RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 ARP10275 920 aa21.47■■□□□ 1.03
CCDC88B-206ENST00000473405 ERVK-21P61565 698 aa21.47■■□□□ 1.03
CCDC88B-206ENST00000473405 TFF2Q03403 129 aa21.47■■□□□ 1.03
CCDC88B-206ENST00000473405 MGAT3Q09327 533 aa21.47■■□□□ 1.03
CCDC88B-206ENST00000473405 AP3B2Q13367 1082 aa21.47■■□□□ 1.03
CCDC88B-206ENST00000473405 PFKFB3Q16875 520 aaPredicted RBP21.47■■□□□ 1.03
CCDC88B-206ENST00000473405 TAF2Q6P1X5 1199 aa21.47■■□□□ 1.03
CCDC88B-206ENST00000473405 SP7Q8TDD2 431 aaPredicted RBP21.47■■□□□ 1.03
CCDC88B-206ENST00000473405 TGS1Q96RS0 853 aaKnown RBP21.47■■□□□ 1.03
CCDC88B-206ENST00000473405 SMARCAD1Q9H4L7 1026 aa21.47■■□□□ 1.03
CCDC88B-206ENST00000473405 NAP1L2Q9ULW6 460 aaPredicted RBP21.47■■□□□ 1.03
CCDC88B-206ENST00000473405 NFASCO94856 1347 aa21.47■■□□□ 1.03
CCDC88B-206ENST00000473405 ADAMTS3O15072 1205 aa21.46■■□□□ 1.03
CCDC88B-206ENST00000473405 ACTR2P61160 394 aa21.46■■□□□ 1.03
CCDC88B-206ENST00000473405 FGD1P98174 961 aa21.46■■□□□ 1.03
CCDC88B-206ENST00000473405 FBXL16Q8N461 479 aa21.46■■□□□ 1.03
CCDC88B-206ENST00000473405 CRYGNQ8WXF5 182 aa21.46■■□□□ 1.03
CCDC88B-206ENST00000473405 AGXT2Q9BYV1 514 aa21.46■■□□□ 1.03
CCDC88B-206ENST00000473405 IFIH1Q9BYX4 1025 aaKnown RBP21.46■■□□□ 1.03
CCDC88B-206ENST00000473405 GLT8D2Q9H1C3 349 aa21.46■■□□□ 1.03
CCDC88B-206ENST00000473405 TSPYL2Q9H2G4 693 aaPredicted RBP21.46■■□□□ 1.03
CCDC88B-206ENST00000473405 SUGCTQ9HAC7 445 aa21.46■■□□□ 1.03
CCDC88B-206ENST00000473405 AGO4Q9HCK5 861 aaKnown RBP21.46■■□□□ 1.03
CCDC88B-206ENST00000473405 INSL6Q9Y581 213 aa21.46■■□□□ 1.03
CCDC88B-206ENST00000473405 ATG2AQ2TAZ0 1938 aa21.46■■□□□ 1.03
CCDC88B-206ENST00000473405 WDR81Q562E7 1941 aa21.46■■□□□ 1.03
CCDC88B-206ENST00000473405 MEIS1O00470 390 aa21.45■■□□□ 1.02
CCDC88B-206ENST00000473405 SCG2P13521 617 aa21.45■■□□□ 1.02
CCDC88B-206ENST00000473405 RPS6KB1P23443 525 aa21.45■■□□□ 1.02
CCDC88B-206ENST00000473405 BLOC1S2Q6QNY1 142 aa21.45■■□□□ 1.02
CCDC88B-206ENST00000473405 ADAMTS19Q8TE59 1207 aa21.45■■□□□ 1.02
CCDC88B-206ENST00000473405 APBB2Q92870 758 aa21.45■■□□□ 1.02
CCDC88B-206ENST00000473405 TOP1MTQ969P6 601 aa21.45■■□□□ 1.02
CCDC88B-206ENST00000473405 ZBTB10Q96DT7 871 aa21.45■■□□□ 1.02
CCDC88B-206ENST00000473405 CCDC196A0A1B0GTZ2 297 aa21.44■■□□□ 1.02
CCDC88B-206ENST00000473405 ESYT2A0FGR8 921 aa21.44■■□□□ 1.02
CCDC88B-206ENST00000473405 GHRP10912 638 aa21.44■■□□□ 1.02
CCDC88B-206ENST00000473405 SKIV2LQ15477 1246 aaKnown RBP21.44■■□□□ 1.02
CCDC88B-206ENST00000473405 PKN1Q16512 942 aa21.44■■□□□ 1.02
CCDC88B-206ENST00000473405 NIPA1Q7RTP0 329 aa21.44■■□□□ 1.02
CCDC88B-206ENST00000473405 SDF4Q9BRK5 362 aa21.44■■□□□ 1.02
CCDC88B-206ENST00000473405 C17orf80Q9BSJ5 609 aa21.44■■□□□ 1.02
CCDC88B-206ENST00000473405 C5orf42Q9H799 3197 aa21.43■■□□□ 1.02
CCDC88B-206ENST00000473405 IGLV3-22A0A075B6J6 115 aa21.43■■□□□ 1.02
CCDC88B-206ENST00000473405 FAM86B1E9PN63 330 aa21.43■■□□□ 1.02
CCDC88B-206ENST00000473405 CCNE2O96020 404 aa21.43■■□□□ 1.02
CCDC88B-206ENST00000473405 FAM86B2P0C5J1 330 aa21.43■■□□□ 1.02
CCDC88B-206ENST00000473405 INSRRP14616 1297 aa21.43■■□□□ 1.02
CCDC88B-206ENST00000473405 IGBP1P78318 339 aa21.43■■□□□ 1.02
CCDC88B-206ENST00000473405 LPIN1Q14693 890 aa21.43■■□□□ 1.02
CCDC88B-206ENST00000473405 JAKMIP3Q5VZ66 844 aa21.43■■□□□ 1.02
CCDC88B-206ENST00000473405 DNAJB3Q8WWF6 145 aa21.43■■□□□ 1.02
CCDC88B-206ENST00000473405 ZMYND12Q9H0C1 365 aa21.43■■□□□ 1.02
CCDC88B-206ENST00000473405 AZI2Q9H6S1 392 aa21.43■■□□□ 1.02
CCDC88B-206ENST00000473405 LMCD1Q9NZU5 365 aa21.43■■□□□ 1.02
CCDC88B-206ENST00000473405 TTC3P53804 2025 aa21.43■■□□□ 1.02
CCDC88B-206ENST00000473405 TNFRSF10AO00220 468 aa21.42■■□□□ 1.02
CCDC88B-206ENST00000473405 REC8O95072 547 aa21.42■■□□□ 1.02
CCDC88B-206ENST00000473405 ATG7O95352 703 aa21.42■■□□□ 1.02
CCDC88B-206ENST00000473405 BMP1P13497 986 aa21.42■■□□□ 1.02
CCDC88B-206ENST00000473405 MYH9P35579 1960 aaKnown RBP21.42■■□□□ 1.02
CCDC88B-206ENST00000473405 KCNQ1P51787 676 aa21.42■■□□□ 1.02
CCDC88B-206ENST00000473405 PLCB4Q15147 1175 aa21.42■■□□□ 1.02
CCDC88B-206ENST00000473405 NTRK3Q16288 839 aa21.42■■□□□ 1.02
CCDC88B-206ENST00000473405 PHKBQ93100 1093 aa21.42■■□□□ 1.02
CCDC88B-206ENST00000473405 KIAA1671Q9BY89 1806 aa21.41■■□□□ 1.02
CCDC88B-206ENST00000473405 IGKV6D-21A0A0A0MT36 114 aa21.41■■□□□ 1.02
CCDC88B-206ENST00000473405 PRPF3O43395 683 aaKnown RBP21.41■■□□□ 1.02
CCDC88B-206ENST00000473405 UPP2O95045 317 aa21.41■■□□□ 1.02
CCDC88B-206ENST00000473405 FBXO47Q5MNV8 452 aa21.41■■□□□ 1.02
CCDC88B-206ENST00000473405 PLPPR4Q7Z2D5 763 aa21.41■■□□□ 1.02
CCDC88B-206ENST00000473405 RSPH3Q86UC2 560 aa21.41■■□□□ 1.02
CCDC88B-206ENST00000473405 TRAPPC12Q8WVT3 735 aa21.41■■□□□ 1.02
CCDC88B-206ENST00000473405 UHRF1Q96T88 793 aaPredicted RBP21.41■■□□□ 1.02
CCDC88B-206ENST00000473405 YME1L1Q96TA2 773 aa21.41■■□□□ 1.02
CCDC88B-206ENST00000473405 TRPC6Q9Y210 931 aa21.41■■□□□ 1.02
CCDC88B-206ENST00000473405 CDY2AQ9Y6F7 541 aa21.41■■□□□ 1.02
CCDC88B-206ENST00000473405 RRN3P2A6NIE6 340 aa21.4■■□□□ 1.02
CCDC88B-206ENST00000473405 DHX15O43143 795 aaKnown RBP21.4■■□□□ 1.02
CCDC88B-206ENST00000473405 CYP3A4P08684 503 aa21.4■■□□□ 1.02
CCDC88B-206ENST00000473405 STAT5BP51692 787 aa21.4■■□□□ 1.02
CCDC88B-206ENST00000473405 EVCP57679 992 aa21.4■■□□□ 1.02
CCDC88B-206ENST00000473405 MRPS6P82932 125 aaKnown RBP21.4■■□□□ 1.02
CCDC88B-206ENST00000473405 REXO1Q8N1G1 1221 aaKnown RBP21.4■■□□□ 1.02
CCDC88B-206ENST00000473405 FBXO22Q8NEZ5 403 aa21.4■■□□□ 1.02
CCDC88B-206ENST00000473405 FAM49AQ9H0Q0 323 aaPredicted RBP21.4■■□□□ 1.02
CCDC88B-206ENST00000473405 COG5Q9UP83 839 aa21.4■■□□□ 1.02
CCDC88B-206ENST00000473405 EVPLQ92817 2033 aa21.39■■□□□ 1.02
CCDC88B-206ENST00000473405 DDX39AO00148 427 aaKnown RBP21.39■■□□□ 1.01
CCDC88B-206ENST00000473405 PPFIA3O75145 1194 aa21.39■■□□□ 1.01
CCDC88B-206ENST00000473405 ZNF76P36508 570 aa21.39■■□□□ 1.01
CCDC88B-206ENST00000473405 AAK1Q2M2I8 961 aa21.39■■□□□ 1.01
CCDC88B-206ENST00000473405 EPC2Q52LR7 807 aa21.39■■□□□ 1.01
CCDC88B-206ENST00000473405 ABHD15Q6UXT9 468 aa21.39■■□□□ 1.01
CCDC88B-206ENST00000473405 TSHZ1Q6ZSZ6 1077 aa21.39■■□□□ 1.01
CCDC88B-206ENST00000473405 PLA2G4DQ86XP0 818 aa21.39■■□□□ 1.01
CCDC88B-206ENST00000473405 CCDC60Q8IWA6 550 aaPredicted RBP21.39■■□□□ 1.01
CCDC88B-206ENST00000473405 IL27Q8NEV9 243 aa21.39■■□□□ 1.01
CCDC88B-206ENST00000473405 NECAB3Q96P71 396 aaPredicted RBP21.39■■□□□ 1.01
CCDC88B-206ENST00000473405 AGO3Q9H9G7 860 aaKnown RBP21.39■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms