RNA–Protein interactions for RNA: ENST00000477935.1

VPS50-214, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-214ENST00000477935 MAP3K1Q13233 1512 aa6.8□□□□□ -1.32
VPS50-214ENST00000477935 SYCP2Q9BX26 1530 aa6.8□□□□□ -1.32
VPS50-214ENST00000477935 TMEM2Q9UHN6 1383 aa6.8□□□□□ -1.32
VPS50-214ENST00000477935 COL16A1Q07092 1604 aaPredicted RBP6.79□□□□□ -1.32
VPS50-214ENST00000477935 NKTRP30414 1462 aaKnown RBP6.79□□□□□ -1.32
VPS50-214ENST00000477935 INO80Q9ULG1 1556 aaPredicted RBP6.79□□□□□ -1.32
VPS50-214ENST00000477935 AQP7O14520 342 aa6.79□□□□□ -1.32
VPS50-214ENST00000477935 ZSCAN22P10073 491 aaPredicted RBP6.79□□□□□ -1.32
VPS50-214ENST00000477935 CACNB2Q08289 660 aaPredicted RBP6.79□□□□□ -1.32
VPS50-214ENST00000477935 KRTAP19-4Q3LI73 84 aa6.79□□□□□ -1.32
VPS50-214ENST00000477935 ETV3LQ6ZN32 361 aa6.79□□□□□ -1.32
VPS50-214ENST00000477935 MIB1Q86YT6 1006 aa6.79□□□□□ -1.32
VPS50-214ENST00000477935 MRFAP1L1Q96HT8 127 aa6.79□□□□□ -1.32
VPS50-214ENST00000477935 PWWP2AQ96N64 755 aa6.79□□□□□ -1.32
VPS50-214ENST00000477935 PTCH2Q9Y6C5 1203 aa6.79□□□□□ -1.32
VPS50-214ENST00000477935 ADGBQ8N7X0 1667 aa6.79□□□□□ -1.32
VPS50-214ENST00000477935 TADA3O75528 432 aa6.78□□□□□ -1.32
VPS50-214ENST00000477935 SOD2P04179 222 aa6.78□□□□□ -1.32
VPS50-214ENST00000477935 AFF3P51826 1226 aaKnown RBP6.78□□□□□ -1.32
VPS50-214ENST00000477935 GABREP78334 506 aa6.78□□□□□ -1.32
VPS50-214ENST00000477935 LCNL1Q6ZST4 164 aa6.78□□□□□ -1.32
VPS50-214ENST00000477935 B3GNT8Q7Z7M8 397 aa6.78□□□□□ -1.32
VPS50-214ENST00000477935 MTDHQ86UE4 582 aaKnown RBP6.78□□□□□ -1.32
VPS50-214ENST00000477935 TMEM151BQ8IW70 566 aa6.78□□□□□ -1.32
VPS50-214ENST00000477935 ZSWIM2Q8NEG5 633 aa6.78□□□□□ -1.32
VPS50-214ENST00000477935 SMARCC2Q8TAQ2 1214 aa6.78□□□□□ -1.32
VPS50-214ENST00000477935 KCNJ15Q99712 375 aa6.78□□□□□ -1.32
VPS50-214ENST00000477935 ALG1Q9BT22 464 aa6.78□□□□□ -1.32
VPS50-214ENST00000477935 SLC6A20Q9NP91 592 aa6.78□□□□□ -1.32
VPS50-214ENST00000477935 PCDHB4Q9Y5E5 795 aa6.78□□□□□ -1.32
VPS50-214ENST00000477935 NCOA2Q15596 1464 aa6.78□□□□□ -1.32
VPS50-214ENST00000477935 CCDC18Q5T9S5 1454 aa6.78□□□□□ -1.32
VPS50-214ENST00000477935 NWD1Q149M9 1564 aa6.78□□□□□ -1.32
VPS50-214ENST00000477935 BLMP54132 1417 aaPredicted RBP6.77□□□□□ -1.33
VPS50-214ENST00000477935 EEA1Q15075 1411 aa6.77□□□□□ -1.33
VPS50-214ENST00000477935 SETD5Q9C0A6 1442 aa6.77□□□□□ -1.33
VPS50-214ENST00000477935 LRP5O75197 1615 aa6.77□□□□□ -1.33
VPS50-214ENST00000477935 PLA2G1BP04054 148 aaKnown RBP6.77□□□□□ -1.33
VPS50-214ENST00000477935 TCERG1LQ5VWI1 586 aa6.77□□□□□ -1.33
VPS50-214ENST00000477935 BRINP3Q76B58 766 aa6.77□□□□□ -1.33
VPS50-214ENST00000477935 OTOP3Q7RTS5 596 aa6.77□□□□□ -1.33
VPS50-214ENST00000477935 PIP4K2CQ8TBX8 421 aa6.77□□□□□ -1.33
VPS50-214ENST00000477935 SMOC1Q9H4F8 434 aa6.77□□□□□ -1.33
VPS50-214ENST00000477935 CCNB3Q8WWL7 1395 aa6.77□□□□□ -1.33
VPS50-214ENST00000477935 SHPRHQ149N8 1683 aa6.77□□□□□ -1.33
VPS50-214ENST00000477935 EP400Q96L91 3159 aa6.77□□□□□ -1.33
VPS50-214ENST00000477935 AHDC1Q5TGY3 1603 aaPredicted RBP6.76□□□□□ -1.33
VPS50-214ENST00000477935 TCRBV5S2A0A599 114 aa6.76□□□□□ -1.33
VPS50-214ENST00000477935 FAM47E-STBD1D6RA91 191 aa6.76□□□□□ -1.33
VPS50-214ENST00000477935 KRIT1O00522 736 aa6.76□□□□□ -1.33
VPS50-214ENST00000477935 MAFKO60675 156 aa6.76□□□□□ -1.33
VPS50-214ENST00000477935 C8BP07358 591 aa6.76□□□□□ -1.33
VPS50-214ENST00000477935 TSPY4P0CV99 314 aa6.76□□□□□ -1.33
VPS50-214ENST00000477935 TSPY10P0CW01 314 aa6.76□□□□□ -1.33
VPS50-214ENST00000477935 GNAT1P11488 350 aa6.76□□□□□ -1.33
VPS50-214ENST00000477935 HTRA3P83110 453 aa6.76□□□□□ -1.33
VPS50-214ENST00000477935 CYP4F22Q6NT55 531 aa6.76□□□□□ -1.33
VPS50-214ENST00000477935 SIAH1Q8IUQ4 282 aa6.76□□□□□ -1.33
VPS50-214ENST00000477935 FAM126BQ8IXS8 530 aa6.76□□□□□ -1.33
VPS50-214ENST00000477935 NLGN1Q8N2Q7 840 aa6.76□□□□□ -1.33
VPS50-214ENST00000477935 ARRDC4Q8NCT1 418 aa6.76□□□□□ -1.33
VPS50-214ENST00000477935 PHOSPHO1Q8TCT1 267 aa6.76□□□□□ -1.33
VPS50-214ENST00000477935 PIF1Q9H611 641 aa6.76□□□□□ -1.33
VPS50-214ENST00000477935 IPPKQ9H8X2 491 aa6.76□□□□□ -1.33
VPS50-214ENST00000477935 SLC52A2Q9HAB3 445 aa6.76□□□□□ -1.33
VPS50-214ENST00000477935 MYOTQ9UBF9 498 aa6.76□□□□□ -1.33
VPS50-214ENST00000477935 PCDHA8Q9Y5H6 950 aa6.76□□□□□ -1.33
VPS50-214ENST00000477935 PMF1-BGLAPU3KQ54 211 aa6.76□□□□□ -1.33
VPS50-214ENST00000477935 ERVK-7P63135 1459 aa6.76□□□□□ -1.33
VPS50-214ENST00000477935 TIAM1Q13009 1591 aa6.75□□□□□ -1.33
VPS50-214ENST00000477935 MBD5Q9P267 1494 aa6.75□□□□□ -1.33
VPS50-214ENST00000477935 CCDC163A0A0D9SF12 145 aa6.75□□□□□ -1.33
VPS50-214ENST00000477935 CYP2C8P10632 490 aa6.75□□□□□ -1.33
VPS50-214ENST00000477935 COL6A2P12110 1019 aa6.75□□□□□ -1.33
VPS50-214ENST00000477935 GUCY1A3Q02108 690 aa6.75□□□□□ -1.33
VPS50-214ENST00000477935 SPIRE1Q08AE8 756 aa6.75□□□□□ -1.33
VPS50-214ENST00000477935 PAK1Q13153 545 aa6.75□□□□□ -1.33
VPS50-214ENST00000477935 CD300LDQ6UXZ3 194 aa6.75□□□□□ -1.33
VPS50-214ENST00000477935 SPOCD1Q6ZMY3 1216 aa6.75□□□□□ -1.33
VPS50-214ENST00000477935 FAM26EQ8N5C1 309 aa6.75□□□□□ -1.33
VPS50-214ENST00000477935 FNIP1Q8TF40 1166 aa6.75□□□□□ -1.33
VPS50-214ENST00000477935 DDX11Q96FC9 970 aa6.75□□□□□ -1.33
VPS50-214ENST00000477935 ASH2LQ9UBL3 628 aa6.75□□□□□ -1.33
VPS50-214ENST00000477935 NDOR1Q9UHB4 597 aa6.75□□□□□ -1.33
VPS50-214ENST00000477935 TBX22Q9Y458 520 aa6.75□□□□□ -1.33
VPS50-214ENST00000477935 BTBD11A6QL63 1104 aa6.74□□□□□ -1.33
VPS50-214ENST00000477935 ARVCFO00192 962 aa6.74□□□□□ -1.33
VPS50-214ENST00000477935 SLC27A2O14975 620 aa6.74□□□□□ -1.33
VPS50-214ENST00000477935 NKRFO15226 690 aaKnown RBP eCLIP6.74□□□□□ -1.33
VPS50-214ENST00000477935 EFCAB14O75071 495 aa6.74□□□□□ -1.33
VPS50-214ENST00000477935 CRTAMO95727 393 aa6.74□□□□□ -1.33
VPS50-214ENST00000477935 NAT1P18440 290 aa6.74□□□□□ -1.33
VPS50-214ENST00000477935 CAP1Q01518 475 aa6.74□□□□□ -1.33
VPS50-214ENST00000477935 SQSTM1Q13501 440 aa6.74□□□□□ -1.33
VPS50-214ENST00000477935 VMACQ2NL98 169 aa6.74□□□□□ -1.33
VPS50-214ENST00000477935 TRIM61Q5EBN2 209 aa6.74□□□□□ -1.33
VPS50-214ENST00000477935 HABP4Q5JVS0 413 aaKnown RBP6.74□□□□□ -1.33
VPS50-214ENST00000477935 DEFB132Q7Z7B7 95 aa6.74□□□□□ -1.33
VPS50-214ENST00000477935 ZC3H18Q86VM9 953 aaKnown RBP6.74□□□□□ -1.33
VPS50-214ENST00000477935 GSTCDQ8NEC7 633 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms