RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 NR5A1Q13285 461 aa15.78■□□□□ 0.12
SYNE1-226ENST00000488376 PLCB4Q15147 1175 aa15.78■□□□□ 0.12
SYNE1-226ENST00000488376 GPR153Q6NV75 609 aa15.78■□□□□ 0.12
SYNE1-226ENST00000488376 RPUSD2Q8IZ73 545 aaKnown RBP15.78■□□□□ 0.12
SYNE1-226ENST00000488376 FTOQ9C0B1 505 aaKnown RBP eCLIP15.78■□□□□ 0.12
SYNE1-226ENST00000488376 MTMR10Q9NXD2 777 aa15.78■□□□□ 0.12
SYNE1-226ENST00000488376 NRCAMQ92823 1304 aa15.77■□□□□ 0.12
SYNE1-226ENST00000488376 HSFX4A0A1B0GTS1 333 aaPredicted RBP15.77■□□□□ 0.12
SYNE1-226ENST00000488376 HSFX3A0A1B0GWH4 333 aaPredicted RBP15.77■□□□□ 0.12
SYNE1-226ENST00000488376 INSRRP14616 1297 aa15.77■□□□□ 0.12
SYNE1-226ENST00000488376 ATP4AP20648 1035 aa15.77■□□□□ 0.12
SYNE1-226ENST00000488376 DNAJB2P25686 324 aa15.77■□□□□ 0.12
SYNE1-226ENST00000488376 RFC2P35250 354 aa15.77■□□□□ 0.12
SYNE1-226ENST00000488376 STAT5BP51692 787 aa15.77■□□□□ 0.12
SYNE1-226ENST00000488376 RABGGTBP53611 331 aa15.77■□□□□ 0.12
SYNE1-226ENST00000488376 NONOQ15233 471 aaKnown RBP eCLIP15.77■□□□□ 0.12
SYNE1-226ENST00000488376 GALNT17Q6IS24 598 aa15.77■□□□□ 0.12
SYNE1-226ENST00000488376 SWSAP1Q6NVH7 229 aa15.77■□□□□ 0.12
SYNE1-226ENST00000488376 PIK3AP1Q6ZUJ8 805 aa15.77■□□□□ 0.12
SYNE1-226ENST00000488376 KRT25Q7Z3Z0 450 aa15.77■□□□□ 0.12
SYNE1-226ENST00000488376 TMCO2Q7Z6W1 182 aaPredicted RBP15.77■□□□□ 0.12
SYNE1-226ENST00000488376 SLC5A5Q92911 643 aa15.77■□□□□ 0.12
SYNE1-226ENST00000488376 TNFRSF25Q93038 417 aa15.77■□□□□ 0.12
SYNE1-226ENST00000488376 GUCD1Q96NT3 240 aa15.77■□□□□ 0.12
SYNE1-226ENST00000488376 PBX4Q9BYU1 374 aa15.77■□□□□ 0.12
SYNE1-226ENST00000488376 AZI2Q9H6S1 392 aa15.77■□□□□ 0.12
SYNE1-226ENST00000488376 YBX2Q9Y2T7 364 aaKnown RBP15.77■□□□□ 0.12
SYNE1-226ENST00000488376 CYP3A7-CYP3A51PA0A087WV96 503 aa15.76■□□□□ 0.11
SYNE1-226ENST00000488376 MBLAC1A4D2B0 266 aaPredicted RBP15.76■□□□□ 0.11
SYNE1-226ENST00000488376 WNT7AO00755 349 aa15.76■□□□□ 0.11
SYNE1-226ENST00000488376 BACH1O14867 736 aa15.76■□□□□ 0.11
SYNE1-226ENST00000488376 CXCL10P02778 98 aa15.76■□□□□ 0.11
SYNE1-226ENST00000488376 PFKMP08237 780 aa15.76■□□□□ 0.11
SYNE1-226ENST00000488376 MYOGP15173 224 aa15.76■□□□□ 0.11
SYNE1-226ENST00000488376 CYP3A7P24462 503 aa15.76■□□□□ 0.11
SYNE1-226ENST00000488376 LETM2Q2VYF4 491 aa15.76■□□□□ 0.11
SYNE1-226ENST00000488376 Q4G0T1 1027 aa15.76■□□□□ 0.11
SYNE1-226ENST00000488376 PLPPR4Q7Z2D5 763 aa15.76■□□□□ 0.11
SYNE1-226ENST00000488376 FAM177A1Q8N128 213 aaPredicted RBP15.76■□□□□ 0.11
SYNE1-226ENST00000488376 ETNPPLQ8TBG4 499 aa15.76■□□□□ 0.11
SYNE1-226ENST00000488376 MBOAT7Q96N66 472 aa15.76■□□□□ 0.11
SYNE1-226ENST00000488376 UNC45AQ9H3U1 944 aa15.76■□□□□ 0.11
SYNE1-226ENST00000488376 TBC1D22BQ9NU19 505 aa15.76■□□□□ 0.11
SYNE1-226ENST00000488376 TUBE1Q9UJT0 475 aa15.76■□□□□ 0.11
SYNE1-226ENST00000488376 TRPC6Q9Y210 931 aa15.76■□□□□ 0.11
SYNE1-226ENST00000488376 TRIP12Q14669 1992 aaPredicted RBP15.75■□□□□ 0.11
SYNE1-226ENST00000488376 CCDC194A0A1B0GVG4 234 aa15.75■□□□□ 0.11
SYNE1-226ENST00000488376 RSPH10B2B2RC85 870 aa15.75■□□□□ 0.11
SYNE1-226ENST00000488376 ZBTB42B2RXF5 422 aa15.75■□□□□ 0.11
SYNE1-226ENST00000488376 CHMP2AO43633 222 aa15.75■□□□□ 0.11
SYNE1-226ENST00000488376 RSPH10BP0C881 870 aa15.75■□□□□ 0.11
SYNE1-226ENST00000488376 GUCY1B3Q02153 619 aa15.75■□□□□ 0.11
SYNE1-226ENST00000488376 UGCGQ16739 394 aa15.75■□□□□ 0.11
SYNE1-226ENST00000488376 KRT40Q6A162 431 aa15.75■□□□□ 0.11
SYNE1-226ENST00000488376 ZNF746Q6NUN9 644 aaPredicted RBP15.75■□□□□ 0.11
SYNE1-226ENST00000488376 TRMT1LQ7Z2T5 733 aaKnown RBP15.75■□□□□ 0.11
SYNE1-226ENST00000488376 WASF1Q92558 559 aa15.75■□□□□ 0.11
SYNE1-226ENST00000488376 SEMA6BQ9H3T3 888 aa15.75■□□□□ 0.11
SYNE1-226ENST00000488376 ZNF302Q9NR11 478 aa15.75■□□□□ 0.11
SYNE1-226ENST00000488376 SLC4A7Q9Y6M7 1214 aa15.75■□□□□ 0.11
SYNE1-226ENST00000488376 POTEB3A0JP26 581 aa15.74■□□□□ 0.11
SYNE1-226ENST00000488376 BTBD18B2RXH4 712 aa15.74■□□□□ 0.11
SYNE1-226ENST00000488376 GAS7O60861 476 aa15.74■□□□□ 0.11
SYNE1-226ENST00000488376 PSMD10O75832 226 aa15.74■□□□□ 0.11
SYNE1-226ENST00000488376 CHRNA1P02708 482 aa15.74■□□□□ 0.11
SYNE1-226ENST00000488376 MMP1P03956 469 aa15.74■□□□□ 0.11
SYNE1-226ENST00000488376 GNAT1P11488 350 aa15.74■□□□□ 0.11
SYNE1-226ENST00000488376 ATP2A2P16615 1042 aaKnown RBP15.74■□□□□ 0.11
SYNE1-226ENST00000488376 XBP1P17861 261 aa15.74■□□□□ 0.11
SYNE1-226ENST00000488376 KRT2P35908 639 aa15.74■□□□□ 0.11
SYNE1-226ENST00000488376 DEFB103AP81534 67 aa15.74■□□□□ 0.11
SYNE1-226ENST00000488376 KRT76Q01546 638 aa15.74■□□□□ 0.11
SYNE1-226ENST00000488376 ZNF697Q5TEC3 545 aa15.74■□□□□ 0.11
SYNE1-226ENST00000488376 LRCH2Q5VUJ6 765 aa15.74■□□□□ 0.11
SYNE1-226ENST00000488376 MIS18BP1Q6P0N0 1132 aa15.74■□□□□ 0.11
SYNE1-226ENST00000488376 PDXDC2PQ6P474 469 aa15.74■□□□□ 0.11
SYNE1-226ENST00000488376 POTEBQ6S5H4 581 aa15.74■□□□□ 0.11
SYNE1-226ENST00000488376 DNAJB3Q8WWF6 145 aa15.74■□□□□ 0.11
SYNE1-226ENST00000488376 TBC1D32Q96NH3 1257 aa15.74■□□□□ 0.11
SYNE1-226ENST00000488376 NKX2-4Q9H2Z4 354 aa15.74■□□□□ 0.11
SYNE1-226ENST00000488376 GABBR1Q9UBS5 961 aa15.74■□□□□ 0.11
SYNE1-226ENST00000488376 DDX25Q9UHL0 483 aaKnown RBP15.74■□□□□ 0.11
SYNE1-226ENST00000488376 TET1Q8NFU7 2136 aa15.74■□□□□ 0.11
SYNE1-226ENST00000488376 ZNF862O60290 1169 aa15.73■□□□□ 0.11
SYNE1-226ENST00000488376 ARHGEF15O94989 841 aa15.73■□□□□ 0.11
SYNE1-226ENST00000488376 WDR5P61964 334 aaKnown RBP15.73■□□□□ 0.11
SYNE1-226ENST00000488376 MGAT3Q09327 533 aa15.73■□□□□ 0.11
SYNE1-226ENST00000488376 RABEP1Q15276 862 aa15.73■□□□□ 0.11
SYNE1-226ENST00000488376 FAM160B1Q5W0V3 765 aa15.73■□□□□ 0.11
SYNE1-226ENST00000488376 CNKSR3Q6P9H4 555 aa15.73■□□□□ 0.11
SYNE1-226ENST00000488376 B3GNT9Q6UX72 402 aa15.73■□□□□ 0.11
SYNE1-226ENST00000488376 NEK8Q86SG6 692 aa15.73■□□□□ 0.11
SYNE1-226ENST00000488376 DIS3L2Q8IYB7 885 aaKnown RBP15.73■□□□□ 0.11
SYNE1-226ENST00000488376 DBF4BQ8NFT6 615 aa15.73■□□□□ 0.11
SYNE1-226ENST00000488376 ATP8B4Q8TF62 1192 aa15.73■□□□□ 0.11
SYNE1-226ENST00000488376 TIFAQ96CG3 184 aa15.73■□□□□ 0.11
SYNE1-226ENST00000488376 RIT2Q99578 217 aa15.73■□□□□ 0.11
SYNE1-226ENST00000488376 FAM49AQ9H0Q0 323 aaPredicted RBP15.73■□□□□ 0.11
SYNE1-226ENST00000488376 MTIF3Q9H2K0 278 aaKnown RBP15.73■□□□□ 0.11
SYNE1-226ENST00000488376 DISC1Q9NRI5 854 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms