RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 MEIS2O14770 477 aa17.73■□□□□ 0.43
MCF2L-228ENST00000487354 KCNA2P16389 499 aa17.73■□□□□ 0.43
MCF2L-228ENST00000487354 TCF7P36402 384 aaPredicted RBP17.73■□□□□ 0.43
MCF2L-228ENST00000487354 BTG3Q14201 252 aaPredicted RBP17.73■□□□□ 0.43
MCF2L-228ENST00000487354 PCNX4Q63HM2 1172 aa17.73■□□□□ 0.43
MCF2L-228ENST00000487354 B4GALNT3Q6L9W6 998 aa17.73■□□□□ 0.43
MCF2L-228ENST00000487354 TAF2Q6P1X5 1199 aa17.73■□□□□ 0.43
MCF2L-228ENST00000487354 USP17L6PQ6QN14 398 aa17.73■□□□□ 0.43
MCF2L-228ENST00000487354 TSHZ1Q6ZSZ6 1077 aa17.73■□□□□ 0.43
MCF2L-228ENST00000487354 SPPL3Q8TCT6 385 aa17.73■□□□□ 0.43
MCF2L-228ENST00000487354 P2RX5Q93086 422 aa17.73■□□□□ 0.43
MCF2L-228ENST00000487354 PCDHGC5Q9Y5F6 944 aa17.73■□□□□ 0.43
MCF2L-228ENST00000487354 CDY2AQ9Y6F7 541 aa17.73■□□□□ 0.43
MCF2L-228ENST00000487354 NUCB1Q02818 461 aa17.72■□□□□ 0.43
MCF2L-228ENST00000487354 TCF15Q12870 199 aa17.72■□□□□ 0.43
MCF2L-228ENST00000487354 COASYQ13057 564 aa17.72■□□□□ 0.43
MCF2L-228ENST00000487354 PPFIA1Q13136 1202 aa17.72■□□□□ 0.43
MCF2L-228ENST00000487354 CBX2Q14781 532 aaPredicted RBP17.72■□□□□ 0.43
MCF2L-228ENST00000487354 GRIK4Q16099 956 aa17.72■□□□□ 0.43
MCF2L-228ENST00000487354 CHD1LQ86WJ1 897 aa17.72■□□□□ 0.43
MCF2L-228ENST00000487354 EFHBQ8N7U6 833 aa17.72■□□□□ 0.43
MCF2L-228ENST00000487354 DNAJB3Q8WWF6 145 aa17.72■□□□□ 0.43
MCF2L-228ENST00000487354 TUBE1Q9UJT0 475 aa17.72■□□□□ 0.43
MCF2L-228ENST00000487354 TMEM221A6NGB7 291 aa17.71■□□□□ 0.43
MCF2L-228ENST00000487354 M0R296 226 aa17.71■□□□□ 0.43
MCF2L-228ENST00000487354 PIK3CDO00329 1044 aa17.71■□□□□ 0.43
MCF2L-228ENST00000487354 CD52P31358 61 aa17.71■□□□□ 0.43
MCF2L-228ENST00000487354 TRIM67Q6ZTA4 783 aa17.71■□□□□ 0.43
MCF2L-228ENST00000487354 CMTR2Q8IYT2 770 aaKnown RBP17.71■□□□□ 0.43
MCF2L-228ENST00000487354 SNX27Q96L92 541 aa17.71■□□□□ 0.43
MCF2L-228ENST00000487354 HIP1O00291 1037 aa17.7■□□□□ 0.42
MCF2L-228ENST00000487354 IGHDP01880 384 aa17.7■□□□□ 0.42
MCF2L-228ENST00000487354 CYP21A2P08686 494 aa17.7■□□□□ 0.42
MCF2L-228ENST00000487354 ITGB5P18084 799 aa17.7■□□□□ 0.42
MCF2L-228ENST00000487354 MARK3P27448 753 aa17.7■□□□□ 0.42
MCF2L-228ENST00000487354 NDUFV1P49821 464 aa17.7■□□□□ 0.42
MCF2L-228ENST00000487354 GATMP50440 423 aa17.7■□□□□ 0.42
MCF2L-228ENST00000487354 ANTXR2P58335 489 aa17.7■□□□□ 0.42
MCF2L-228ENST00000487354 MRPS6P82932 125 aaKnown RBP17.7■□□□□ 0.42
MCF2L-228ENST00000487354 TRAF1Q13077 416 aa17.7■□□□□ 0.42
MCF2L-228ENST00000487354 KLHL23Q8NBE8 558 aa17.7■□□□□ 0.42
MCF2L-228ENST00000487354 VN1R2Q8NFZ6 395 aa17.7■□□□□ 0.42
MCF2L-228ENST00000487354 PIBF1Q8WXW3 757 aa17.7■□□□□ 0.42
MCF2L-228ENST00000487354 PCYT2Q99447 389 aa17.7■□□□□ 0.42
MCF2L-228ENST00000487354 BARX2Q9UMQ3 279 aaPredicted RBP17.7■□□□□ 0.42
MCF2L-228ENST00000487354 DMDP11532 3685 aa17.69■□□□□ 0.42
MCF2L-228ENST00000487354 ZXDAP98168 799 aa17.69■□□□□ 0.42
MCF2L-228ENST00000487354 RBM10P98175 930 aaKnown RBP17.69■□□□□ 0.42
MCF2L-228ENST00000487354 XRRA1Q6P2D8 792 aa17.69■□□□□ 0.42
MCF2L-228ENST00000487354 GPRASP2Q96D09 838 aa17.69■□□□□ 0.42
MCF2L-228ENST00000487354 TMX1Q9H3N1 280 aa17.69■□□□□ 0.42
MCF2L-228ENST00000487354 USP15Q9Y4E8 981 aaPredicted RBP17.69■□□□□ 0.42
MCF2L-228ENST00000487354 IFIT3O14879 490 aaKnown RBP17.68■□□□□ 0.42
MCF2L-228ENST00000487354 NRIP1P48552 1158 aa17.68■□□□□ 0.42
MCF2L-228ENST00000487354 PTH1RQ03431 593 aa17.68■□□□□ 0.42
MCF2L-228ENST00000487354 PAN2Q504Q3 1202 aaKnown RBP17.68■□□□□ 0.42
MCF2L-228ENST00000487354 NAALADL2Q58DX5 795 aa17.68■□□□□ 0.42
MCF2L-228ENST00000487354 NPAS4Q8IUM7 802 aa17.68■□□□□ 0.42
MCF2L-228ENST00000487354 POF1BQ8WVV4 589 aa17.68■□□□□ 0.42
MCF2L-228ENST00000487354 EVPLQ92817 2033 aa17.68■□□□□ 0.42
MCF2L-228ENST00000487354 SPZ1Q9BXG8 430 aa17.68■□□□□ 0.42
MCF2L-228ENST00000487354 ERAP1Q9NZ08 941 aa17.68■□□□□ 0.42
MCF2L-228ENST00000487354 PTPN5P54829 565 aa17.67■□□□□ 0.42
MCF2L-228ENST00000487354 RSPH3Q86UC2 560 aa17.67■□□□□ 0.42
MCF2L-228ENST00000487354 SMARCC2Q8TAQ2 1214 aa17.67■□□□□ 0.42
MCF2L-228ENST00000487354 IGDCC4Q8TDY8 1250 aa17.67■□□□□ 0.42
MCF2L-228ENST00000487354 SEPT1Q8WYJ6 367 aa17.67■□□□□ 0.42
MCF2L-228ENST00000487354 SUSD6Q92537 303 aa17.67■□□□□ 0.42
MCF2L-228ENST00000487354 PBXIP1Q96AQ6 731 aa17.67■□□□□ 0.42
MCF2L-228ENST00000487354 ASIC4Q96FT7 647 aa17.67■□□□□ 0.42
MCF2L-228ENST00000487354 FAM49AQ9H0Q0 323 aaPredicted RBP17.67■□□□□ 0.42
MCF2L-228ENST00000487354 PADI3Q9ULW8 664 aa17.67■□□□□ 0.42
MCF2L-228ENST00000487354 UBIAD1Q9Y5Z9 338 aa17.67■□□□□ 0.42
MCF2L-228ENST00000487354 SQORQ9Y6N5 450 aa17.67■□□□□ 0.42
MCF2L-228ENST00000487354 IGSF9BQ9UPX0 1349 aa17.67■□□□□ 0.42
MCF2L-228ENST00000487354 INSRRP14616 1297 aa17.66■□□□□ 0.42
MCF2L-228ENST00000487354 GSPT1P15170 499 aaKnown RBP17.66■□□□□ 0.42
MCF2L-228ENST00000487354 VCPP55072 806 aaKnown RBP17.66■□□□□ 0.42
MCF2L-228ENST00000487354 IGBP1P78318 339 aa17.66■□□□□ 0.42
MCF2L-228ENST00000487354 TMEM62Q0P6H9 643 aa17.66■□□□□ 0.42
MCF2L-228ENST00000487354 COL9A3Q14050 684 aaPredicted RBP17.66■□□□□ 0.42
MCF2L-228ENST00000487354 WTAPQ15007 396 aa17.66■□□□□ 0.42
MCF2L-228ENST00000487354 RBM23Q86U06 439 aaKnown RBP17.66■□□□□ 0.42
MCF2L-228ENST00000487354 NLRX1Q86UT6 975 aa17.66■□□□□ 0.42
MCF2L-228ENST00000487354 MB21D2Q8IYB1 491 aaPredicted RBP17.66■□□□□ 0.42
MCF2L-228ENST00000487354 FBXL6Q8N531 539 aa17.66■□□□□ 0.42
MCF2L-228ENST00000487354 GIMAP8Q8ND71 665 aaPredicted RBP17.66■□□□□ 0.42
MCF2L-228ENST00000487354 ATP8B4Q8TF62 1192 aa17.66■□□□□ 0.42
MCF2L-228ENST00000487354 TRAPPC12Q8WVT3 735 aa17.66■□□□□ 0.42
MCF2L-228ENST00000487354 MYL10Q9BUA6 226 aa17.66■□□□□ 0.42
MCF2L-228ENST00000487354 PKD2L1Q9P0L9 805 aa17.66■□□□□ 0.42
MCF2L-228ENST00000487354 HCSTQ9UBK5 93 aa17.66■□□□□ 0.42
MCF2L-228ENST00000487354 TRPV2Q9Y5S1 764 aa17.66■□□□□ 0.42
MCF2L-228ENST00000487354 WDR81Q562E7 1941 aa17.66■□□□□ 0.42
MCF2L-228ENST00000487354 E7EWF7 191 aa17.65■□□□□ 0.42
MCF2L-228ENST00000487354 MGEA5O60502 916 aa17.65■□□□□ 0.42
MCF2L-228ENST00000487354 FTHL17Q9BXU8 183 aa17.65■□□□□ 0.42
MCF2L-228ENST00000487354 SMARCAD1Q9H4L7 1026 aa17.65■□□□□ 0.42
MCF2L-228ENST00000487354 ZFHX2Q9C0A1 2572 aaPredicted RBP17.65■□□□□ 0.42
MCF2L-228ENST00000487354 VPS13AQ96RL7 3174 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms