RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 NPAS4Q8IUM7 802 aa16.48■□□□□ 0.23
PRPF40A-211ENST00000493468 KLHL23Q8NBE8 558 aa16.48■□□□□ 0.23
PRPF40A-211ENST00000493468 POF1BQ8WVV4 589 aa16.48■□□□□ 0.23
PRPF40A-211ENST00000493468 LINC01599Q8WXQ3 324 aa16.48■□□□□ 0.23
PRPF40A-211ENST00000493468 SUSD6Q92537 303 aa16.48■□□□□ 0.23
PRPF40A-211ENST00000493468 ZFP91Q96JP5 570 aaPredicted RBP16.48■□□□□ 0.23
PRPF40A-211ENST00000493468 FTHL17Q9BXU8 183 aa16.48■□□□□ 0.23
PRPF40A-211ENST00000493468 FAM86C1Q9NVL1 165 aa16.48■□□□□ 0.23
PRPF40A-211ENST00000493468 MAD2L2Q9UI95 211 aa16.48■□□□□ 0.23
PRPF40A-211ENST00000493468 BARX2Q9UMQ3 279 aaPredicted RBP16.48■□□□□ 0.23
PRPF40A-211ENST00000493468 SQORQ9Y6N5 450 aa16.48■□□□□ 0.23
PRPF40A-211ENST00000493468 RIF1Q5UIP0 2472 aaKnown RBP16.48■□□□□ 0.23
PRPF40A-211ENST00000493468 PALM3A6NDB9 673 aaPredicted RBP16.47■□□□□ 0.23
PRPF40A-211ENST00000493468 UBE3AQ05086 875 aa16.47■□□□□ 0.23
PRPF40A-211ENST00000493468 PTPN21Q16825 1174 aa16.47■□□□□ 0.23
PRPF40A-211ENST00000493468 IFIT1BQ5T764 474 aaKnown RBP16.47■□□□□ 0.23
PRPF40A-211ENST00000493468 FCHSD1Q86WN1 690 aa16.47■□□□□ 0.23
PRPF40A-211ENST00000493468 GIMAP8Q8ND71 665 aaPredicted RBP16.47■□□□□ 0.23
PRPF40A-211ENST00000493468 ATOH1Q92858 354 aaPredicted RBP16.47■□□□□ 0.23
PRPF40A-211ENST00000493468 UBAC1Q9BSL1 405 aa16.47■□□□□ 0.23
PRPF40A-211ENST00000493468 KRT23Q9C075 422 aa16.47■□□□□ 0.23
PRPF40A-211ENST00000493468 TUBE1Q9UJT0 475 aa16.47■□□□□ 0.23
PRPF40A-211ENST00000493468 FNDC1Q4ZHG4 1894 aaPredicted RBP16.47■□□□□ 0.23
PRPF40A-211ENST00000493468 STAG3L1P0CL83 205 aa16.46■□□□□ 0.23
PRPF40A-211ENST00000493468 PPFIA1Q13136 1202 aa16.46■□□□□ 0.23
PRPF40A-211ENST00000493468 UTP14CQ5TAP6 766 aaKnown RBP16.46■□□□□ 0.23
PRPF40A-211ENST00000493468 ANKRD45Q5TZF3 282 aa16.46■□□□□ 0.23
PRPF40A-211ENST00000493468 XRRA1Q6P2D8 792 aa16.46■□□□□ 0.23
PRPF40A-211ENST00000493468 FAM43BQ6ZT52 329 aaPredicted RBP16.46■□□□□ 0.23
PRPF40A-211ENST00000493468 ATP8B4Q8TF62 1192 aa16.46■□□□□ 0.23
PRPF40A-211ENST00000493468 CDCA3Q99618 268 aaPredicted RBP16.46■□□□□ 0.23
PRPF40A-211ENST00000493468 RIOX1Q9H6W3 641 aa16.46■□□□□ 0.23
PRPF40A-211ENST00000493468 CNNM2Q9H8M5 875 aa16.46■□□□□ 0.23
PRPF40A-211ENST00000493468 SUPT16HQ9Y5B9 1047 aaKnown RBP16.46■□□□□ 0.23
PRPF40A-211ENST00000493468 CDY2AQ9Y6F7 541 aa16.46■□□□□ 0.23
PRPF40A-211ENST00000493468 DMDP11532 3685 aa16.45■□□□□ 0.22
PRPF40A-211ENST00000493468 MRPS6P82932 125 aaKnown RBP16.45■□□□□ 0.22
PRPF40A-211ENST00000493468 SEC23AQ15436 765 aa16.45■□□□□ 0.22
PRPF40A-211ENST00000493468 GRIK4Q16099 956 aa16.45■□□□□ 0.22
PRPF40A-211ENST00000493468 RPGRIP1Q96KN7 1286 aa16.45■□□□□ 0.22
PRPF40A-211ENST00000493468 TLE6Q9H808 572 aa16.45■□□□□ 0.22
PRPF40A-211ENST00000493468 AGO3Q9H9G7 860 aaKnown RBP16.45■□□□□ 0.22
PRPF40A-211ENST00000493468 TELO2Q9Y4R8 837 aa16.45■□□□□ 0.22
PRPF40A-211ENST00000493468 DCHS1Q96JQ0 3298 aa16.44■□□□□ 0.22
PRPF40A-211ENST00000493468 SDSP20132 328 aa16.44■□□□□ 0.22
PRPF40A-211ENST00000493468 TCF7P36402 384 aaPredicted RBP16.44■□□□□ 0.22
PRPF40A-211ENST00000493468 SLC35G1Q2M3R5 365 aa16.44■□□□□ 0.22
PRPF40A-211ENST00000493468 MARCH8Q5T0T0 291 aa16.44■□□□□ 0.22
PRPF40A-211ENST00000493468 PCNX4Q63HM2 1172 aa16.44■□□□□ 0.22
PRPF40A-211ENST00000493468 RBM23Q86U06 439 aaKnown RBP16.44■□□□□ 0.22
PRPF40A-211ENST00000493468 RTN4RL1Q86UN2 441 aaPredicted RBP16.44■□□□□ 0.22
PRPF40A-211ENST00000493468 HOMER1Q86YM7 354 aa16.44■□□□□ 0.22
PRPF40A-211ENST00000493468 DNAJB3Q8WWF6 145 aa16.44■□□□□ 0.22
PRPF40A-211ENST00000493468 NEK1Q96PY6 1258 aa16.44■□□□□ 0.22
PRPF40A-211ENST00000493468 PIGSQ96S52 555 aa16.44■□□□□ 0.22
PRPF40A-211ENST00000493468 DSCC1Q9BVC3 393 aa16.44■□□□□ 0.22
PRPF40A-211ENST00000493468 ERAP1Q9NZ08 941 aa16.44■□□□□ 0.22
PRPF40A-211ENST00000493468 PNMA6FA0A0J9YX94 578 aa16.43■□□□□ 0.22
PRPF40A-211ENST00000493468 GALR2O43603 387 aaPredicted RBP16.43■□□□□ 0.22
PRPF40A-211ENST00000493468 SCG2P13521 617 aa16.43■□□□□ 0.22
PRPF40A-211ENST00000493468 CD52P31358 61 aa16.43■□□□□ 0.22
PRPF40A-211ENST00000493468 GRM4Q14833 912 aa16.43■□□□□ 0.22
PRPF40A-211ENST00000493468 DUSP6Q16828 381 aa16.43■□□□□ 0.22
PRPF40A-211ENST00000493468 IMMTQ16891 758 aaKnown RBP16.43■□□□□ 0.22
PRPF40A-211ENST00000493468 IER5Q5VY09 327 aa16.43■□□□□ 0.22
PRPF40A-211ENST00000493468 PDE12Q6L8Q7 609 aaKnown RBP16.43■□□□□ 0.22
PRPF40A-211ENST00000493468 TMEM184AQ6ZMB5 413 aa16.43■□□□□ 0.22
PRPF40A-211ENST00000493468 RIPOR3Q96MK2 946 aa16.43■□□□□ 0.22
PRPF40A-211ENST00000493468 VPS13AQ96RL7 3174 aa16.43■□□□□ 0.22
PRPF40A-211ENST00000493468 CACNA1AO00555 2505 aa16.42■□□□□ 0.22
PRPF40A-211ENST00000493468 SRGAP2BP0DMP2 458 aa16.42■□□□□ 0.22
PRPF40A-211ENST00000493468 NBL1P41271 181 aa16.42■□□□□ 0.22
PRPF40A-211ENST00000493468 SP4Q02446 784 aa16.42■□□□□ 0.22
PRPF40A-211ENST00000493468 KCNC3Q14003 757 aa16.42■□□□□ 0.22
PRPF40A-211ENST00000493468 PAN2Q504Q3 1202 aaKnown RBP16.42■□□□□ 0.22
PRPF40A-211ENST00000493468 ERMP1Q7Z2K6 904 aa16.42■□□□□ 0.22
PRPF40A-211ENST00000493468 NLRX1Q86UT6 975 aa16.42■□□□□ 0.22
PRPF40A-211ENST00000493468 VN1R2Q8NFZ6 395 aa16.42■□□□□ 0.22
PRPF40A-211ENST00000493468 RASGRP4Q8TDF6 673 aa16.42■□□□□ 0.22
PRPF40A-211ENST00000493468 GPRASP2Q96D09 838 aa16.42■□□□□ 0.22
PRPF40A-211ENST00000493468 CDHR1Q96JP9 859 aa16.42■□□□□ 0.22
PRPF40A-211ENST00000493468 TLR9Q9NR96 1032 aa16.42■□□□□ 0.22
PRPF40A-211ENST00000493468 RTEL1Q9NZ71 1219 aa16.42■□□□□ 0.22
PRPF40A-211ENST00000493468 PCDHB12Q9Y5F1 795 aa16.42■□□□□ 0.22
PRPF40A-211ENST00000493468 PCDHGC5Q9Y5F6 944 aa16.42■□□□□ 0.22
PRPF40A-211ENST00000493468 TRPV2Q9Y5S1 764 aa16.42■□□□□ 0.22
PRPF40A-211ENST00000493468 IGSF9BQ9UPX0 1349 aa16.42■□□□□ 0.22
PRPF40A-211ENST00000493468 PRR23AA6NEV1 266 aa16.41■□□□□ 0.22
PRPF40A-211ENST00000493468 RRN3P2A6NIE6 340 aa16.41■□□□□ 0.22
PRPF40A-211ENST00000493468 H0Y858 1186 aa16.41■□□□□ 0.22
PRPF40A-211ENST00000493468 CYTH3O43739 400 aa16.41■□□□□ 0.22
PRPF40A-211ENST00000493468 KCNA2P16389 499 aa16.41■□□□□ 0.22
PRPF40A-211ENST00000493468 ASCL5Q7RTU5 278 aa16.41■□□□□ 0.22
PRPF40A-211ENST00000493468 SEPT1Q8WYJ6 367 aa16.41■□□□□ 0.22
PRPF40A-211ENST00000493468 RILPL2Q969X0 211 aa16.41■□□□□ 0.22
PRPF40A-211ENST00000493468 S1PR5Q9H228 398 aa16.41■□□□□ 0.22
PRPF40A-211ENST00000493468 SMARCAD1Q9H4L7 1026 aa16.41■□□□□ 0.22
PRPF40A-211ENST00000493468 AAASQ9NRG9 546 aa16.41■□□□□ 0.22
PRPF40A-211ENST00000493468 RNF216Q9NWF9 866 aaPredicted RBP16.41■□□□□ 0.22
PRPF40A-211ENST00000493468 PADI3Q9ULW8 664 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms