RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 HOOK3Q86VS8 718 aa20.47■□□□□ 0.87
CCDC88B-207ENST00000479965 RNF217Q8TC41 542 aa20.47■□□□□ 0.87
CCDC88B-207ENST00000479965 ACTRT1Q8TDG2 376 aa20.47■□□□□ 0.87
CCDC88B-207ENST00000479965 DDX12PQ92771 950 aa20.47■□□□□ 0.87
CCDC88B-207ENST00000479965 STX8Q9UNK0 236 aa20.47■□□□□ 0.87
CCDC88B-207ENST00000479965 SLC12A4Q9UP95 1085 aa20.47■□□□□ 0.87
CCDC88B-207ENST00000479965 SPDYE3A6NKU9 549 aa20.47■□□□□ 0.87
CCDC88B-207ENST00000479965 RGS16O15492 202 aaPredicted RBP20.47■□□□□ 0.87
CCDC88B-207ENST00000479965 PRPHP41219 470 aa20.47■□□□□ 0.87
CCDC88B-207ENST00000479965 DYDC1Q8WWB3 177 aa20.47■□□□□ 0.87
CCDC88B-207ENST00000479965 ZBTB10Q96DT7 871 aa20.47■□□□□ 0.87
CCDC88B-207ENST00000479965 SAAL1Q96ER3 474 aa20.47■□□□□ 0.87
CCDC88B-207ENST00000479965 ZNF570Q96NI8 536 aa20.47■□□□□ 0.87
CCDC88B-207ENST00000479965 ZNF317Q96PQ6 595 aaPredicted RBP20.47■□□□□ 0.87
CCDC88B-207ENST00000479965 BRIP1Q9BX63 1249 aa20.47■□□□□ 0.87
CCDC88B-207ENST00000479965 EDEM3Q9BZQ6 932 aa20.47■□□□□ 0.87
CCDC88B-207ENST00000479965 BATF3Q9NR55 127 aa20.47■□□□□ 0.87
CCDC88B-207ENST00000479965 ALDH5A1P51649 535 aaPredicted RBP20.47■□□□□ 0.87
CCDC88B-207ENST00000479965 PLTPP55058 493 aa20.47■□□□□ 0.87
CCDC88B-207ENST00000479965 FKBP3Q00688 224 aaKnown RBP20.47■□□□□ 0.87
CCDC88B-207ENST00000479965 CHRNDQ07001 517 aa20.47■□□□□ 0.87
CCDC88B-207ENST00000479965 CCDC38Q502W7 563 aa20.47■□□□□ 0.87
CCDC88B-207ENST00000479965 DZIP3Q86Y13 1208 aaKnown RBP20.47■□□□□ 0.87
CCDC88B-207ENST00000479965 EGFL6Q8IUX8 553 aa20.47■□□□□ 0.87
CCDC88B-207ENST00000479965 ZBTB1Q9Y2K1 713 aa20.47■□□□□ 0.87
CCDC88B-207ENST00000479965 POTEMA6NI47 508 aa20.46■□□□□ 0.87
CCDC88B-207ENST00000479965 FGGP02679 453 aa20.46■□□□□ 0.87
CCDC88B-207ENST00000479965 BRD2P25440 801 aaKnown RBP20.46■□□□□ 0.87
CCDC88B-207ENST00000479965 NONOQ15233 471 aaKnown RBP eCLIP20.46■□□□□ 0.87
CCDC88B-207ENST00000479965 MYOCDQ8IZQ8 938 aa20.46■□□□□ 0.87
CCDC88B-207ENST00000479965 KCNV2Q8TDN2 545 aa20.46■□□□□ 0.87
CCDC88B-207ENST00000479965 ZHX3Q9H4I2 956 aa20.46■□□□□ 0.87
CCDC88B-207ENST00000479965 BLOC1S4Q9NUP1 217 aa20.46■□□□□ 0.87
CCDC88B-207ENST00000479965 M0R2N6 131 aa20.46■□□□□ 0.87
CCDC88B-207ENST00000479965 KIF3CO14782 793 aa20.46■□□□□ 0.87
CCDC88B-207ENST00000479965 GRIK3Q13003 919 aa20.46■□□□□ 0.87
CCDC88B-207ENST00000479965 GRB10Q13322 594 aa20.46■□□□□ 0.87
CCDC88B-207ENST00000479965 LRRC14Q15048 493 aa20.46■□□□□ 0.87
CCDC88B-207ENST00000479965 EIF1ADQ8N9N8 165 aaKnown RBP20.46■□□□□ 0.87
CCDC88B-207ENST00000479965 JAG2Q9Y219 1238 aa20.46■□□□□ 0.87
CCDC88B-207ENST00000479965 NR2E1Q9Y466 385 aa20.46■□□□□ 0.87
CCDC88B-207ENST00000479965 IGF2BP3O00425 579 aaKnown RBP eCLIP20.45■□□□□ 0.86
CCDC88B-207ENST00000479965 CACNB1Q02641 598 aaPredicted RBP20.45■□□□□ 0.86
CCDC88B-207ENST00000479965 ALKBH5Q6P6C2 394 aaKnown RBP20.45■□□□□ 0.86
CCDC88B-207ENST00000479965 CRELD2Q6UXH1 353 aaPredicted RBP20.45■□□□□ 0.86
CCDC88B-207ENST00000479965 KLHL29Q96CT2 875 aa20.45■□□□□ 0.86
CCDC88B-207ENST00000479965 ECT2Q9H8V3 914 aa20.45■□□□□ 0.86
CCDC88B-207ENST00000479965 SH3GLB2Q9NR46 395 aa20.45■□□□□ 0.86
CCDC88B-207ENST00000479965 BIN2Q9UBW5 565 aaPredicted RBP20.45■□□□□ 0.86
CCDC88B-207ENST00000479965 CYTH3O43739 400 aa20.45■□□□□ 0.86
CCDC88B-207ENST00000479965 IFI16Q16666 785 aaKnown RBP20.45■□□□□ 0.86
CCDC88B-207ENST00000479965 DENND2CQ68D51 928 aa20.45■□□□□ 0.86
CCDC88B-207ENST00000479965 ZNF571Q7Z3V5 609 aaPredicted RBP20.45■□□□□ 0.86
CCDC88B-207ENST00000479965 TBCKQ8TEA7 893 aa20.45■□□□□ 0.86
CCDC88B-207ENST00000479965 PARD3BQ8TEW8 1205 aa20.45■□□□□ 0.86
CCDC88B-207ENST00000479965 MCM9Q9NXL9 1143 aa20.45■□□□□ 0.86
CCDC88B-207ENST00000479965 KCPQ6ZWJ8 1503 aa20.45■□□□□ 0.86
CCDC88B-207ENST00000479965 CCDC188H7C350 402 aa20.44■□□□□ 0.86
CCDC88B-207ENST00000479965 STXBP3O00186 592 aa20.44■□□□□ 0.86
CCDC88B-207ENST00000479965 NQO1P15559 274 aaKnown RBP20.44■□□□□ 0.86
CCDC88B-207ENST00000479965 TRIM68Q6AZZ1 485 aa20.44■□□□□ 0.86
CCDC88B-207ENST00000479965 NEK8Q86SG6 692 aa20.44■□□□□ 0.86
CCDC88B-207ENST00000479965 TLCD1Q96CP7 247 aa20.44■□□□□ 0.86
CCDC88B-207ENST00000479965 CALR3Q96L12 384 aaKnown RBP20.44■□□□□ 0.86
CCDC88B-207ENST00000479965 ZMYND12Q9H0C1 365 aa20.44■□□□□ 0.86
CCDC88B-207ENST00000479965 FAM114A2Q9NRY5 505 aa20.44■□□□□ 0.86
CCDC88B-207ENST00000479965 DDX52Q9Y2R4 599 aaKnown RBP eCLIP20.44■□□□□ 0.86
CCDC88B-207ENST00000479965 MYH7BA7E2Y1 1941 aa20.44■□□□□ 0.86
CCDC88B-207ENST00000479965 USP17L3A6NCW0 530 aa20.44■□□□□ 0.86
CCDC88B-207ENST00000479965 USP17L4A6NCW7 530 aa20.44■□□□□ 0.86
CCDC88B-207ENST00000479965 MAP2K1Q02750 393 aaPredicted RBP20.44■□□□□ 0.86
CCDC88B-207ENST00000479965 USP17L1Q7RTZ2 530 aa20.44■□□□□ 0.86
CCDC88B-207ENST00000479965 ERICH1Q86X53 443 aa20.44■□□□□ 0.86
CCDC88B-207ENST00000479965 SNX29Q8TEQ0 813 aa20.44■□□□□ 0.86
CCDC88B-207ENST00000479965 GLG1Q92896 1179 aa20.44■□□□□ 0.86
CCDC88B-207ENST00000479965 BARHL2Q9NY43 387 aa20.44■□□□□ 0.86
CCDC88B-207ENST00000479965 SNX24Q9Y343 169 aa20.44■□□□□ 0.86
CCDC88B-207ENST00000479965 BAZ2AQ9UIF9 1905 aaKnown RBP20.44■□□□□ 0.86
CCDC88B-207ENST00000479965 SMCO2A6NFE2 343 aa20.44■□□□□ 0.86
CCDC88B-207ENST00000479965 MYBL1P10243 752 aa20.44■□□□□ 0.86
CCDC88B-207ENST00000479965 SYN2Q92777 582 aaPredicted RBP20.44■□□□□ 0.86
CCDC88B-207ENST00000479965 MLXIPLQ9NP71 852 aa20.44■□□□□ 0.86
CCDC88B-207ENST00000479965 DCP1AQ9NPI6 582 aaPredicted RBP20.44■□□□□ 0.86
CCDC88B-207ENST00000479965 THRAP3Q9Y2W1 955 aaKnown RBP20.44■□□□□ 0.86
CCDC88B-207ENST00000479965 CFAP73A6NFT4 308 aa20.43■□□□□ 0.86
CCDC88B-207ENST00000479965 GSTA1P08263 222 aa20.43■□□□□ 0.86
CCDC88B-207ENST00000479965 EIF3BP55884 814 aaKnown RBP20.43■□□□□ 0.86
CCDC88B-207ENST00000479965 SLC35G1Q2M3R5 365 aa20.43■□□□□ 0.86
CCDC88B-207ENST00000479965 AP1ARQ63HQ0 302 aa20.43■□□□□ 0.86
CCDC88B-207ENST00000479965 CCHCR1Q8TD31 782 aa20.43■□□□□ 0.86
CCDC88B-207ENST00000479965 NUDT12Q9BQG2 462 aa20.43■□□□□ 0.86
CCDC88B-207ENST00000479965 PVALEFA0A1B0GWK0 134 aa20.43■□□□□ 0.86
CCDC88B-207ENST00000479965 ASAP2O43150 1006 aa20.43■□□□□ 0.86
CCDC88B-207ENST00000479965 SLC29A2Q14542 456 aa20.43■□□□□ 0.86
CCDC88B-207ENST00000479965 ITIH4Q14624 930 aa20.43■□□□□ 0.86
CCDC88B-207ENST00000479965 KCNK18Q7Z418 384 aa20.43■□□□□ 0.86
CCDC88B-207ENST00000479965 TPCN2Q8NHX9 752 aa20.43■□□□□ 0.86
CCDC88B-207ENST00000479965 NEK9Q8TD19 979 aa20.43■□□□□ 0.86
CCDC88B-207ENST00000479965 ATXN2LQ8WWM7 1075 aaKnown RBP20.43■□□□□ 0.86
CCDC88B-207ENST00000479965 ABCB11O95342 1321 aa20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms