RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 IKBKEQ14164 716 aa16.1■□□□□ 0.17
UPF3A-204ENST00000475218 GRIK4Q16099 956 aa16.1■□□□□ 0.17
UPF3A-204ENST00000475218 RPAINQ86UA6 219 aa16.1■□□□□ 0.17
UPF3A-204ENST00000475218 RASGRP4Q8TDF6 673 aa16.1■□□□□ 0.17
UPF3A-204ENST00000475218 TLL1O43897 1013 aa16.09■□□□□ 0.17
UPF3A-204ENST00000475218 ATG7O95352 703 aa16.09■□□□□ 0.17
UPF3A-204ENST00000475218 CYP3A4P08684 503 aa16.09■□□□□ 0.17
UPF3A-204ENST00000475218 IGFBP4P22692 258 aa16.09■□□□□ 0.17
UPF3A-204ENST00000475218 PPFIA1Q13136 1202 aa16.09■□□□□ 0.17
UPF3A-204ENST00000475218 KRT40Q6A162 431 aa16.09■□□□□ 0.17
UPF3A-204ENST00000475218 NIPA1Q7RTP0 329 aa16.09■□□□□ 0.17
UPF3A-204ENST00000475218 PPM1EQ8WY54 764 aa16.09■□□□□ 0.17
UPF3A-204ENST00000475218 UIMC1Q96RL1 719 aa16.09■□□□□ 0.17
UPF3A-204ENST00000475218 RNF26Q9BY78 433 aaPredicted RBP16.09■□□□□ 0.17
UPF3A-204ENST00000475218 TM6SF1Q9BZW5 370 aa16.09■□□□□ 0.17
UPF3A-204ENST00000475218 GLT8D2Q9H1C3 349 aa16.09■□□□□ 0.17
UPF3A-204ENST00000475218 SMARCAD1Q9H4L7 1026 aa16.09■□□□□ 0.17
UPF3A-204ENST00000475218 PRRC2BQ5JSZ5 2229 aaKnown RBP16.09■□□□□ 0.17
UPF3A-204ENST00000475218 IGKV6D-21A0A0A0MT36 114 aa16.08■□□□□ 0.17
UPF3A-204ENST00000475218 LPXNO60711 386 aa16.08■□□□□ 0.17
UPF3A-204ENST00000475218 NEFLP07196 543 aa16.08■□□□□ 0.17
UPF3A-204ENST00000475218 GNAT1P11488 350 aa16.08■□□□□ 0.17
UPF3A-204ENST00000475218 GLG1Q92896 1179 aa16.08■□□□□ 0.17
UPF3A-204ENST00000475218 LENG9Q96B70 501 aa16.08■□□□□ 0.17
UPF3A-204ENST00000475218 SLC26A6Q9BXS9 759 aa16.08■□□□□ 0.17
UPF3A-204ENST00000475218 PPP4R2Q9NY27 417 aa16.08■□□□□ 0.17
UPF3A-204ENST00000475218 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.08■□□□□ 0.16
UPF3A-204ENST00000475218 INSRRP14616 1297 aa16.08■□□□□ 0.16
UPF3A-204ENST00000475218 POU3F3P20264 500 aaPredicted RBP16.08■□□□□ 0.16
UPF3A-204ENST00000475218 PLCB4Q15147 1175 aa16.08■□□□□ 0.16
UPF3A-204ENST00000475218 CCDC85BQ15834 202 aaPredicted RBP16.08■□□□□ 0.16
UPF3A-204ENST00000475218 TRAPPC12Q8WVT3 735 aa16.08■□□□□ 0.16
UPF3A-204ENST00000475218 VPS54Q9P1Q0 977 aa16.08■□□□□ 0.16
UPF3A-204ENST00000475218 TUBE1Q9UJT0 475 aa16.08■□□□□ 0.16
UPF3A-204ENST00000475218 MTCH2Q9Y6C9 303 aa16.08■□□□□ 0.16
UPF3A-204ENST00000475218 EFCAB14O75071 495 aa16.07■□□□□ 0.16
UPF3A-204ENST00000475218 NPY5RQ15761 445 aa16.07■□□□□ 0.16
UPF3A-204ENST00000475218 FAM117BQ6P1L5 589 aa16.07■□□□□ 0.16
UPF3A-204ENST00000475218 ABHD15Q6UXT9 468 aa16.07■□□□□ 0.16
UPF3A-204ENST00000475218 PLA2G4DQ86XP0 818 aa16.07■□□□□ 0.16
UPF3A-204ENST00000475218 REXO1Q8N1G1 1221 aaKnown RBP16.07■□□□□ 0.16
UPF3A-204ENST00000475218 ARNTL2Q8WYA1 636 aa16.07■□□□□ 0.16
UPF3A-204ENST00000475218 RAD9AQ99638 391 aa16.07■□□□□ 0.16
UPF3A-204ENST00000475218 SDF4Q9BRK5 362 aa16.07■□□□□ 0.16
UPF3A-204ENST00000475218 CYP46A1Q9Y6A2 500 aa16.07■□□□□ 0.16
UPF3A-204ENST00000475218 LINC01553A4QN01 128 aa16.06■□□□□ 0.16
UPF3A-204ENST00000475218 KIF28PB7ZC32 967 aa16.06■□□□□ 0.16
UPF3A-204ENST00000475218 HTRA4P83105 476 aaPredicted RBP16.06■□□□□ 0.16
UPF3A-204ENST00000475218 PLPPR4Q7Z2D5 763 aa16.06■□□□□ 0.16
UPF3A-204ENST00000475218 DNAJB3Q8WWF6 145 aa16.06■□□□□ 0.16
UPF3A-204ENST00000475218 C6orf50Q9HD87 102 aa16.06■□□□□ 0.16
UPF3A-204ENST00000475218 TTC28Q96AY4 2481 aa16.06■□□□□ 0.16
UPF3A-204ENST00000475218 DDX39AO00148 427 aaKnown RBP16.05■□□□□ 0.16
UPF3A-204ENST00000475218 ATP4AP20648 1035 aa16.05■□□□□ 0.16
UPF3A-204ENST00000475218 CIITAP33076 1130 aa16.05■□□□□ 0.16
UPF3A-204ENST00000475218 IGBP1P78318 339 aa16.05■□□□□ 0.16
UPF3A-204ENST00000475218 LPIN1Q14693 890 aa16.05■□□□□ 0.16
UPF3A-204ENST00000475218 TAF2Q6P1X5 1199 aa16.05■□□□□ 0.16
UPF3A-204ENST00000475218 CCDC60Q8IWA6 550 aaPredicted RBP16.05■□□□□ 0.16
UPF3A-204ENST00000475218 SEPT8Q92599 483 aa16.05■□□□□ 0.16
UPF3A-204ENST00000475218 ZNF274Q96GC6 653 aaPredicted RBP16.05■□□□□ 0.16
UPF3A-204ENST00000475218 AIFM3Q96NN9 605 aa16.05■□□□□ 0.16
UPF3A-204ENST00000475218 COL4A6Q14031 1691 aa16.05■□□□□ 0.16
UPF3A-204ENST00000475218 WDR81Q562E7 1941 aa16.05■□□□□ 0.16
UPF3A-204ENST00000475218 LOXHD1Q8IVV2 1947 aa16.05■□□□□ 0.16
UPF3A-204ENST00000475218 ZBTB42B2RXF5 422 aa16.05■□□□□ 0.16
UPF3A-204ENST00000475218 M0R2N6 131 aa16.05■□□□□ 0.16
UPF3A-204ENST00000475218 IPO5O00410 1097 aaKnown RBP16.05■□□□□ 0.16
UPF3A-204ENST00000475218 DTNBO60941 627 aa16.05■□□□□ 0.16
UPF3A-204ENST00000475218 GHRP10912 638 aa16.05■□□□□ 0.16
UPF3A-204ENST00000475218 ZNF76P36508 570 aa16.05■□□□□ 0.16
UPF3A-204ENST00000475218 STAT5BP51692 787 aa16.05■□□□□ 0.16
UPF3A-204ENST00000475218 GRB10Q13322 594 aa16.05■□□□□ 0.16
UPF3A-204ENST00000475218 MYOCDQ8IZQ8 938 aa16.05■□□□□ 0.16
UPF3A-204ENST00000475218 SP7Q8TDD2 431 aaPredicted RBP16.05■□□□□ 0.16
UPF3A-204ENST00000475218 CCDC12Q8WUD4 166 aaPredicted RBP16.05■□□□□ 0.16
UPF3A-204ENST00000475218 ZBED2Q9BTP6 218 aa16.05■□□□□ 0.16
UPF3A-204ENST00000475218 IFIH1Q9BYX4 1025 aaKnown RBP16.05■□□□□ 0.16
UPF3A-204ENST00000475218 ERVK-21P61565 698 aa16.04■□□□□ 0.16
UPF3A-204ENST00000475218 TOP1MTQ969P6 601 aa16.04■□□□□ 0.16
UPF3A-204ENST00000475218 AGO3Q9H9G7 860 aaKnown RBP16.04■□□□□ 0.16
UPF3A-204ENST00000475218 CDY2AQ9Y6F7 541 aa16.04■□□□□ 0.16
UPF3A-204ENST00000475218 AMHP03971 560 aa16.03■□□□□ 0.16
UPF3A-204ENST00000475218 GNA11P29992 359 aa16.03■□□□□ 0.16
UPF3A-204ENST00000475218 STK3Q13188 491 aa16.03■□□□□ 0.16
UPF3A-204ENST00000475218 FBXO47Q5MNV8 452 aa16.03■□□□□ 0.16
UPF3A-204ENST00000475218 GDPD5Q8WTR4 605 aa16.03■□□□□ 0.16
UPF3A-204ENST00000475218 LINC01599Q8WXQ3 324 aa16.03■□□□□ 0.16
UPF3A-204ENST00000475218 AZI2Q9H6S1 392 aa16.03■□□□□ 0.16
UPF3A-204ENST00000475218 SUGCTQ9HAC7 445 aa16.03■□□□□ 0.16
UPF3A-204ENST00000475218 SH3GLB2Q9NR46 395 aa16.03■□□□□ 0.16
UPF3A-204ENST00000475218 PDRG1Q9NUG6 133 aa16.03■□□□□ 0.16
UPF3A-204ENST00000475218 TRPC6Q9Y210 931 aa16.03■□□□□ 0.16
UPF3A-204ENST00000475218 POTEB3A0JP26 581 aa16.03■□□□□ 0.16
UPF3A-204ENST00000475218 RRN3P2A6NIE6 340 aa16.03■□□□□ 0.16
UPF3A-204ENST00000475218 MRPS6P82932 125 aaKnown RBP16.03■□□□□ 0.16
UPF3A-204ENST00000475218 AKAP17AQ02040 695 aaKnown RBP16.03■□□□□ 0.16
UPF3A-204ENST00000475218 PRR16Q569H4 304 aa16.03■□□□□ 0.16
UPF3A-204ENST00000475218 ERICH6BQ5W0A0 696 aa16.03■□□□□ 0.16
UPF3A-204ENST00000475218 MCTP2Q6DN12 878 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms