSTM1-209ENST00000504627 CLK2P49760 499 aaKnown RBP20.47■□□□□ 0.87
SQSTM1-209ENST00000504627 ADAM17P78536 824 aa20.47■□□□□ 0.87
SQSTM1-209ENST00000504627 ST3GAL1Q11201 340 aa20.47■□□□□ 0.87
SQSTM1-209ENST00000504627 FAM117BQ6P1L5 589 aa20.47■□□□□ 0.87
SQSTM1-209ENST00000504627 RAD9AQ99638 391 aa20.47■□□□□ 0.87
SQSTM1-209ENST00000504627 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.47■□□□□ 0.87
SQSTM1-209ENST00000504627 PRPF3O43395 683 aaKnown RBP20.46■□□□□ 0.87
SQSTM1-209ENST00000504627 GJB5O95377 273 aa20.46■□□□□ 0.87
SQSTM1-209ENST00000504627 PDIA3P30101 505 aaKnown RBP20.46■□□□□ 0.87
SQSTM1-209ENST00000504627 GRIK4Q16099 956 aa20.46■□□□□ 0.87
SQSTM1-209ENST00000504627 PLEKHG4Q58EX7 1191 aa20.46■□□□□ 0.87
SQSTM1-209ENST00000504627 TAF2Q6P1X5 1199 aa20.46■□□□□ 0.87
SQSTM1-209ENST00000504627 RSPH3Q86UC2 560 aa20.46■□□□□ 0.87
SQSTM1-209ENST00000504627 CCDC83Q8IWF9 413 aa20.46■□□□□ 0.87
SQSTM1-209ENST00000504627 MYOCDQ8IZQ8 938 aa20.46■□□□□ 0.87
SQSTM1-209ENST00000504627 TNPO1Q92973 898 aaKnown RBP20.46■□□□□ 0.87
SQSTM1-209ENST00000504627 PHKBQ93100 1093 aa20.46■□□□□ 0.87
SQSTM1-209ENST00000504627 TSPYL2Q9H2G4 693 aaPredicted RBP20.46■□□□□ 0.87
SQSTM1-209ENST00000504627 PRDM6Q9NQX0 595 aa20.46■□□□□ 0.87
SQSTM1-209ENST00000504627 TUBE1Q9UJT0 475 aa20.46■□□□□ 0.87
SQSTM1-209ENST00000504627 NFASCO94856 1347 aa20.46■□□□□ 0.87
SQSTM1-209ENST00000504627 LCHNA4D1U4 455 aa20.45■□□□□ 0.86
SQSTM1-209ENST00000504627 RBAK-RBAKDNI3L0D1 243 aa20.45■□□□□ 0.86
SQSTM1-209ENST00000504627 PPFIA3O75145 1194 aa20.45■□□□□ 0.86
SQSTM1-209ENST00000504627 ARHGEF15O94989 841 aa20.45■□□□□ 0.86
SQSTM1-209ENST00000504627 GNA11P29992 359 aa20.45■□□□□ 0.86
SQSTM1-209ENST00000504627 IGBP1P78318 339 aa20.45■□□□□ 0.86
SQSTM1-209ENST00000504627 CCT2P78371 535 aaKnown RBP20.45■□□□□ 0.86
SQSTM1-209ENST00000504627 MCTP2Q6DN12 878 aa20.45■□□□□ 0.86
SQSTM1-209ENST00000504627 LIN28BQ6ZN17 250 aaKnown RBP eCLIP20.45■□□□□ 0.86
SQSTM1-209ENST00000504627 SYMPKQ92797 1274 aaKnown RBP20.45■□□□□ 0.86
SQSTM1-209ENST00000504627 AGO4Q9HCK5 861 aaKnown RBP20.45■□□□□ 0.86
SQSTM1-209ENST00000504627 TRPC6Q9Y210 931 aa20.45■□□□□ 0.86
SQSTM1-209ENST00000504627 KAT6AQ92794 2004 aa20.44■□□□□ 0.86
SQSTM1-209ENST00000504627 ESYT2A0FGR8 921 aa20.44■□□□□ 0.86
SQSTM1-209ENST00000504627 MEIS1O00470 390 aa20.44■□□□□ 0.86
SQSTM1-209ENST00000504627 ACTR2P61160 394 aa20.44■□□□□ 0.86
SQSTM1-209ENST00000504627 SCRN1Q12765 414 aa20.44■□□□□ 0.86
SQSTM1-209ENST00000504627 PKN1Q16512 942 aa20.44■□□□□ 0.86
SQSTM1-209ENST00000504627 RUFY4Q6ZNE9 571 aa20.44■□□□□ 0.86
SQSTM1-209ENST00000504627 PLA2G4DQ86XP0 818 aa20.44■□□□□ 0.86
SQSTM1-209ENST00000504627 REXO1Q8N1G1 1221 aaKnown RBP20.44■□□□□ 0.86
SQSTM1-209ENST00000504627 NECAB1Q8N987 351 aa20.44■□□□□ 0.86
SQSTM1-209ENST00000504627 LLPHQ9BRT6 129 aaKnown RBP20.44■□□□□ 0.86
SQSTM1-209ENST00000504627 SLC26A6Q9BXS9 759 aa20.44■□□□□ 0.86
SQSTM1-209ENST00000504627 ZMYND12Q9H0C1 365 aa20.44■□□□□ 0.86
SQSTM1-209ENST00000504627 THEGQ9P2T0 379 aa20.44■□□□□ 0.86
SQSTM1-209ENST00000504627 EPOPA6NHQ4 379 aa20.43■□□□□ 0.86
SQSTM1-209ENST00000504627 RRN3P2A6NIE6 340 aa20.43■□□□□ 0.86
SQSTM1-209ENST00000504627 DDX39AO00148 427 aaKnown RBP20.43■□□□□ 0.86
SQSTM1-209ENST00000504627 STAT5BP51692 787 aa20.43■□□□□ 0.86
SQSTM1-209ENST00000504627 STK3Q13188 491 aa20.43■□□□□ 0.86
SQSTM1-209ENST00000504627 ITGB3BPQ13352 177 aaPredicted RBP20.43■□□□□ 0.86
SQSTM1-209ENST00000504627 SKIV2LQ15477 1246 aaKnown RBP20.43■□□□□ 0.86
SQSTM1-209ENST00000504627 TJAP1Q5JTD0 557 aa20.43■□□□□ 0.86
SQSTM1-209ENST00000504627 NIPA1Q7RTP0 329 aa20.43■□□□□ 0.86
SQSTM1-209ENST00000504627 CCDC148Q8NFR7 591 aa20.43■□□□□ 0.86
SQSTM1-209ENST00000504627 BICD2Q8TD16 824 aa20.43■□□□□ 0.86
SQSTM1-209ENST00000504627 APBB2Q92870 758 aa20.43■□□□□ 0.86
SQSTM1-209ENST00000504627 PCYT2Q99447 389 aa20.43■□□□□ 0.86
SQSTM1-209ENST00000504627 RNF26Q9BY78 433 aaPredicted RBP20.43■□□□□ 0.86
SQSTM1-209ENST00000504627 IFIH1Q9BYX4 1025 aaKnown RBP20.43■□□□□ 0.86
SQSTM1-209ENST00000504627 INSL6Q9Y581 213 aa20.43■□□□□ 0.86
SQSTM1-209ENST00000504627 INSRRP14616 1297 aa20.42■□□□□ 0.86
SQSTM1-209ENST00000504627 IFNAR1P17181 557 aa20.42■□□□□ 0.86
SQSTM1-209ENST00000504627 FAM26DQ5JW98 314 aa20.42■□□□□ 0.86
SQSTM1-209ENST00000504627 PLPPR4Q7Z2D5 763 aa20.42■□□□□ 0.86
SQSTM1-209ENST00000504627 RPAINQ86UA6 219 aa20.42■□□□□ 0.86
SQSTM1-209ENST00000504627 DNAJB3Q8WWF6 145 aa20.42■□□□□ 0.86
SQSTM1-209ENST00000504627 NCOA5Q9HCD5 579 aaKnown RBP20.42■□□□□ 0.86
SQSTM1-209ENST00000504627 MTUS1Q9ULD2 1270 aa20.42■□□□□ 0.86
SQSTM1-209ENST00000504627 CIZ1Q9ULV3 898 aaPredicted RBP20.42■□□□□ 0.86
SQSTM1-209ENST00000504627 MTCH2Q9Y6C9 303 aa20.42■□□□□ 0.86
SQSTM1-209ENST00000504627 VCANP13611 3396 aa20.42■□□□□ 0.86
SQSTM1-209ENST00000504627 MBLAC1A4D2B0 266 aaPredicted RBP20.41■□□□□ 0.86
SQSTM1-209ENST00000504627 FAM86B1E9PN63 330 aa20.41■□□□□ 0.86
SQSTM1-209ENST00000504627 BACH1O14867 736 aa20.41■□□□□ 0.86
SQSTM1-209ENST00000504627 UPP2O95045 317 aa20.41■□□□□ 0.86
SQSTM1-209ENST00000504627 CHRNA1P02708 482 aa20.41■□□□□ 0.86
SQSTM1-209ENST00000504627 CYP3A4P08684 503 aa20.41■□□□□ 0.86
SQSTM1-209ENST00000504627 FAM86B2P0C5J1 330 aa20.41■□□□□ 0.86
SQSTM1-209ENST00000504627 GHRP10912 638 aa20.41■□□□□ 0.86
SQSTM1-209ENST00000504627 DDIT3P35638 169 aa20.41■□□□□ 0.86
SQSTM1-209ENST00000504627 NTRK3Q16288 839 aa20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms