RNA–Protein interactions for RNA: ENST00000475235.1

HLA-DOB-208, Transcript of major histocompatibility complex, class II, DO beta, humanhuman

Gene HLA-DOB, Length 1,514 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOB-208ENST00000475235 JPH1Q9HDC5 661 aaPredicted RBP13.08□□□□□ -0.31
HLA-DOB-208ENST00000475235 TMEM260Q9NX78 707 aa13.08□□□□□ -0.31
HLA-DOB-208ENST00000475235 ERAP1Q9NZ08 941 aa13.08□□□□□ -0.31
HLA-DOB-208ENST00000475235 PKD2L1Q9P0L9 805 aa13.08□□□□□ -0.31
HLA-DOB-208ENST00000475235 CXXC1Q9P0U4 656 aaPredicted RBP13.08□□□□□ -0.31
HLA-DOB-208ENST00000475235 NFASCO94856 1347 aa13.08□□□□□ -0.32
HLA-DOB-208ENST00000475235 MEIS1O00470 390 aa13.08□□□□□ -0.32
HLA-DOB-208ENST00000475235 CAND2O75155 1236 aa13.08□□□□□ -0.32
HLA-DOB-208ENST00000475235 CDKL5O76039 1030 aa13.08□□□□□ -0.32
HLA-DOB-208ENST00000475235 BAIAP3O94812 1187 aa13.08□□□□□ -0.32
HLA-DOB-208ENST00000475235 DEXIO95424 95 aa13.08□□□□□ -0.32
HLA-DOB-208ENST00000475235 CYP3A4P08684 503 aa13.08□□□□□ -0.32
HLA-DOB-208ENST00000475235 ANKRD1Q15327 319 aa13.08□□□□□ -0.32
HLA-DOB-208ENST00000475235 TNPO1Q92973 898 aaKnown RBP13.08□□□□□ -0.32
HLA-DOB-208ENST00000475235 VWCEQ96DN2 955 aa13.08□□□□□ -0.32
HLA-DOB-208ENST00000475235 FAM161BQ96MY7 647 aa13.08□□□□□ -0.32
HLA-DOB-208ENST00000475235 IPO9Q96P70 1041 aaKnown RBP13.08□□□□□ -0.32
HLA-DOB-208ENST00000475235 PBX4Q9BYU1 374 aa13.08□□□□□ -0.32
HLA-DOB-208ENST00000475235 RNPEPQ9H4A4 650 aa13.08□□□□□ -0.32
HLA-DOB-208ENST00000475235 SLC9A2Q9UBY0 812 aa13.08□□□□□ -0.32
HLA-DOB-208ENST00000475235 MSRAQ9UJ68 235 aa13.08□□□□□ -0.32
HLA-DOB-208ENST00000475235 NRCAMQ92823 1304 aa13.07□□□□□ -0.32
HLA-DOB-208ENST00000475235 GSTTP1A0A1W2PQM5 241 aa13.07□□□□□ -0.32
HLA-DOB-208ENST00000475235 ZNF200P98182 395 aaPredicted RBP13.07□□□□□ -0.32
HLA-DOB-208ENST00000475235 TRIM50Q86XT4 487 aa13.07□□□□□ -0.32
HLA-DOB-208ENST00000475235 CYP2W1Q8TAV3 490 aa13.07□□□□□ -0.32
HLA-DOB-208ENST00000475235 GLG1Q92896 1179 aa13.07□□□□□ -0.32
HLA-DOB-208ENST00000475235 IL17RAQ96F46 866 aa13.07□□□□□ -0.32
HLA-DOB-208ENST00000475235 GUCD1Q96NT3 240 aa13.07□□□□□ -0.32
HLA-DOB-208ENST00000475235 SLC9A7Q96T83 725 aa13.07□□□□□ -0.32
HLA-DOB-208ENST00000475235 C22orf23Q9BZE7 217 aa13.07□□□□□ -0.32
HLA-DOB-208ENST00000475235 TTYH1Q9H313 450 aaPredicted RBP13.07□□□□□ -0.32
HLA-DOB-208ENST00000475235 SMARCAD1Q9H4L7 1026 aa13.07□□□□□ -0.32
HLA-DOB-208ENST00000475235 AZI2Q9H6S1 392 aa13.07□□□□□ -0.32
HLA-DOB-208ENST00000475235 AGO4Q9HCK5 861 aaKnown RBP13.07□□□□□ -0.32
HLA-DOB-208ENST00000475235 EMSYQ7Z589 1322 aa13.07□□□□□ -0.32
HLA-DOB-208ENST00000475235 CXCL10P02778 98 aa13.06□□□□□ -0.32
HLA-DOB-208ENST00000475235 ARP10275 920 aa13.06□□□□□ -0.32
HLA-DOB-208ENST00000475235 ATP2A2P16615 1042 aaKnown RBP13.06□□□□□ -0.32
HLA-DOB-208ENST00000475235 THPOP40225 353 aa13.06□□□□□ -0.32
HLA-DOB-208ENST00000475235 NLRP5P59047 1200 aa13.06□□□□□ -0.32
HLA-DOB-208ENST00000475235 STK3Q13188 491 aa13.06□□□□□ -0.32
HLA-DOB-208ENST00000475235 HIC1Q14526 733 aa13.06□□□□□ -0.32
HLA-DOB-208ENST00000475235 ZKSCAN8Q15776 578 aaPredicted RBP13.06□□□□□ -0.32
HLA-DOB-208ENST00000475235 TRIM71Q2Q1W2 868 aaKnown RBP13.06□□□□□ -0.32
HLA-DOB-208ENST00000475235 PHOSPHO2Q8TCD6 241 aa13.06□□□□□ -0.32
HLA-DOB-208ENST00000475235 CRYGNQ8WXF5 182 aa13.06□□□□□ -0.32
HLA-DOB-208ENST00000475235 SLKQ9H2G2 1235 aaPredicted RBP13.06□□□□□ -0.32
HLA-DOB-208ENST00000475235 SETD4Q9NVD3 440 aa13.06□□□□□ -0.32
HLA-DOB-208ENST00000475235 VPS54Q9P1Q0 977 aa13.06□□□□□ -0.32
HLA-DOB-208ENST00000475235 TELO2Q9Y4R8 837 aa13.06□□□□□ -0.32
HLA-DOB-208ENST00000475235 C19orf67A6NJJ6 358 aa13.05□□□□□ -0.32
HLA-DOB-208ENST00000475235 GRXCR1A8MXD5 290 aa13.05□□□□□ -0.32
HLA-DOB-208ENST00000475235 RSPH10B2B2RC85 870 aa13.05□□□□□ -0.32
HLA-DOB-208ENST00000475235 FAM86B1E9PN63 330 aa13.05□□□□□ -0.32
HLA-DOB-208ENST00000475235 TREHO43280 583 aa13.05□□□□□ -0.32
HLA-DOB-208ENST00000475235 EFCAB14O75071 495 aa13.05□□□□□ -0.32
HLA-DOB-208ENST00000475235 PPFIA3O75145 1194 aa13.05□□□□□ -0.32
HLA-DOB-208ENST00000475235 FAM86B2P0C5J1 330 aa13.05□□□□□ -0.32
HLA-DOB-208ENST00000475235 RSPH10BP0C881 870 aa13.05□□□□□ -0.32
HLA-DOB-208ENST00000475235 ZNF618Q5T7W0 954 aa13.05□□□□□ -0.32
HLA-DOB-208ENST00000475235 GALNT17Q6IS24 598 aa13.05□□□□□ -0.32
HLA-DOB-208ENST00000475235 CNKSR3Q6P9H4 555 aa13.05□□□□□ -0.32
HLA-DOB-208ENST00000475235 PLA2G4DQ86XP0 818 aa13.05□□□□□ -0.32
HLA-DOB-208ENST00000475235 CDX2Q99626 313 aaPredicted RBP13.05□□□□□ -0.32
HLA-DOB-208ENST00000475235 LARP6Q9BRS8 491 aaKnown RBP13.05□□□□□ -0.32
HLA-DOB-208ENST00000475235 ZNF576Q9H609 170 aa13.05□□□□□ -0.32
HLA-DOB-208ENST00000475235 IGLV3-22A0A075B6J6 115 aa13.04□□□□□ -0.32
HLA-DOB-208ENST00000475235 NBNO60934 754 aa13.04□□□□□ -0.32
HLA-DOB-208ENST00000475235 LGR5O75473 907 aa13.04□□□□□ -0.32
HLA-DOB-208ENST00000475235 RPLP2P05387 115 aaKnown RBP13.04□□□□□ -0.32
HLA-DOB-208ENST00000475235 CIITAP33076 1130 aa13.04□□□□□ -0.32
HLA-DOB-208ENST00000475235 PBX2P40425 430 aa13.04□□□□□ -0.32
HLA-DOB-208ENST00000475235 KCNJ6P48051 423 aa13.04□□□□□ -0.32
HLA-DOB-208ENST00000475235 SLC26A2P50443 739 aa13.04□□□□□ -0.32
HLA-DOB-208ENST00000475235 ACTR2P61160 394 aa13.04□□□□□ -0.32
HLA-DOB-208ENST00000475235 ADAM17P78536 824 aa13.04□□□□□ -0.32
HLA-DOB-208ENST00000475235 SATB1Q01826 763 aa13.04□□□□□ -0.32
HLA-DOB-208ENST00000475235 SCRN1Q12765 414 aa13.04□□□□□ -0.32
HLA-DOB-208ENST00000475235 PPFIA1Q13136 1202 aa13.04□□□□□ -0.32
HLA-DOB-208ENST00000475235 ITGB3BPQ13352 177 aaPredicted RBP13.04□□□□□ -0.32
HLA-DOB-208ENST00000475235 TAF2Q6P1X5 1199 aa13.04□□□□□ -0.32
HLA-DOB-208ENST00000475235 TRAF7Q6Q0C0 670 aa13.04□□□□□ -0.32
HLA-DOB-208ENST00000475235 PLPPR4Q7Z2D5 763 aa13.04□□□□□ -0.32
HLA-DOB-208ENST00000475235 LMBR1Q8WVP7 490 aa13.04□□□□□ -0.32
HLA-DOB-208ENST00000475235 WNT8BQ93098 351 aa13.04□□□□□ -0.32
HLA-DOB-208ENST00000475235 SLC28A3Q9HAS3 691 aa13.04□□□□□ -0.32
HLA-DOB-208ENST00000475235 TBC1D22BQ9NU19 505 aa13.04□□□□□ -0.32
HLA-DOB-208ENST00000475235 TCEAL9Q9UHQ7 104 aa13.04□□□□□ -0.32
HLA-DOB-208ENST00000475235 PCDHA4Q9UN74 947 aa13.04□□□□□ -0.32
HLA-DOB-208ENST00000475235 PCDHA11Q9Y5I1 949 aa13.04□□□□□ -0.32
HLA-DOB-208ENST00000475235 ABHD14A-ACY1A0A1B0GW23 586 aa13.03□□□□□ -0.32
HLA-DOB-208ENST00000475235 HAX1O00165 279 aa13.03□□□□□ -0.32
HLA-DOB-208ENST00000475235 IPO5O00410 1097 aaKnown RBP13.03□□□□□ -0.32
HLA-DOB-208ENST00000475235 PFKFB2O60825 505 aa13.03□□□□□ -0.32
HLA-DOB-208ENST00000475235 XBP1P17861 261 aa13.03□□□□□ -0.32
HLA-DOB-208ENST00000475235 MARK3P27448 753 aa13.03□□□□□ -0.32
HLA-DOB-208ENST00000475235 USP11P51784 963 aa13.03□□□□□ -0.32
HLA-DOB-208ENST00000475235 MYBPC2Q14324 1141 aa13.03□□□□□ -0.32
HLA-DOB-208ENST00000475235 GPNMBQ14956 572 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms