RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 CBX8Q9HC52 389 aa12.83□□□□□ -0.36
C9orf3-220ENST00000489318 VTA1Q9NP79 307 aa12.83□□□□□ -0.36
C9orf3-220ENST00000489318 DACH1Q9UI36 760 aa12.83□□□□□ -0.36
C9orf3-220ENST00000489318 DNM3Q9UQ16 869 aa12.83□□□□□ -0.36
C9orf3-220ENST00000489318 IKBKBO14920 756 aa12.82□□□□□ -0.36
C9orf3-220ENST00000489318 IGHA2P01877 340 aa12.82□□□□□ -0.36
C9orf3-220ENST00000489318 XRCC6P12956 609 aaKnown RBP eCLIP12.82□□□□□ -0.36
C9orf3-220ENST00000489318 QARSP47897 775 aaKnown RBP12.82□□□□□ -0.36
C9orf3-220ENST00000489318 PSMC6P62333 389 aa12.82□□□□□ -0.36
C9orf3-220ENST00000489318 MAP2K5Q13163 448 aa12.82□□□□□ -0.36
C9orf3-220ENST00000489318 CTTNQ14247 550 aaKnown RBP12.82□□□□□ -0.36
C9orf3-220ENST00000489318 KMT5BQ4FZB7 885 aa12.82□□□□□ -0.36
C9orf3-220ENST00000489318 CCDC62Q6P9F0 684 aa12.82□□□□□ -0.36
C9orf3-220ENST00000489318 SEPT14Q6ZU15 432 aa12.82□□□□□ -0.36
C9orf3-220ENST00000489318 DHX40Q8IX18 779 aaKnown RBP12.82□□□□□ -0.36
C9orf3-220ENST00000489318 RNF214Q8ND24 703 aa12.82□□□□□ -0.36
C9orf3-220ENST00000489318 SOCS4Q8WXH5 440 aa12.82□□□□□ -0.36
C9orf3-220ENST00000489318 NACC1Q96RE7 527 aa12.82□□□□□ -0.36
C9orf3-220ENST00000489318 ZSWIM4Q9H7M6 989 aa12.82□□□□□ -0.36
C9orf3-220ENST00000489318 KCND2Q9NZV8 630 aa12.82□□□□□ -0.36
C9orf3-220ENST00000489318 DDX41Q9UJV9 622 aaKnown RBP12.82□□□□□ -0.36
C9orf3-220ENST00000489318 DBR1Q9UK59 544 aaKnown RBP12.82□□□□□ -0.36
C9orf3-220ENST00000489318 PCDHA10Q9Y5I2 948 aa12.82□□□□□ -0.36
C9orf3-220ENST00000489318 IGKV6D-21A0A0A0MT36 114 aa12.81□□□□□ -0.36
C9orf3-220ENST00000489318 ARIH2O95376 493 aa12.81□□□□□ -0.36
C9orf3-220ENST00000489318 ERCC5P28715 1186 aaPredicted RBP12.81□□□□□ -0.36
C9orf3-220ENST00000489318 ACTR2P61160 394 aa12.81□□□□□ -0.36
C9orf3-220ENST00000489318 PSMC5P62195 406 aa12.81□□□□□ -0.36
C9orf3-220ENST00000489318 ASIC1P78348 528 aa12.81□□□□□ -0.36
C9orf3-220ENST00000489318 METTL7BQ6UX53 244 aa12.81□□□□□ -0.36
C9orf3-220ENST00000489318 ABHD15Q6UXT9 468 aa12.81□□□□□ -0.36
C9orf3-220ENST00000489318 PAXIP1Q6ZW49 1069 aaPredicted RBP12.81□□□□□ -0.36
C9orf3-220ENST00000489318 TPH2Q8IWU9 490 aa12.81□□□□□ -0.36
C9orf3-220ENST00000489318 FBXO16Q8IX29 292 aaPredicted RBP12.81□□□□□ -0.36
C9orf3-220ENST00000489318 BANK1Q8NDB2 785 aa12.81□□□□□ -0.36
C9orf3-220ENST00000489318 SCFD2Q8WU76 684 aa12.81□□□□□ -0.36
C9orf3-220ENST00000489318 DDX12PQ92771 950 aa12.81□□□□□ -0.36
C9orf3-220ENST00000489318 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.81□□□□□ -0.36
C9orf3-220ENST00000489318 SLC5A4Q9NY91 659 aa12.81□□□□□ -0.36
C9orf3-220ENST00000489318 MYH11P35749 1972 aa12.81□□□□□ -0.36
C9orf3-220ENST00000489318 PPP1R3GB7ZBB8 358 aa12.8□□□□□ -0.36
C9orf3-220ENST00000489318 DKC1O60832 514 aaKnown RBP eCLIP12.8□□□□□ -0.36
C9orf3-220ENST00000489318 AOC2O75106 756 aa12.8□□□□□ -0.36
C9orf3-220ENST00000489318 PSAPP07602 524 aa12.8□□□□□ -0.36
C9orf3-220ENST00000489318 SUPT20HL2P0C7V6 817 aa12.8□□□□□ -0.36
C9orf3-220ENST00000489318 PPP1R2P41236 205 aa12.8□□□□□ -0.36
C9orf3-220ENST00000489318 NCAPHQ15003 741 aa12.8□□□□□ -0.36
C9orf3-220ENST00000489318 UGCGQ16739 394 aa12.8□□□□□ -0.36
C9orf3-220ENST00000489318 ARSHQ5FYA8 562 aa12.8□□□□□ -0.36
C9orf3-220ENST00000489318 TAPT1Q6NXT6 567 aa12.8□□□□□ -0.36
C9orf3-220ENST00000489318 DPP9Q86TI2 863 aa12.8□□□□□ -0.36
C9orf3-220ENST00000489318 LUZP1Q86V48 1076 aa12.8□□□□□ -0.36
C9orf3-220ENST00000489318 GPBP1Q86WP2 473 aa12.8□□□□□ -0.36
C9orf3-220ENST00000489318 NPLOC4Q8TAT6 608 aa12.8□□□□□ -0.36
C9orf3-220ENST00000489318 ATP6V0A1Q93050 837 aa12.8□□□□□ -0.36
C9orf3-220ENST00000489318 CCDC47Q96A33 483 aaKnown RBP12.8□□□□□ -0.36
C9orf3-220ENST00000489318 APBA2Q99767 749 aa12.8□□□□□ -0.36
C9orf3-220ENST00000489318 TINF2Q9BSI4 451 aa12.8□□□□□ -0.36
C9orf3-220ENST00000489318 BHMT2Q9H2M3 363 aa12.8□□□□□ -0.36
C9orf3-220ENST00000489318 BCAS3Q9H6U6 928 aa12.8□□□□□ -0.36
C9orf3-220ENST00000489318 SAMM50Q9Y512 469 aa12.8□□□□□ -0.36
C9orf3-220ENST00000489318 STBD1O95210 358 aa12.79□□□□□ -0.36
C9orf3-220ENST00000489318 GGPS1O95749 300 aa12.79□□□□□ -0.36
C9orf3-220ENST00000489318 SNAI1O95863 264 aaPredicted RBP12.79□□□□□ -0.36
C9orf3-220ENST00000489318 CD44P16070 742 aaKnown RBP12.79□□□□□ -0.36
C9orf3-220ENST00000489318 CTGFP29279 349 aa12.79□□□□□ -0.36
C9orf3-220ENST00000489318 MAP2K2P36507 400 aa12.79□□□□□ -0.36
C9orf3-220ENST00000489318 PSMD2Q13200 908 aa12.79□□□□□ -0.36
C9orf3-220ENST00000489318 GIT2Q14161 759 aa12.79□□□□□ -0.36
C9orf3-220ENST00000489318 TTLL4Q14679 1199 aa12.79□□□□□ -0.36
C9orf3-220ENST00000489318 CELF3Q5SZQ8 465 aaKnown RBP12.79□□□□□ -0.36
C9orf3-220ENST00000489318 OLFML2BQ68BL8 750 aa12.79□□□□□ -0.36
C9orf3-220ENST00000489318 ISM2Q6H9L7 571 aa12.79□□□□□ -0.36
C9orf3-220ENST00000489318 RINT1Q6NUQ1 792 aa12.79□□□□□ -0.36
C9orf3-220ENST00000489318 MIS18BP1Q6P0N0 1132 aa12.79□□□□□ -0.36
C9orf3-220ENST00000489318 C1orf186Q6ZWK4 172 aa12.79□□□□□ -0.36
C9orf3-220ENST00000489318 CYFIP1Q7L576 1253 aa12.79□□□□□ -0.36
C9orf3-220ENST00000489318 EEPD1Q7L9B9 569 aa12.79□□□□□ -0.36
C9orf3-220ENST00000489318 CCDC60Q8IWA6 550 aaPredicted RBP12.79□□□□□ -0.36
C9orf3-220ENST00000489318 KIAA0895Q8NCT3 520 aa12.79□□□□□ -0.36
C9orf3-220ENST00000489318 AFAP1L1Q8TED9 768 aa12.79□□□□□ -0.36
C9orf3-220ENST00000489318 EMID1Q96A84 441 aaPredicted RBP12.79□□□□□ -0.36
C9orf3-220ENST00000489318 RUSC1Q9BVN2 902 aa12.79□□□□□ -0.36
C9orf3-220ENST00000489318 BMP2KQ9NSY1 1161 aaPredicted RBP12.79□□□□□ -0.36
C9orf3-220ENST00000489318 ANKEF1Q9NU02 776 aa12.79□□□□□ -0.36
C9orf3-220ENST00000489318 EXOC1Q9NV70 894 aa12.79□□□□□ -0.36
C9orf3-220ENST00000489318 GJD2Q9UKL4 321 aa12.79□□□□□ -0.36
C9orf3-220ENST00000489318 TELO2Q9Y4R8 837 aa12.79□□□□□ -0.36
C9orf3-220ENST00000489318 MAFBQ9Y5Q3 323 aaPredicted RBP12.79□□□□□ -0.36
C9orf3-220ENST00000489318 EMSYQ7Z589 1322 aa12.79□□□□□ -0.36
C9orf3-220ENST00000489318 SIP14410 1827 aa12.78□□□□□ -0.36
C9orf3-220ENST00000489318 GSTTP1A0A1W2PQM5 241 aa12.78□□□□□ -0.36
C9orf3-220ENST00000489318 TNPO2O14787 897 aaKnown RBP12.78□□□□□ -0.36
C9orf3-220ENST00000489318 ZNF862O60290 1169 aa12.78□□□□□ -0.36
C9orf3-220ENST00000489318 LGR5O75473 907 aa12.78□□□□□ -0.36
C9orf3-220ENST00000489318 GUCY2CP25092 1073 aa12.78□□□□□ -0.36
C9orf3-220ENST00000489318 YWHABP31946 246 aaKnown RBP12.78□□□□□ -0.36
C9orf3-220ENST00000489318 RGS2P41220 211 aa12.78□□□□□ -0.36
C9orf3-220ENST00000489318 RARRES1P49788 294 aa12.78□□□□□ -0.36
C9orf3-220ENST00000489318 ZNF131P52739 623 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 364.9 ms