RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 V9GY48 417 aaPredicted RBP14.03□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 NFASCO94856 1347 aa14.03□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 ATG2AQ2TAZ0 1938 aa14.03□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 EVPLQ92817 2033 aa14.02□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 WDR81Q562E7 1941 aa14.02□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 IGKV6D-21A0A0A0MT36 114 aa14.02□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 H3BNC9 293 aa14.02□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 hCG_1984214I3L0E3 225 aa14.02□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 STXBP3O00186 592 aa14.02□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 ENPP3O14638 875 aa14.02□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 FOSP01100 380 aaPredicted RBP14.02□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 ARP10275 920 aa14.02□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 INSRRP14616 1297 aa14.02□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 ITGB3BPQ13352 177 aaPredicted RBP14.02□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 COL19A1Q14993 1142 aa14.02□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 CEP55Q53EZ4 464 aa14.02□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 FBXO47Q5MNV8 452 aa14.02□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 SYNE3Q6ZMZ3 975 aa14.02□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 PLPPR4Q7Z2D5 763 aa14.02□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 ZNF713Q8N859 430 aaPredicted RBP14.02□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 FBXO22Q8NEZ5 403 aa14.02□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 MRPL38Q96DV4 380 aaKnown RBP14.02□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 JPH1Q9HDC5 661 aaPredicted RBP14.02□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 SLC9A2Q9UBY0 812 aa14.02□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 TUBE1Q9UJT0 475 aa14.02□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 SQORQ9Y6N5 450 aa14.02□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 RRN3P2A6NIE6 340 aa14.01□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 C5orf67F2Z3F1 127 aa14.01□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 DHX15O43143 795 aaKnown RBP14.01□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 ZBTB43O43298 467 aa14.01□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 SREBF1P36956 1147 aa14.01□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 RTN1Q16799 776 aa14.01□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 RTN4RL1Q86UN2 441 aaPredicted RBP14.01□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 TMEM192Q8IY95 271 aa14.01□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 IL27Q8NEV9 243 aa14.01□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 DNAJB3Q8WWF6 145 aa14.01□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 GLG1Q92896 1179 aa14.01□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 ZNF689Q96CS4 500 aaPredicted RBP14.01□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 AGXT2Q9BYV1 514 aa14.01□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 AGO4Q9HCK5 861 aaKnown RBP14.01□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 MYH9P35579 1960 aaKnown RBP14□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 SMCO2A6NFE2 343 aa14□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 ADAMTS3O15072 1205 aa14□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 UPP2O95045 317 aa14□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 RPLP2P05387 115 aaKnown RBP14□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 CYP3A4P08684 503 aa14□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 GHRP10912 638 aa14□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 MARK3P27448 753 aa14□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 ADD1P35611 737 aaKnown RBP14□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 NAPAP54920 295 aa14□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 ACTR2P61160 394 aa14□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 KRT32Q14532 448 aa14□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 PLCB4Q15147 1175 aa14□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 NIPA1Q7RTP0 329 aa14□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 CLP1Q92989 425 aaKnown RBP14□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 PGBD1Q96JS3 809 aa14□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 YME1L1Q96TA2 773 aa14□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 ANO3Q9BYT9 981 aa14□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 GLT8D2Q9H1C3 349 aa14□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 UBE2ZQ9H832 354 aaPredicted RBP14□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 AGO3Q9H9G7 860 aaKnown RBP14□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 PKD2L1Q9P0L9 805 aa14□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 PCDHA2Q9Y5H9 948 aa14□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 CDY2AQ9Y6F7 541 aa14□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 NID2Q14112 1375 aa13.99□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 KDM3AQ9Y4C1 1321 aa13.99□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 IGLV3-22A0A075B6J6 115 aa13.99□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 ESYT2A0FGR8 921 aa13.99□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 CDC45O75419 566 aa13.99□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 CCNE2O96020 404 aa13.99□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 HMGB1P09429 215 aaKnown RBP13.99□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 ADCY7P51828 1080 aa13.99□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 MRPS6P82932 125 aaKnown RBP13.99□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 AP3B2Q13367 1082 aa13.99□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 PKN1Q16512 942 aa13.99□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 PFKFB3Q16875 520 aaPredicted RBP13.99□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 LEXMQ3ZCV2 418 aa13.99□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 ABHD15Q6UXT9 468 aa13.99□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 TSHZ1Q6ZSZ6 1077 aa13.99□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 RSPH3Q86UC2 560 aa13.99□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.99□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 NEK9Q8TD19 979 aa13.99□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 LINC01599Q8WXQ3 324 aa13.99□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 ZBTB10Q96DT7 871 aa13.99□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 IL17RAQ96F46 866 aa13.99□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 ZMYND12Q9H0C1 365 aa13.99□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 CD320Q9NPF0 282 aa13.99□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 TMEM260Q9NX78 707 aa13.99□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 C5orf42Q9H799 3197 aa13.98□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 KLF18A0A0U1RQI7 1052 aa13.98□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 FAM86B1E9PN63 330 aa13.98□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 EDIL3O43854 480 aa13.98□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 RB1P06400 928 aa13.98□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 FAM86B2P0C5J1 330 aa13.98□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 COL9A1P20849 921 aa13.98□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 HSPA4P34932 840 aa13.98□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 SLC26A2P50443 739 aa13.98□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 STAT5BP51692 787 aa13.98□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 MAPK8IP2Q13387 824 aaPredicted RBP13.98□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 GPM6BQ13491 265 aa13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms