RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 ZIC5Q96T25 663 aa13.52□□□□□ -0.25
HDAC6-230ENST00000488543 LRRC27Q9C0I9 530 aa13.52□□□□□ -0.25
HDAC6-230ENST00000488543 ZNF446Q9NWS9 450 aa13.52□□□□□ -0.25
HDAC6-230ENST00000488543 RABGAP1Q9Y3P9 1069 aa13.52□□□□□ -0.25
HDAC6-230ENST00000488543 PGK2P07205 417 aa13.51□□□□□ -0.25
HDAC6-230ENST00000488543 SLC12A3P55017 1021 aa13.51□□□□□ -0.25
HDAC6-230ENST00000488543 PSMC6P62333 389 aa13.51□□□□□ -0.25
HDAC6-230ENST00000488543 PPP2R5CQ13362 524 aa13.51□□□□□ -0.25
HDAC6-230ENST00000488543 NR1I3Q14994 352 aa13.51□□□□□ -0.25
HDAC6-230ENST00000488543 LRCH2Q5VUJ6 765 aa13.51□□□□□ -0.25
HDAC6-230ENST00000488543 B3GNT9Q6UX72 402 aa13.51□□□□□ -0.25
HDAC6-230ENST00000488543 IRF2BP1Q8IU81 584 aa13.51□□□□□ -0.25
HDAC6-230ENST00000488543 CHST13Q8NET6 341 aa13.51□□□□□ -0.25
HDAC6-230ENST00000488543 EIF2AK1Q9BQI3 630 aaKnown RBP13.51□□□□□ -0.25
HDAC6-230ENST00000488543 POLR3CQ9BUI4 534 aaPredicted RBP13.51□□□□□ -0.25
HDAC6-230ENST00000488543 GTPBP4Q9BZE4 634 aaKnown RBP13.51□□□□□ -0.25
HDAC6-230ENST00000488543 EPC1Q9H2F5 836 aa13.51□□□□□ -0.25
HDAC6-230ENST00000488543 EFCC1Q9HA90 598 aa13.51□□□□□ -0.25
HDAC6-230ENST00000488543 DDX41Q9UJV9 622 aaKnown RBP13.51□□□□□ -0.25
HDAC6-230ENST00000488543 ABT1Q9ULW3 272 aaKnown RBP13.51□□□□□ -0.25
HDAC6-230ENST00000488543 STK24Q9Y6E0 443 aa13.51□□□□□ -0.25
HDAC6-230ENST00000488543 TRPM7Q96QT4 1865 aa13.51□□□□□ -0.25
HDAC6-230ENST00000488543 IGF2BP3O00425 579 aaKnown RBP eCLIP13.51□□□□□ -0.25
HDAC6-230ENST00000488543 ERVK-9P63128 1117 aa13.51□□□□□ -0.25
HDAC6-230ENST00000488543 ERVK-24P63145 666 aa13.51□□□□□ -0.25
HDAC6-230ENST00000488543 SETQ01105 290 aaPredicted RBP13.51□□□□□ -0.25
HDAC6-230ENST00000488543 SYCP1Q15431 976 aa13.51□□□□□ -0.25
HDAC6-230ENST00000488543 TKFCQ3LXA3 575 aa13.51□□□□□ -0.25
HDAC6-230ENST00000488543 PCNX4Q63HM2 1172 aa13.51□□□□□ -0.25
HDAC6-230ENST00000488543 NIPA1Q7RTP0 329 aa13.51□□□□□ -0.25
HDAC6-230ENST00000488543 SMC1BQ8NDV3 1235 aa13.51□□□□□ -0.25
HDAC6-230ENST00000488543 DUSP9Q99956 384 aaKnown RBP13.51□□□□□ -0.25
HDAC6-230ENST00000488543 OGFRQ9NZT2 677 aa13.51□□□□□ -0.25
HDAC6-230ENST00000488543 ADD3Q9UEY8 706 aaKnown RBP13.51□□□□□ -0.25
HDAC6-230ENST00000488543 LIMA1Q9UHB6 759 aaKnown RBP13.51□□□□□ -0.25
HDAC6-230ENST00000488543 UBIAD1Q9Y5Z9 338 aa13.51□□□□□ -0.25
HDAC6-230ENST00000488543 PSMA7O14818 248 aa13.5□□□□□ -0.25
HDAC6-230ENST00000488543 NR3C2P08235 984 aa13.5□□□□□ -0.25
HDAC6-230ENST00000488543 BCRP11274 1271 aa13.5□□□□□ -0.25
HDAC6-230ENST00000488543 CYP11B2P19099 503 aa13.5□□□□□ -0.25
HDAC6-230ENST00000488543 TBX2Q13207 712 aaPredicted RBP13.5□□□□□ -0.25
HDAC6-230ENST00000488543 STIM1Q13586 685 aa13.5□□□□□ -0.25
HDAC6-230ENST00000488543 ARSHQ5FYA8 562 aa13.5□□□□□ -0.25
HDAC6-230ENST00000488543 ANKRD23Q86SG2 305 aa13.5□□□□□ -0.25
HDAC6-230ENST00000488543 ZBTB9Q96C00 473 aa13.5□□□□□ -0.25
HDAC6-230ENST00000488543 SLC39A2Q9NP94 309 aa13.5□□□□□ -0.25
HDAC6-230ENST00000488543 KCNH7Q9NS40 1196 aa13.5□□□□□ -0.25
HDAC6-230ENST00000488543 CCNE1P24864 410 aa13.5□□□□□ -0.25
HDAC6-230ENST00000488543 ADKP55263 362 aaKnown RBP13.5□□□□□ -0.25
HDAC6-230ENST00000488543 COASYQ13057 564 aa13.5□□□□□ -0.25
HDAC6-230ENST00000488543 GPBP1Q86WP2 473 aa13.5□□□□□ -0.25
HDAC6-230ENST00000488543 ZNF397Q8NF99 534 aaPredicted RBP13.5□□□□□ -0.25
HDAC6-230ENST00000488543 P2RX5Q93086 422 aa13.5□□□□□ -0.25
HDAC6-230ENST00000488543 ERO1AQ96HE7 468 aa13.5□□□□□ -0.25
HDAC6-230ENST00000488543 HSD17B14Q9BPX1 270 aa13.5□□□□□ -0.25
HDAC6-230ENST00000488543 ZNF577Q9BSK1 485 aa13.5□□□□□ -0.25
HDAC6-230ENST00000488543 UNC45AQ9H3U1 944 aa13.5□□□□□ -0.25
HDAC6-230ENST00000488543 RGL1Q9NZL6 768 aa13.5□□□□□ -0.25
HDAC6-230ENST00000488543 PNMA3Q9UL41 463 aa13.5□□□□□ -0.25
HDAC6-230ENST00000488543 NPHP3-ACAD11A0A0J9YXS1 232 aa13.49□□□□□ -0.25
HDAC6-230ENST00000488543 TESPA1A2RU30 521 aaPredicted RBP13.49□□□□□ -0.25
HDAC6-230ENST00000488543 TEX33O43247 280 aa13.49□□□□□ -0.25
HDAC6-230ENST00000488543 CHMP2AO43633 222 aa13.49□□□□□ -0.25
HDAC6-230ENST00000488543 GAS7O60861 476 aa13.49□□□□□ -0.25
HDAC6-230ENST00000488543 ATP9AO75110 1047 aa13.49□□□□□ -0.25
HDAC6-230ENST00000488543 SSBP05455 408 aaKnown RBP eCLIP13.49□□□□□ -0.25
HDAC6-230ENST00000488543 PBX1P40424 430 aa13.49□□□□□ -0.25
HDAC6-230ENST00000488543 CYP4A11Q02928 519 aa13.49□□□□□ -0.25
HDAC6-230ENST00000488543 KRT31Q15323 416 aa13.49□□□□□ -0.25
HDAC6-230ENST00000488543 VSIG10LQ86VR7 867 aa13.49□□□□□ -0.25
HDAC6-230ENST00000488543 NSUN6Q8TEA1 469 aaKnown RBP13.49□□□□□ -0.25
HDAC6-230ENST00000488543 SEMA6BQ9H3T3 888 aa13.49□□□□□ -0.25
HDAC6-230ENST00000488543 BCAS3Q9H6U6 928 aa13.49□□□□□ -0.25
HDAC6-230ENST00000488543 TLL2Q9Y6L7 1015 aa13.49□□□□□ -0.25
HDAC6-230ENST00000488543 LRRC10BA6NIK2 292 aa13.49□□□□□ -0.25
HDAC6-230ENST00000488543 FAM155AB1AL88 458 aaPredicted RBP13.49□□□□□ -0.25
HDAC6-230ENST00000488543 DDX39AO00148 427 aaKnown RBP13.49□□□□□ -0.25
HDAC6-230ENST00000488543 RGS20O76081 388 aa13.49□□□□□ -0.25
HDAC6-230ENST00000488543 TOMM70O94826 608 aa13.49□□□□□ -0.25
HDAC6-230ENST00000488543 IDEP14735 1019 aa13.49□□□□□ -0.25
HDAC6-230ENST00000488543 PPP1R2P41236 205 aa13.49□□□□□ -0.25
HDAC6-230ENST00000488543 TCP11X2Q5H9J9 407 aa13.49□□□□□ -0.25
HDAC6-230ENST00000488543 ANKRD40Q6AI12 368 aa13.49□□□□□ -0.25
HDAC6-230ENST00000488543 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.49□□□□□ -0.25
HDAC6-230ENST00000488543 SYT2Q8N9I0 419 aaPredicted RBP13.49□□□□□ -0.25
HDAC6-230ENST00000488543 GLIS3Q8NEA6 775 aa13.49□□□□□ -0.25
HDAC6-230ENST00000488543 GPRC5AQ8NFJ5 357 aa13.49□□□□□ -0.25
HDAC6-230ENST00000488543 DESI2Q9BSY9 194 aa13.49□□□□□ -0.25
HDAC6-230ENST00000488543 TUFT1Q9NNX1 390 aa13.49□□□□□ -0.25
HDAC6-230ENST00000488543 JADE2Q9NQC1 790 aa13.49□□□□□ -0.25
HDAC6-230ENST00000488543 FRMD3A2A2Y4 597 aa13.48□□□□□ -0.25
HDAC6-230ENST00000488543 SOWAHBA6NEL2 793 aa13.48□□□□□ -0.25
HDAC6-230ENST00000488543 KCNJ18B7U540 433 aa13.48□□□□□ -0.25
HDAC6-230ENST00000488543 IPO5O00410 1097 aaKnown RBP13.48□□□□□ -0.25
HDAC6-230ENST00000488543 DHX15O43143 795 aaKnown RBP13.48□□□□□ -0.25
HDAC6-230ENST00000488543 PSMD2Q13200 908 aa13.48□□□□□ -0.25
HDAC6-230ENST00000488543 KCNJ12Q14500 433 aa13.48□□□□□ -0.25
HDAC6-230ENST00000488543 DYDC2Q96IM9 177 aa13.48□□□□□ -0.25
HDAC6-230ENST00000488543 RIT2Q99578 217 aa13.48□□□□□ -0.25
HDAC6-230ENST00000488543 THAP9Q9H5L6 903 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms