RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 LCHNA4D1U4 455 aa13.84□□□□□ -0.19
SQSTM1-207ENST00000481335 LINC01553A4QN01 128 aa13.84□□□□□ -0.19
SQSTM1-207ENST00000481335 EPOPA6NHQ4 379 aa13.84□□□□□ -0.19
SQSTM1-207ENST00000481335 MEIS1O00470 390 aa13.84□□□□□ -0.19
SQSTM1-207ENST00000481335 ARHGEF15O94989 841 aa13.84□□□□□ -0.19
SQSTM1-207ENST00000481335 CTSHP09668 335 aa13.84□□□□□ -0.19
SQSTM1-207ENST00000481335 SCG2P13521 617 aa13.84□□□□□ -0.19
SQSTM1-207ENST00000481335 GNA11P29992 359 aa13.84□□□□□ -0.19
SQSTM1-207ENST00000481335 SETQ01105 290 aaPredicted RBP13.84□□□□□ -0.19
SQSTM1-207ENST00000481335 GRB10Q13322 594 aa13.84□□□□□ -0.19
SQSTM1-207ENST00000481335 CCDC85BQ15834 202 aaPredicted RBP13.84□□□□□ -0.19
SQSTM1-207ENST00000481335 Q6ZUG5 572 aa13.84□□□□□ -0.19
SQSTM1-207ENST00000481335 SKAP1Q86WV1 359 aa13.84□□□□□ -0.19
SQSTM1-207ENST00000481335 MYOCDQ8IZQ8 938 aa13.84□□□□□ -0.19
SQSTM1-207ENST00000481335 TOP1MTQ969P6 601 aa13.84□□□□□ -0.19
SQSTM1-207ENST00000481335 JAKMIP1Q96N16 626 aaKnown RBP13.84□□□□□ -0.19
SQSTM1-207ENST00000481335 SNX14Q9Y5W7 946 aa13.84□□□□□ -0.19
SQSTM1-207ENST00000481335 PRPF3O43395 683 aaKnown RBP13.83□□□□□ -0.2
SQSTM1-207ENST00000481335 LPXNO60711 386 aa13.83□□□□□ -0.2
SQSTM1-207ENST00000481335 ATG7O95352 703 aa13.83□□□□□ -0.2
SQSTM1-207ENST00000481335 CYP3A4P08684 503 aa13.83□□□□□ -0.2
SQSTM1-207ENST00000481335 RPS6KB1P23443 525 aa13.83□□□□□ -0.2
SQSTM1-207ENST00000481335 EVCP57679 992 aa13.83□□□□□ -0.2
SQSTM1-207ENST00000481335 MGAT3Q09327 533 aa13.83□□□□□ -0.2
SQSTM1-207ENST00000481335 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.83□□□□□ -0.2
SQSTM1-207ENST00000481335 CCDC148Q8NFR7 591 aa13.83□□□□□ -0.2
SQSTM1-207ENST00000481335 BICD2Q8TD16 824 aa13.83□□□□□ -0.2
SQSTM1-207ENST00000481335 CRYGNQ8WXF5 182 aa13.83□□□□□ -0.2
SQSTM1-207ENST00000481335 BRF1Q92994 677 aa13.83□□□□□ -0.2
SQSTM1-207ENST00000481335 RNF26Q9BY78 433 aaPredicted RBP13.83□□□□□ -0.2
SQSTM1-207ENST00000481335 CERS4Q9HA82 394 aa13.83□□□□□ -0.2
SQSTM1-207ENST00000481335 AGO4Q9HCK5 861 aaKnown RBP13.83□□□□□ -0.2
SQSTM1-207ENST00000481335 C6orf50Q9HD87 102 aa13.83□□□□□ -0.2
SQSTM1-207ENST00000481335 PRDM6Q9NQX0 595 aa13.83□□□□□ -0.2
SQSTM1-207ENST00000481335 TELO2Q9Y4R8 837 aa13.83□□□□□ -0.2
SQSTM1-207ENST00000481335 BDP1A6H8Y1 2624 aa13.83□□□□□ -0.2
SQSTM1-207ENST00000481335 TNFRSF10AO00220 468 aa13.82□□□□□ -0.2
SQSTM1-207ENST00000481335 CHRNA1P02708 482 aa13.82□□□□□ -0.2
SQSTM1-207ENST00000481335 ADD1P35611 737 aaKnown RBP13.82□□□□□ -0.2
SQSTM1-207ENST00000481335 STAT5BP51692 787 aa13.82□□□□□ -0.2
SQSTM1-207ENST00000481335 ACTR2P61160 394 aa13.82□□□□□ -0.2
SQSTM1-207ENST00000481335 AKAP17AQ02040 695 aaKnown RBP13.82□□□□□ -0.2
SQSTM1-207ENST00000481335 APOBRQ0VD83 1088 aa13.82□□□□□ -0.2
SQSTM1-207ENST00000481335 MARCH8Q5T0T0 291 aa13.82□□□□□ -0.2
SQSTM1-207ENST00000481335 IER5Q5VY09 327 aa13.82□□□□□ -0.2
SQSTM1-207ENST00000481335 FAM177A1Q8N128 213 aaPredicted RBP13.82□□□□□ -0.2
SQSTM1-207ENST00000481335 REXO1Q8N1G1 1221 aaKnown RBP13.82□□□□□ -0.2
SQSTM1-207ENST00000481335 MICALL1Q8N3F8 863 aa13.82□□□□□ -0.2
SQSTM1-207ENST00000481335 YME1L1Q96TA2 773 aa13.82□□□□□ -0.2
SQSTM1-207ENST00000481335 PCYT2Q99447 389 aa13.82□□□□□ -0.2
SQSTM1-207ENST00000481335 NAP1L2Q9ULW6 460 aaPredicted RBP13.82□□□□□ -0.2
SQSTM1-207ENST00000481335 COL1A2P08123 1366 aa13.82□□□□□ -0.2
SQSTM1-207ENST00000481335 IGKV6D-21A0A0A0MT36 114 aa13.81□□□□□ -0.2
SQSTM1-207ENST00000481335 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.81□□□□□ -0.2
SQSTM1-207ENST00000481335 M0QZ92 97 aa13.81□□□□□ -0.2
SQSTM1-207ENST00000481335 RFXAPO00287 272 aa13.81□□□□□ -0.2
SQSTM1-207ENST00000481335 IFNAR1P17181 557 aa13.81□□□□□ -0.2
SQSTM1-207ENST00000481335 MARK3P27448 753 aa13.81□□□□□ -0.2
SQSTM1-207ENST00000481335 ZNF76P36508 570 aa13.81□□□□□ -0.2
SQSTM1-207ENST00000481335 ITGB3BPQ13352 177 aaPredicted RBP13.81□□□□□ -0.2
SQSTM1-207ENST00000481335 SKIV2LQ15477 1246 aaKnown RBP13.81□□□□□ -0.2
SQSTM1-207ENST00000481335 FAM160B1Q5W0V3 765 aa13.81□□□□□ -0.2
SQSTM1-207ENST00000481335 TSHZ1Q6ZSZ6 1077 aa13.81□□□□□ -0.2
SQSTM1-207ENST00000481335 TMCO2Q7Z6W1 182 aaPredicted RBP13.81□□□□□ -0.2
SQSTM1-207ENST00000481335 NME8Q8N427 588 aa13.81□□□□□ -0.2
SQSTM1-207ENST00000481335 CYP2W1Q8TAV3 490 aa13.81□□□□□ -0.2
SQSTM1-207ENST00000481335 ADAMTS19Q8TE59 1207 aa13.81□□□□□ -0.2
SQSTM1-207ENST00000481335 FTHL17Q9BXU8 183 aa13.81□□□□□ -0.2
SQSTM1-207ENST00000481335 SUGCTQ9HAC7 445 aa13.81□□□□□ -0.2
SQSTM1-207ENST00000481335 TBC1D22BQ9NU19 505 aa13.81□□□□□ -0.2
SQSTM1-207ENST00000481335 PKD2L1Q9P0L9 805 aa13.81□□□□□ -0.2
SQSTM1-207ENST00000481335 TRPC6Q9Y210 931 aa13.81□□□□□ -0.2
SQSTM1-207ENST00000481335 RWDD3Q9Y3V2 267 aa13.81□□□□□ -0.2
SQSTM1-207ENST00000481335 PCDHA2Q9Y5H9 948 aa13.81□□□□□ -0.2
SQSTM1-207ENST00000481335 KDM3AQ9Y4C1 1321 aa13.81□□□□□ -0.2
SQSTM1-207ENST00000481335 EVPLQ92817 2033 aa13.81□□□□□ -0.2
SQSTM1-207ENST00000481335 HBP1O60381 514 aa13.8□□□□□ -0.2
SQSTM1-207ENST00000481335 ARP10275 920 aa13.8□□□□□ -0.2
SQSTM1-207ENST00000481335 INSRRP14616 1297 aa13.8□□□□□ -0.2
SQSTM1-207ENST00000481335 MRPS6P82932 125 aaKnown RBP13.8□□□□□ -0.2
SQSTM1-207ENST00000481335 PLCB4Q15147 1175 aa13.8□□□□□ -0.2
SQSTM1-207ENST00000481335 PKN1Q16512 942 aa13.8□□□□□ -0.2
SQSTM1-207ENST00000481335 PTPROQ16827 1216 aa13.8□□□□□ -0.2
SQSTM1-207ENST00000481335 FBXO47Q5MNV8 452 aa13.8□□□□□ -0.2
SQSTM1-207ENST00000481335 RUFY4Q6ZNE9 571 aa13.8□□□□□ -0.2
SQSTM1-207ENST00000481335 PLA2G4DQ86XP0 818 aa13.8□□□□□ -0.2
SQSTM1-207ENST00000481335 SMAP1Q8IYB5 467 aaPredicted RBP13.8□□□□□ -0.2
SQSTM1-207ENST00000481335 FBXO22Q8NEZ5 403 aa13.8□□□□□ -0.2
SQSTM1-207ENST00000481335 GDPD5Q8WTR4 605 aa13.8□□□□□ -0.2
SQSTM1-207ENST00000481335 HLA-CQ95604 372 aa13.8□□□□□ -0.2
SQSTM1-207ENST00000481335 PGBD1Q96JS3 809 aa13.8□□□□□ -0.2
SQSTM1-207ENST00000481335 TM6SF1Q9BZW5 370 aa13.8□□□□□ -0.2
SQSTM1-207ENST00000481335 SH3GLB2Q9NR46 395 aa13.8□□□□□ -0.2
SQSTM1-207ENST00000481335 TCEAL9Q9UHQ7 104 aa13.8□□□□□ -0.2
SQSTM1-207ENST00000481335 CDY2AQ9Y6F7 541 aa13.8□□□□□ -0.2
SQSTM1-207ENST00000481335 TCF20Q9UGU0 1960 aaKnown RBP13.8□□□□□ -0.2
SQSTM1-207ENST00000481335 IGLV3-22A0A075B6J6 115 aa13.79□□□□□ -0.2
SQSTM1-207ENST00000481335 SMIM35A0A1B0GVV1 85 aa13.79□□□□□ -0.2
SQSTM1-207ENST00000481335 POTEB3A0JP26 581 aa13.79□□□□□ -0.2
SQSTM1-207ENST00000481335 FAM86B1E9PN63 330 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms