RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 GPR55Q9Y2T6 319 aaPredicted RBP5.38□□□□□ -1.55
USP54-217ENST00000498213 TRIM17Q9Y577 477 aa5.38□□□□□ -1.55
USP54-217ENST00000498213 MAP2P11137 1827 aaKnown RBP5.38□□□□□ -1.55
USP54-217ENST00000498213 LAMA3Q16787 3333 aa5.38□□□□□ -1.55
USP54-217ENST00000498213 OR14I1A6ND48 311 aa5.37□□□□□ -1.55
USP54-217ENST00000498213 NRDCO43847 1150 aa5.37□□□□□ -1.55
USP54-217ENST00000498213 ZNF205O95201 554 aa5.37□□□□□ -1.55
USP54-217ENST00000498213 GSTM1P09488 218 aa5.37□□□□□ -1.55
USP54-217ENST00000498213 ARL4AP40617 200 aa5.37□□□□□ -1.55
USP54-217ENST00000498213 SOX9P48436 509 aa5.37□□□□□ -1.55
USP54-217ENST00000498213 NASPP49321 788 aaPredicted RBP5.37□□□□□ -1.55
USP54-217ENST00000498213 GALK1P51570 392 aa5.37□□□□□ -1.55
USP54-217ENST00000498213 MAP3K12Q12852 859 aa5.37□□□□□ -1.55
USP54-217ENST00000498213 ZYXQ15942 572 aaKnown RBP5.37□□□□□ -1.55
USP54-217ENST00000498213 GNPTABQ3T906 1256 aa5.37□□□□□ -1.55
USP54-217ENST00000498213 CCDC93Q567U6 631 aa5.37□□□□□ -1.55
USP54-217ENST00000498213 SOGA3Q5TF21 947 aa5.37□□□□□ -1.55
USP54-217ENST00000498213 GALNT18Q6P9A2 607 aa5.37□□□□□ -1.55
USP54-217ENST00000498213 HDGFL2Q7Z4V5 671 aaPredicted RBP5.37□□□□□ -1.55
USP54-217ENST00000498213 PPFIBP1Q86W92 1011 aa5.37□□□□□ -1.55
USP54-217ENST00000498213 C2orf69Q8N8R5 385 aa5.37□□□□□ -1.55
USP54-217ENST00000498213 RGS22Q8NE09 1264 aa5.37□□□□□ -1.55
USP54-217ENST00000498213 RASGRP4Q8TDF6 673 aa5.37□□□□□ -1.55
USP54-217ENST00000498213 JDP2Q8WYK2 163 aa5.37□□□□□ -1.55
USP54-217ENST00000498213 GBP3Q9H0R5 595 aa5.37□□□□□ -1.55
USP54-217ENST00000498213 R3HDMLQ9H3Y0 253 aa5.37□□□□□ -1.55
USP54-217ENST00000498213 SP110Q9HB58 689 aa5.37□□□□□ -1.55
USP54-217ENST00000498213 GBA2Q9HCG7 927 aaPredicted RBP5.37□□□□□ -1.55
USP54-217ENST00000498213 SF3B6Q9Y3B4 125 aaKnown RBP5.37□□□□□ -1.55
USP54-217ENST00000498213 MAP3K19Q56UN5 1328 aa5.37□□□□□ -1.55
USP54-217ENST00000498213 KDRP35968 1356 aa5.37□□□□□ -1.55
USP54-217ENST00000498213 EDC4Q6P2E9 1401 aaKnown RBP5.37□□□□□ -1.55
USP54-217ENST00000498213 SMG6Q86US8 1419 aaKnown RBP5.37□□□□□ -1.55
USP54-217ENST00000498213 DICER1Q9UPY3 1922 aaKnown RBP5.36□□□□□ -1.55
USP54-217ENST00000498213 ETV2O00321 342 aaPredicted RBP5.36□□□□□ -1.55
USP54-217ENST00000498213 MED14OSP0DP75 135 aa5.36□□□□□ -1.55
USP54-217ENST00000498213 VAV1P15498 845 aa5.36□□□□□ -1.55
USP54-217ENST00000498213 CTSKP43235 329 aa5.36□□□□□ -1.55
USP54-217ENST00000498213 NOP2P46087 812 aaKnown RBP5.36□□□□□ -1.55
USP54-217ENST00000498213 SLC4A8Q2Y0W8 1093 aa5.36□□□□□ -1.55
USP54-217ENST00000498213 AXDND1Q5T1B0 1012 aaPredicted RBP5.36□□□□□ -1.55
USP54-217ENST00000498213 OLFML2BQ68BL8 750 aa5.36□□□□□ -1.55
USP54-217ENST00000498213 NLRX1Q86UT6 975 aa5.36□□□□□ -1.55
USP54-217ENST00000498213 JAMLQ86YT9 394 aa5.36□□□□□ -1.55
USP54-217ENST00000498213 FIBCD1Q8N539 461 aa5.36□□□□□ -1.55
USP54-217ENST00000498213 BRF1Q92994 677 aa5.36□□□□□ -1.55
USP54-217ENST00000498213 BRIP1Q9BX63 1249 aa5.36□□□□□ -1.55
USP54-217ENST00000498213 TGIF2Q9GZN2 237 aa5.36□□□□□ -1.55
USP54-217ENST00000498213 NOL6Q9H6R4 1146 aaKnown RBP5.36□□□□□ -1.55
USP54-217ENST00000498213 PHAXQ9H814 394 aaKnown RBP5.36□□□□□ -1.55
USP54-217ENST00000498213 GP6Q9HCN6 339 aa5.36□□□□□ -1.55
USP54-217ENST00000498213 CRTAC1Q9NQ79 661 aa5.36□□□□□ -1.55
USP54-217ENST00000498213 ADARB2Q9NS39 739 aaKnown RBP5.36□□□□□ -1.55
USP54-217ENST00000498213 AP5S1Q9NUS5 200 aa5.36□□□□□ -1.55
USP54-217ENST00000498213 KIAA1522Q9P206 1035 aaPredicted RBP5.36□□□□□ -1.55
USP54-217ENST00000498213 STAP2Q9UGK3 403 aa5.36□□□□□ -1.55
USP54-217ENST00000498213 ZNF214Q9UL59 606 aaPredicted RBP5.36□□□□□ -1.55
USP54-217ENST00000498213 SMG5Q9UPR3 1016 aaKnown RBP5.36□□□□□ -1.55
USP54-217ENST00000498213 ZNF281Q9Y2X9 895 aa5.36□□□□□ -1.55
USP54-217ENST00000498213 RTL1A6NKG5 1358 aa5.36□□□□□ -1.55
USP54-217ENST00000498213 ROCK2O75116 1388 aaKnown RBP5.36□□□□□ -1.55
USP54-217ENST00000498213 FAM208AQ9UK61 1670 aaKnown RBP5.36□□□□□ -1.55
USP54-217ENST00000498213 SCN11AQ9UI33 1791 aa5.36□□□□□ -1.55
USP54-217ENST00000498213 FER1L6Q2WGJ9 1857 aa5.35□□□□□ -1.55
USP54-217ENST00000498213 A0A1W2PQJ5 194 aa5.35□□□□□ -1.55
USP54-217ENST00000498213 UNCXA6NJT0 531 aa5.35□□□□□ -1.55
USP54-217ENST00000498213 H0Y8X5 98 aa5.35□□□□□ -1.55
USP54-217ENST00000498213 NPHP1O15259 732 aa5.35□□□□□ -1.55
USP54-217ENST00000498213 SHOXO15266 292 aa5.35□□□□□ -1.55
USP54-217ENST00000498213 NUAK1O60285 661 aa5.35□□□□□ -1.55
USP54-217ENST00000498213 CD247P20963 164 aa5.35□□□□□ -1.55
USP54-217ENST00000498213 GLDCP23378 1020 aa5.35□□□□□ -1.55
USP54-217ENST00000498213 GJA8P48165 433 aa5.35□□□□□ -1.55
USP54-217ENST00000498213 CTSWP56202 376 aa5.35□□□□□ -1.55
USP54-217ENST00000498213 SLC7A5Q01650 507 aa5.35□□□□□ -1.55
USP54-217ENST00000498213 HEATR6Q6AI08 1181 aaKnown RBP5.35□□□□□ -1.55
USP54-217ENST00000498213 STYK1Q6J9G0 422 aa5.35□□□□□ -1.55
USP54-217ENST00000498213 OTOP1Q7RTM1 612 aa5.35□□□□□ -1.55
USP54-217ENST00000498213 ADAT2Q7Z6V5 191 aaKnown RBP5.35□□□□□ -1.55
USP54-217ENST00000498213 ZDHHC15Q96MV8 337 aa5.35□□□□□ -1.55
USP54-217ENST00000498213 ACBD3Q9H3P7 528 aa5.35□□□□□ -1.55
USP54-217ENST00000498213 CAPN10Q9HC96 672 aa5.35□□□□□ -1.55
USP54-217ENST00000498213 ERVK13-1Q9NX77 482 aa5.35□□□□□ -1.55
USP54-217ENST00000498213 FHOD1Q9Y613 1164 aa5.35□□□□□ -1.55
USP54-217ENST00000498213 PIEZO1Q92508 2521 aa5.35□□□□□ -1.55
USP54-217ENST00000498213 TRPM7Q96QT4 1865 aa5.34□□□□□ -1.55
USP54-217ENST00000498213 PAPPA2Q9BXP8 1791 aa5.34□□□□□ -1.55
USP54-217ENST00000498213 CACNA1GO43497 2377 aa5.34□□□□□ -1.55
USP54-217ENST00000498213 A0A1W2PQ45 241 aaPredicted RBP5.34□□□□□ -1.55
USP54-217ENST00000498213 A0A1W2PQY0 241 aa5.34□□□□□ -1.55
USP54-217ENST00000498213 PEX10O60683 326 aa5.34□□□□□ -1.55
USP54-217ENST00000498213 SEMA7AO75326 666 aa5.34□□□□□ -1.55
USP54-217ENST00000498213 CD3EP07766 207 aa5.34□□□□□ -1.55
USP54-217ENST00000498213 SRGNP10124 158 aa5.34□□□□□ -1.55
USP54-217ENST00000498213 PNLIPP16233 465 aa5.34□□□□□ -1.55
USP54-217ENST00000498213 GIPRP48546 466 aa5.34□□□□□ -1.55
USP54-217ENST00000498213 ZNF445P59923 1031 aa5.34□□□□□ -1.55
USP54-217ENST00000498213 POU4F1Q01851 419 aa5.34□□□□□ -1.55
USP54-217ENST00000498213 LAPTM5Q13571 262 aa5.34□□□□□ -1.55
USP54-217ENST00000498213 PPP2R5DQ14738 602 aa5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms