RNA–Protein interactions for RNA: ENST00000479868.6

SEC13-216, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best)

Gene SEC13, Length 2,374 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-216ENST00000479868 TUFT1Q9NNX1 390 aa14.37□□□□□ -0.11
SEC13-216ENST00000479868 COL20A1Q9P218 1284 aa14.37□□□□□ -0.11
SEC13-216ENST00000479868 PUF60Q9UHX1 559 aaKnown RBP14.37□□□□□ -0.11
SEC13-216ENST00000479868 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.37□□□□□ -0.11
SEC13-216ENST00000479868 SFI1A8K8P3 1242 aa14.36□□□□□ -0.11
SEC13-216ENST00000479868 ZSCAN20P17040 1043 aaPredicted RBP14.36□□□□□ -0.11
SEC13-216ENST00000479868 HSD17B4P51659 736 aa14.36□□□□□ -0.11
SEC13-216ENST00000479868 PRELPP51888 382 aa14.36□□□□□ -0.11
SEC13-216ENST00000479868 SAMD7Q7Z3H4 446 aa14.36□□□□□ -0.11
SEC13-216ENST00000479868 SRGAP1Q7Z6B7 1085 aa14.36□□□□□ -0.11
SEC13-216ENST00000479868 NEK11Q8NG66 645 aa14.36□□□□□ -0.11
SEC13-216ENST00000479868 CRACR2AQ9BSW2 395 aa14.36□□□□□ -0.11
SEC13-216ENST00000479868 DEFB129Q9H1M3 183 aa14.36□□□□□ -0.11
SEC13-216ENST00000479868 UNC45AQ9H3U1 944 aa14.36□□□□□ -0.11
SEC13-216ENST00000479868 WRAP73Q9P2S5 460 aaPredicted RBP14.36□□□□□ -0.11
SEC13-216ENST00000479868 TRAF3IP3Q9Y228 551 aa14.36□□□□□ -0.11
SEC13-216ENST00000479868 DUSP10Q9Y6W6 482 aa14.36□□□□□ -0.11
SEC13-216ENST00000479868 NOL4O94818 638 aa14.36□□□□□ -0.11
SEC13-216ENST00000479868 IPO7O95373 1038 aaKnown RBP14.36□□□□□ -0.11
SEC13-216ENST00000479868 CHMP4BP1P59074 171 aa14.36□□□□□ -0.11
SEC13-216ENST00000479868 AMPD2Q01433 879 aa14.36□□□□□ -0.11
SEC13-216ENST00000479868 APBA1Q02410 837 aa14.36□□□□□ -0.11
SEC13-216ENST00000479868 KCNA1Q09470 495 aa14.36□□□□□ -0.11
SEC13-216ENST00000479868 PRPF38AQ8NAV1 312 aaKnown RBP14.36□□□□□ -0.11
SEC13-216ENST00000479868 GOLGA1Q92805 767 aa14.36□□□□□ -0.11
SEC13-216ENST00000479868 HOOK2Q96ED9 719 aa14.36□□□□□ -0.11
SEC13-216ENST00000479868 ENC1O14682 589 aa14.35□□□□□ -0.11
SEC13-216ENST00000479868 CETN3O15182 167 aa14.35□□□□□ -0.11
SEC13-216ENST00000479868 WDR46O15213 610 aaKnown RBP14.35□□□□□ -0.11
SEC13-216ENST00000479868 KRT86O43790 486 aa14.35□□□□□ -0.11
SEC13-216ENST00000479868 TBCAO75347 108 aaKnown RBP14.35□□□□□ -0.11
SEC13-216ENST00000479868 ITGB5P18084 799 aa14.35□□□□□ -0.11
SEC13-216ENST00000479868 EIF4A3P38919 411 aaKnown RBP14.35□□□□□ -0.11
SEC13-216ENST00000479868 TNFAIP1Q13829 316 aa14.35□□□□□ -0.11
SEC13-216ENST00000479868 PDXDC1Q6P996 788 aa14.35□□□□□ -0.11
SEC13-216ENST00000479868 C1orf186Q6ZWK4 172 aa14.35□□□□□ -0.11
SEC13-216ENST00000479868 CACNA2D4Q7Z3S7 1137 aa14.35□□□□□ -0.11
SEC13-216ENST00000479868 CPXCR1Q8N123 301 aa14.35□□□□□ -0.11
SEC13-216ENST00000479868 GPR161Q8N6U8 529 aaKnown RBP14.35□□□□□ -0.11
SEC13-216ENST00000479868 CLEC4DQ8WXI8 215 aa14.35□□□□□ -0.11
SEC13-216ENST00000479868 NLRC4Q9NPP4 1024 aa14.35□□□□□ -0.11
SEC13-216ENST00000479868 OGFRQ9NZT2 677 aa14.35□□□□□ -0.11
SEC13-216ENST00000479868 IPO5O00410 1097 aaKnown RBP14.34□□□□□ -0.11
SEC13-216ENST00000479868 GCNT3O95395 438 aa14.34□□□□□ -0.11
SEC13-216ENST00000479868 KIF11P52732 1056 aa14.34□□□□□ -0.11
SEC13-216ENST00000479868 SETQ01105 290 aaPredicted RBP14.34□□□□□ -0.11
SEC13-216ENST00000479868 TUBB2AQ13885 445 aa14.34□□□□□ -0.11
SEC13-216ENST00000479868 B3GNT9Q6UX72 402 aa14.34□□□□□ -0.11
SEC13-216ENST00000479868 MICALL2Q8IY33 904 aa14.34□□□□□ -0.11
SEC13-216ENST00000479868 KCTD17Q8N5Z5 321 aa14.34□□□□□ -0.11
SEC13-216ENST00000479868 CEP112Q8N8E3 955 aa14.34□□□□□ -0.11
SEC13-216ENST00000479868 IL31RAQ8NI17 732 aa14.34□□□□□ -0.11
SEC13-216ENST00000479868 RABGGTAQ92696 567 aa14.34□□□□□ -0.11
SEC13-216ENST00000479868 TUBB2BQ9BVA1 445 aa14.34□□□□□ -0.11
SEC13-216ENST00000479868 KIAA1683Q9H0B3 1180 aa14.34□□□□□ -0.11
SEC13-216ENST00000479868 ASTN1O14525 1302 aa14.34□□□□□ -0.11
SEC13-216ENST00000479868 PDXKO00764 312 aa14.34□□□□□ -0.11
SEC13-216ENST00000479868 GMPSP49915 693 aaPredicted RBP14.34□□□□□ -0.11
SEC13-216ENST00000479868 VAV2P52735 878 aa14.34□□□□□ -0.11
SEC13-216ENST00000479868 BMT2Q1RMZ1 405 aa14.34□□□□□ -0.11
SEC13-216ENST00000479868 TBC1D10BQ4KMP7 808 aaPredicted RBP14.34□□□□□ -0.11
SEC13-216ENST00000479868 DHX37Q8IY37 1157 aaKnown RBP14.34□□□□□ -0.11
SEC13-216ENST00000479868 LPAR1Q92633 364 aa14.34□□□□□ -0.11
SEC13-216ENST00000479868 MXRA8Q9BRK3 442 aa14.34□□□□□ -0.11
SEC13-216ENST00000479868 LSM14BQ9BX40 385 aaKnown RBP14.34□□□□□ -0.11
SEC13-216ENST00000479868 OLFML3Q9NRN5 406 aa14.34□□□□□ -0.11
SEC13-216ENST00000479868 CEP72Q9P209 647 aa14.34□□□□□ -0.11
SEC13-216ENST00000479868 HDAC6Q9UBN7 1215 aa14.34□□□□□ -0.11
SEC13-216ENST00000479868 MYO6Q9UM54 1294 aa14.34□□□□□ -0.11
SEC13-216ENST00000479868 RPTORQ8N122 1335 aa14.34□□□□□ -0.11
SEC13-216ENST00000479868 DDX39AO00148 427 aaKnown RBP14.33□□□□□ -0.11
SEC13-216ENST00000479868 CTNND1O60716 968 aaKnown RBP14.33□□□□□ -0.11
SEC13-216ENST00000479868 ATP1A1P05023 1023 aaKnown RBP14.33□□□□□ -0.11
SEC13-216ENST00000479868 ALAS1P13196 640 aa14.33□□□□□ -0.11
SEC13-216ENST00000479868 RPS12P25398 132 aaKnown RBP14.33□□□□□ -0.11
SEC13-216ENST00000479868 KCNH2Q12809 1159 aa14.33□□□□□ -0.11
SEC13-216ENST00000479868 SPA17Q15506 151 aa14.33□□□□□ -0.11
SEC13-216ENST00000479868 HGSNATQ68CP4 663 aa14.33□□□□□ -0.11
SEC13-216ENST00000479868 PURBQ96QR8 312 aaKnown RBP14.33□□□□□ -0.11
SEC13-216ENST00000479868 TEKT3Q9BXF9 490 aa14.33□□□□□ -0.11
SEC13-216ENST00000479868 WDR11Q9BZH6 1224 aa14.33□□□□□ -0.11
SEC13-216ENST00000479868 EDEM3Q9BZQ6 932 aa14.33□□□□□ -0.11
SEC13-216ENST00000479868 IKZF4Q9H2S9 585 aa14.33□□□□□ -0.11
SEC13-216ENST00000479868 RAVER2Q9HCJ3 691 aaKnown RBP14.33□□□□□ -0.11
SEC13-216ENST00000479868 HOMER2Q9NSB8 354 aa14.33□□□□□ -0.11
SEC13-216ENST00000479868 PKD2L1Q9P0L9 805 aa14.33□□□□□ -0.11
SEC13-216ENST00000479868 HACL1Q9UJ83 578 aa14.33□□□□□ -0.11
SEC13-216ENST00000479868 FAM184BQ9ULE4 1060 aa14.33□□□□□ -0.11
SEC13-216ENST00000479868 BCS1LQ9Y276 419 aa14.33□□□□□ -0.11
SEC13-216ENST00000479868 MACROD2A1Z1Q3 448 aa14.33□□□□□ -0.12
SEC13-216ENST00000479868 POLR2FP61218 127 aaKnown RBP14.33□□□□□ -0.12
SEC13-216ENST00000479868 RASSF7Q02833 373 aa14.33□□□□□ -0.12
SEC13-216ENST00000479868 MTMR2Q13614 643 aa14.33□□□□□ -0.12
SEC13-216ENST00000479868 MUM1L1Q5H9M0 696 aa14.33□□□□□ -0.12
SEC13-216ENST00000479868 BANK1Q8NDB2 785 aa14.33□□□□□ -0.12
SEC13-216ENST00000479868 PARD6BQ9BYG5 372 aa14.33□□□□□ -0.12
SEC13-216ENST00000479868 IFIH1Q9BYX4 1025 aaKnown RBP14.33□□□□□ -0.12
SEC13-216ENST00000479868 DEF6Q9H4E7 631 aa14.33□□□□□ -0.12
SEC13-216ENST00000479868 SLC38A10Q9HBR0 1119 aa14.33□□□□□ -0.12
SEC13-216ENST00000479868 KCNH7Q9NS40 1196 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms