RNA–Protein interactions for RNA: ENST00000474421.1

PDLIM4-206, Transcript of PDZ and LIM domain 4, humanhuman

TSL 3

Gene PDLIM4, Length 1,084 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-206ENST00000474421 ERVK-21P61565 698 aa23.22■■□□□ 1.31
PDLIM4-206ENST00000474421 FAM117BQ6P1L5 589 aa23.22■■□□□ 1.31
PDLIM4-206ENST00000474421 CYP2W1Q8TAV3 490 aa23.22■■□□□ 1.31
PDLIM4-206ENST00000474421 PGBD1Q96JS3 809 aa23.22■■□□□ 1.31
PDLIM4-206ENST00000474421 AGO4Q9HCK5 861 aaKnown RBP23.22■■□□□ 1.31
PDLIM4-206ENST00000474421 LMCD1Q9NZU5 365 aa23.22■■□□□ 1.31
PDLIM4-206ENST00000474421 LINC01553A4QN01 128 aa23.21■■□□□ 1.31
PDLIM4-206ENST00000474421 AKAP17AQ02040 695 aaKnown RBP23.21■■□□□ 1.31
PDLIM4-206ENST00000474421 GRB10Q13322 594 aa23.21■■□□□ 1.31
PDLIM4-206ENST00000474421 SKIV2LQ15477 1246 aaKnown RBP23.21■■□□□ 1.31
PDLIM4-206ENST00000474421 AAK1Q2M2I8 961 aa23.21■■□□□ 1.31
PDLIM4-206ENST00000474421 PLPPR4Q7Z2D5 763 aa23.21■■□□□ 1.31
PDLIM4-206ENST00000474421 AGXT2Q9BYV1 514 aa23.21■■□□□ 1.31
PDLIM4-206ENST00000474421 IFIH1Q9BYX4 1025 aaKnown RBP23.21■■□□□ 1.31
PDLIM4-206ENST00000474421 C6orf50Q9HD87 102 aa23.21■■□□□ 1.31
PDLIM4-206ENST00000474421 REV3LO60673 3130 aa23.21■■□□□ 1.31
PDLIM4-206ENST00000474421 SIP14410 1827 aa23.2■■□□□ 1.3
PDLIM4-206ENST00000474421 PRPF3O43395 683 aaKnown RBP23.2■■□□□ 1.3
PDLIM4-206ENST00000474421 ARP10275 920 aa23.2■■□□□ 1.3
PDLIM4-206ENST00000474421 ACTR2P61160 394 aa23.2■■□□□ 1.3
PDLIM4-206ENST00000474421 HTRA4P83105 476 aaPredicted RBP23.2■■□□□ 1.3
PDLIM4-206ENST00000474421 RUFY4Q6ZNE9 571 aa23.2■■□□□ 1.3
PDLIM4-206ENST00000474421 TOP1MTQ969P6 601 aa23.2■■□□□ 1.3
PDLIM4-206ENST00000474421 ZMYND12Q9H0C1 365 aa23.2■■□□□ 1.3
PDLIM4-206ENST00000474421 TMEM260Q9NX78 707 aa23.2■■□□□ 1.3
PDLIM4-206ENST00000474421 CHRNA1P02708 482 aa23.19■■□□□ 1.3
PDLIM4-206ENST00000474421 GNA11P29992 359 aa23.19■■□□□ 1.3
PDLIM4-206ENST00000474421 SLC26A2P50443 739 aa23.19■■□□□ 1.3
PDLIM4-206ENST00000474421 TRPC6Q9Y210 931 aa23.19■■□□□ 1.3
PDLIM4-206ENST00000474421 COL4A4P53420 1690 aaPredicted RBP23.19■■□□□ 1.3
PDLIM4-206ENST00000474421 LPXNO60711 386 aa23.18■■□□□ 1.3
PDLIM4-206ENST00000474421 NEFLP07196 543 aa23.18■■□□□ 1.3
PDLIM4-206ENST00000474421 CYP3A4P08684 503 aa23.18■■□□□ 1.3
PDLIM4-206ENST00000474421 INSRRP14616 1297 aa23.18■■□□□ 1.3
PDLIM4-206ENST00000474421 STAT5BP51692 787 aa23.18■■□□□ 1.3
PDLIM4-206ENST00000474421 ITGB3BPQ13352 177 aaPredicted RBP23.18■■□□□ 1.3
PDLIM4-206ENST00000474421 MARCH8Q5T0T0 291 aa23.18■■□□□ 1.3
PDLIM4-206ENST00000474421 JAKMIP3Q5VZ66 844 aa23.18■■□□□ 1.3
PDLIM4-206ENST00000474421 REXO1Q8N1G1 1221 aaKnown RBP23.18■■□□□ 1.3
PDLIM4-206ENST00000474421 BICD2Q8TD16 824 aa23.18■■□□□ 1.3
PDLIM4-206ENST00000474421 SP7Q8TDD2 431 aaPredicted RBP23.18■■□□□ 1.3
PDLIM4-206ENST00000474421 YME1L1Q96TA2 773 aa23.18■■□□□ 1.3
PDLIM4-206ENST00000474421 PCYT2Q99447 389 aa23.18■■□□□ 1.3
PDLIM4-206ENST00000474421 COG5Q9UP83 839 aa23.18■■□□□ 1.3
PDLIM4-206ENST00000474421 NCOR1O75376 2440 aa23.17■■□□□ 1.3
PDLIM4-206ENST00000474421 ATG7O95352 703 aa23.17■■□□□ 1.3
PDLIM4-206ENST00000474421 IGBP1P78318 339 aa23.17■■□□□ 1.3
PDLIM4-206ENST00000474421 MGAT3Q09327 533 aa23.17■■□□□ 1.3
PDLIM4-206ENST00000474421 SPRED2Q7Z698 418 aa23.17■■□□□ 1.3
PDLIM4-206ENST00000474421 PLA2G4DQ86XP0 818 aa23.17■■□□□ 1.3
PDLIM4-206ENST00000474421 GDPD5Q8WTR4 605 aa23.17■■□□□ 1.3
PDLIM4-206ENST00000474421 DNAJB3Q8WWF6 145 aa23.17■■□□□ 1.3
PDLIM4-206ENST00000474421 SAMD11Q96NU1 681 aa23.17■■□□□ 1.3
PDLIM4-206ENST00000474421 RNF26Q9BY78 433 aaPredicted RBP23.17■■□□□ 1.3
PDLIM4-206ENST00000474421 OSBPL7Q9BZF2 842 aa23.17■■□□□ 1.3
PDLIM4-206ENST00000474421 SUGCTQ9HAC7 445 aa23.17■■□□□ 1.3
PDLIM4-206ENST00000474421 MTUS1Q9ULD2 1270 aa23.17■■□□□ 1.3
PDLIM4-206ENST00000474421 LOC101059915A0A1B0GWI6 518 aaPredicted RBP23.16■■□□□ 1.3
PDLIM4-206ENST00000474421 GHRP10912 638 aa23.16■■□□□ 1.3
PDLIM4-206ENST00000474421 EVCP57679 992 aa23.16■■□□□ 1.3
PDLIM4-206ENST00000474421 SETQ01105 290 aaPredicted RBP23.16■■□□□ 1.3
PDLIM4-206ENST00000474421 PLCB4Q15147 1175 aa23.16■■□□□ 1.3
PDLIM4-206ENST00000474421 PKN1Q16512 942 aa23.16■■□□□ 1.3
PDLIM4-206ENST00000474421 IER5Q5VY09 327 aa23.16■■□□□ 1.3
PDLIM4-206ENST00000474421 FAM160B1Q5W0V3 765 aa23.16■■□□□ 1.3
PDLIM4-206ENST00000474421 KRT40Q6A162 431 aa23.16■■□□□ 1.3
PDLIM4-206ENST00000474421 CCDC148Q8NFR7 591 aa23.16■■□□□ 1.3
PDLIM4-206ENST00000474421 XIRP2A4UGR9 3374 aa23.15■■□□□ 1.3
PDLIM4-206ENST00000474421 POTEB3A0JP26 581 aa23.15■■□□□ 1.3
PDLIM4-206ENST00000474421 FAM86B1E9PN63 330 aa23.15■■□□□ 1.3
PDLIM4-206ENST00000474421 M0QZ92 97 aa23.15■■□□□ 1.3
PDLIM4-206ENST00000474421 TNFRSF10AO00220 468 aa23.15■■□□□ 1.3
PDLIM4-206ENST00000474421 UPP2O95045 317 aa23.15■■□□□ 1.3
PDLIM4-206ENST00000474421 FAM86B2P0C5J1 330 aa23.15■■□□□ 1.3
PDLIM4-206ENST00000474421 IFNAR1P17181 557 aa23.15■■□□□ 1.3
PDLIM4-206ENST00000474421 MRPS6P82932 125 aaKnown RBP23.15■■□□□ 1.3
PDLIM4-206ENST00000474421 LPIN1Q14693 890 aa23.15■■□□□ 1.3
PDLIM4-206ENST00000474421 POTEBQ6S5H4 581 aa23.15■■□□□ 1.3
PDLIM4-206ENST00000474421 RUFY3Q7L099 469 aa23.15■■□□□ 1.3
PDLIM4-206ENST00000474421 FBXO22Q8NEZ5 403 aa23.15■■□□□ 1.3
PDLIM4-206ENST00000474421 ADAMTS19Q8TE59 1207 aa23.15■■□□□ 1.3
PDLIM4-206ENST00000474421 CRYGNQ8WXF5 182 aa23.15■■□□□ 1.3
PDLIM4-206ENST00000474421 PCDHA2Q9Y5H9 948 aa23.15■■□□□ 1.3
PDLIM4-206ENST00000474421 CDY2AQ9Y6F7 541 aa23.15■■□□□ 1.3
PDLIM4-206ENST00000474421 SQORQ9Y6N5 450 aa23.15■■□□□ 1.3
PDLIM4-206ENST00000474421 COL4A6Q14031 1691 aa23.15■■□□□ 1.3
PDLIM4-206ENST00000474421 IGKV6D-21A0A0A0MT36 114 aa23.14■■□□□ 1.29
PDLIM4-206ENST00000474421 IPO5O00410 1097 aaKnown RBP23.14■■□□□ 1.29
PDLIM4-206ENST00000474421 BACH1O14867 736 aa23.14■■□□□ 1.29
PDLIM4-206ENST00000474421 NTRK3Q16288 839 aa23.14■■□□□ 1.29
PDLIM4-206ENST00000474421 FBXO47Q5MNV8 452 aa23.14■■□□□ 1.29
PDLIM4-206ENST00000474421 TSHZ1Q6ZSZ6 1077 aa23.14■■□□□ 1.29
PDLIM4-206ENST00000474421 PHKBQ93100 1093 aa23.14■■□□□ 1.29
PDLIM4-206ENST00000474421 SLC26A6Q9BXS9 759 aa23.14■■□□□ 1.29
PDLIM4-206ENST00000474421 FAM49AQ9H0Q0 323 aaPredicted RBP23.14■■□□□ 1.29
PDLIM4-206ENST00000474421 TBC1D22BQ9NU19 505 aa23.14■■□□□ 1.29
PDLIM4-206ENST00000474421 TCEAL9Q9UHQ7 104 aa23.14■■□□□ 1.29
PDLIM4-206ENST00000474421 CYP46A1Q9Y6A2 500 aa23.14■■□□□ 1.29
PDLIM4-206ENST00000474421 MUC3AQ02505 3323 aa23.13■■□□□ 1.29
PDLIM4-206ENST00000474421 IGLV3-22A0A075B6J6 115 aa23.13■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms