RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 NFIBO00712 420 aa6.14□□□□□ -1.43
CSMD3-208ENST00000497026 PRRG2O14669 202 aa6.14□□□□□ -1.43
CSMD3-208ENST00000497026 TMEM253P0C7T8 217 aa6.14□□□□□ -1.43
CSMD3-208ENST00000497026 ACRP10323 421 aa6.14□□□□□ -1.43
CSMD3-208ENST00000497026 NPR1P16066 1061 aa6.14□□□□□ -1.43
CSMD3-208ENST00000497026 PCBP3P57721 371 aaKnown RBP6.14□□□□□ -1.43
CSMD3-208ENST00000497026 RACK1P63244 317 aaKnown RBP6.14□□□□□ -1.43
CSMD3-208ENST00000497026 SLC10A5Q5PT55 438 aa6.14□□□□□ -1.43
CSMD3-208ENST00000497026 C9orf131Q5VYM1 1079 aa6.14□□□□□ -1.43
CSMD3-208ENST00000497026 TDRD10Q5VZ19 366 aaKnown RBP6.14□□□□□ -1.43
CSMD3-208ENST00000497026 RNF111Q6ZNA4 994 aa6.14□□□□□ -1.43
CSMD3-208ENST00000497026 PPP1R42Q7Z4L9 355 aa6.14□□□□□ -1.43
CSMD3-208ENST00000497026 CILP2Q8IUL8 1156 aa6.14□□□□□ -1.43
CSMD3-208ENST00000497026 LILRA2Q8N149 483 aa6.14□□□□□ -1.43
CSMD3-208ENST00000497026 FAM43AQ8N2R8 423 aa6.14□□□□□ -1.43
CSMD3-208ENST00000497026 ZNF655Q8N720 491 aaPredicted RBP6.14□□□□□ -1.43
CSMD3-208ENST00000497026 LINC01599Q8WXQ3 324 aa6.14□□□□□ -1.43
CSMD3-208ENST00000497026 FERD3LQ96RJ6 166 aa6.14□□□□□ -1.43
CSMD3-208ENST00000497026 PPP1R16BQ96T49 567 aa6.14□□□□□ -1.43
CSMD3-208ENST00000497026 UTP14AQ9BVJ6 771 aaKnown RBP6.14□□□□□ -1.43
CSMD3-208ENST00000497026 PPT2Q9UMR5 302 aa6.14□□□□□ -1.43
CSMD3-208ENST00000497026 LTBP1Q14766 1721 aa6.14□□□□□ -1.43
CSMD3-208ENST00000497026 COL4A5P29400 1685 aa6.14□□□□□ -1.43
CSMD3-208ENST00000497026 DUOX1Q9NRD9 1551 aa6.13□□□□□ -1.43
CSMD3-208ENST00000497026 NCANO14594 1321 aa6.13□□□□□ -1.43
CSMD3-208ENST00000497026 SH3TC1Q8TE82 1336 aa6.13□□□□□ -1.43
CSMD3-208ENST00000497026 PI4KAP2A4QPH2 592 aa6.13□□□□□ -1.43
CSMD3-208ENST00000497026 MEIS3P2A8K0S8 358 aa6.13□□□□□ -1.43
CSMD3-208ENST00000497026 NOTOA8MTQ0 251 aa6.13□□□□□ -1.43
CSMD3-208ENST00000497026 C9IYK1 514 aa6.13□□□□□ -1.43
CSMD3-208ENST00000497026 NPIPB6E9PJ23 425 aa6.13□□□□□ -1.43
CSMD3-208ENST00000497026 ETV2O00321 342 aaPredicted RBP6.13□□□□□ -1.43
CSMD3-208ENST00000497026 TNFRSF10CO14798 259 aa6.13□□□□□ -1.43
CSMD3-208ENST00000497026 SIGLEC6O43699 453 aa6.13□□□□□ -1.43
CSMD3-208ENST00000497026 TSPAN15O95858 294 aa6.13□□□□□ -1.43
CSMD3-208ENST00000497026 CFPP27918 469 aa6.13□□□□□ -1.43
CSMD3-208ENST00000497026 RAD51AP2Q09MP3 1159 aa6.13□□□□□ -1.43
CSMD3-208ENST00000497026 LRRFIP1Q32MZ4 808 aaKnown RBP6.13□□□□□ -1.43
CSMD3-208ENST00000497026 BBS9Q3SYG4 887 aa6.13□□□□□ -1.43
CSMD3-208ENST00000497026 KSR2Q6VAB6 950 aa6.13□□□□□ -1.43
CSMD3-208ENST00000497026 ATG14Q6ZNE5 492 aa6.13□□□□□ -1.43
CSMD3-208ENST00000497026 RUFY4Q6ZNE9 571 aa6.13□□□□□ -1.43
CSMD3-208ENST00000497026 SPPL2CQ8IUH8 684 aa6.13□□□□□ -1.43
CSMD3-208ENST00000497026 PI4KAP1Q8N8J0 262 aa6.13□□□□□ -1.43
CSMD3-208ENST00000497026 KCNN1Q92952 543 aa6.13□□□□□ -1.43
CSMD3-208ENST00000497026 RNF34Q969K3 372 aa6.13□□□□□ -1.43
CSMD3-208ENST00000497026 FAM89AQ96GI7 184 aa6.13□□□□□ -1.43
CSMD3-208ENST00000497026 MYD88Q99836 296 aa6.13□□□□□ -1.43
CSMD3-208ENST00000497026 MYH16Q9H6N6 1097 aa6.13□□□□□ -1.43
CSMD3-208ENST00000497026 CHST7Q9NS84 486 aa6.13□□□□□ -1.43
CSMD3-208ENST00000497026 TRMT112Q9UI30 125 aaKnown RBP6.13□□□□□ -1.43
CSMD3-208ENST00000497026 YBX2Q9Y2T7 364 aaKnown RBP6.13□□□□□ -1.43
CSMD3-208ENST00000497026 MAP3K2Q9Y2U5 619 aa6.13□□□□□ -1.43
CSMD3-208ENST00000497026 ZNF281Q9Y2X9 895 aa6.13□□□□□ -1.43
CSMD3-208ENST00000497026 ABCC4O15439 1325 aa6.12□□□□□ -1.43
CSMD3-208ENST00000497026 LTBP3Q9NS15 1303 aa6.12□□□□□ -1.43
CSMD3-208ENST00000497026 IGKV5-2P06315 115 aa6.12□□□□□ -1.43
CSMD3-208ENST00000497026 SDHBP21912 280 aa6.12□□□□□ -1.43
CSMD3-208ENST00000497026 CHRNEQ04844 493 aa6.12□□□□□ -1.43
CSMD3-208ENST00000497026 SLFN5Q08AF3 891 aa6.12□□□□□ -1.43
CSMD3-208ENST00000497026 NR0B2Q15466 257 aa6.12□□□□□ -1.43
CSMD3-208ENST00000497026 SLC14A2Q15849 920 aa6.12□□□□□ -1.43
CSMD3-208ENST00000497026 CCDC81Q6ZN84 652 aa6.12□□□□□ -1.43
CSMD3-208ENST00000497026 CEP128Q6ZU80 1094 aa6.12□□□□□ -1.43
CSMD3-208ENST00000497026 LRRC56Q8IYG6 542 aaPredicted RBP6.12□□□□□ -1.43
CSMD3-208ENST00000497026 TRMT2AQ8IZ69 625 aaKnown RBP6.12□□□□□ -1.43
CSMD3-208ENST00000497026 ANKS4BQ8N8V4 417 aa6.12□□□□□ -1.43
CSMD3-208ENST00000497026 ZNF526Q8TF50 670 aaPredicted RBP6.12□□□□□ -1.43
CSMD3-208ENST00000497026 SHISA4Q96DD7 197 aa6.12□□□□□ -1.43
CSMD3-208ENST00000497026 INTS4Q96HW7 963 aaKnown RBP6.12□□□□□ -1.43
CSMD3-208ENST00000497026 CRAMP1Q96RY5 1269 aa6.12□□□□□ -1.43
CSMD3-208ENST00000497026 STK31Q9BXU1 1019 aa6.12□□□□□ -1.43
CSMD3-208ENST00000497026 RNF181Q9P0P0 153 aa6.12□□□□□ -1.43
CSMD3-208ENST00000497026 ZNRF3Q9ULT6 936 aa6.12□□□□□ -1.43
CSMD3-208ENST00000497026 SPEF2Q9C093 1822 aa6.12□□□□□ -1.43
CSMD3-208ENST00000497026 WDR90Q96KV7 1748 aa6.12□□□□□ -1.43
CSMD3-208ENST00000497026 E9PSI1 815 aa6.11□□□□□ -1.43
CSMD3-208ENST00000497026 DDX58O95786 925 aaKnown RBP6.11□□□□□ -1.43
CSMD3-208ENST00000497026 ALDH1B1P30837 517 aa6.11□□□□□ -1.43
CSMD3-208ENST00000497026 AUHQ13825 339 aaKnown RBP6.11□□□□□ -1.43
CSMD3-208ENST00000497026 KIR3DS1Q14943 382 aa6.11□□□□□ -1.43
CSMD3-208ENST00000497026 SF3B3Q15393 1217 aaKnown RBP6.11□□□□□ -1.43
CSMD3-208ENST00000497026 ZYXQ15942 572 aaKnown RBP6.11□□□□□ -1.43
CSMD3-208ENST00000497026 CCDC93Q567U6 631 aa6.11□□□□□ -1.43
CSMD3-208ENST00000497026 LILRA6Q6PI73 481 aa6.11□□□□□ -1.43
CSMD3-208ENST00000497026 ZBTB38Q8NAP3 1195 aaPredicted RBP6.11□□□□□ -1.43
CSMD3-208ENST00000497026 CCDC191Q8NCU4 936 aa6.11□□□□□ -1.43
CSMD3-208ENST00000497026 BHLHE22Q8NFJ8 381 aaPredicted RBP6.11□□□□□ -1.43
CSMD3-208ENST00000497026 RPGRQ92834 1020 aaKnown RBP6.11□□□□□ -1.43
CSMD3-208ENST00000497026 MAP6Q96JE9 813 aa6.11□□□□□ -1.43
CSMD3-208ENST00000497026 HHIPL1Q96JK4 782 aa6.11□□□□□ -1.43
CSMD3-208ENST00000497026 SGPP1Q9BX95 441 aa6.11□□□□□ -1.43
CSMD3-208ENST00000497026 CHMP4AQ9BY43 222 aa6.11□□□□□ -1.43
CSMD3-208ENST00000497026 SLC6A17Q9H1V8 727 aa6.11□□□□□ -1.43
CSMD3-208ENST00000497026 TAOK3Q9H2K8 898 aa6.11□□□□□ -1.43
CSMD3-208ENST00000497026 PCDHB12Q9Y5F1 795 aa6.11□□□□□ -1.43
CSMD3-208ENST00000497026 A0A1B0GUL6 1792 aa6.11□□□□□ -1.43
CSMD3-208ENST00000497026 MYOCOSA0A1B0GUC4 107 aa6.1□□□□□ -1.43
CSMD3-208ENST00000497026 IRS4O14654 1257 aaPredicted RBP6.1□□□□□ -1.43
CSMD3-208ENST00000497026 RECKO95980 971 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms