RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	MYOCOS	A0A1B0GUC4	107 aa		5.29	□□□□□ -1.56
PTCD3-209	ENST00000472044	ASGR2	P07307	311 aa		5.29	□□□□□ -1.56
PTCD3-209	ENST00000472044	NCAM1	P13591	858 aa		5.29	□□□□□ -1.56
PTCD3-209	ENST00000472044	SESN3	P58005	492 aa		5.29	□□□□□ -1.56
PTCD3-209	ENST00000472044	SRSF3	P84103	164 aa	Known RBP	5.29	□□□□□ -1.56
PTCD3-209	ENST00000472044	TMPRSS15	P98073	1019 aa		5.29	□□□□□ -1.56
PTCD3-209	ENST00000472044	EPHA7	Q15375	998 aa		5.29	□□□□□ -1.56
PTCD3-209	ENST00000472044	TERF2	Q15554	542 aa		5.29	□□□□□ -1.56
PTCD3-209	ENST00000472044	CR1L	Q2VPA4	569 aa		5.29	□□□□□ -1.56
PTCD3-209	ENST00000472044	BRDT	Q58F21	947 aa	Predicted RBP	5.29	□□□□□ -1.56
PTCD3-209	ENST00000472044	CATSPERE	Q5SY80	951 aa		5.29	□□□□□ -1.56
PTCD3-209	ENST00000472044	ZNF605	Q86T29	641 aa		5.29	□□□□□ -1.56
PTCD3-209	ENST00000472044	FERMT3	Q86UX7	667 aa		5.29	□□□□□ -1.56
PTCD3-209	ENST00000472044	ZNF610	Q8N9Z0	462 aa		5.29	□□□□□ -1.56
PTCD3-209	ENST00000472044	SLC5A5	Q92911	643 aa		5.29	□□□□□ -1.56
PTCD3-209	ENST00000472044	FAM120A	Q9NZB2	1118 aa	Known RBP eCLIP	5.29	□□□□□ -1.56
PTCD3-209	ENST00000472044	TEX51	A0A1B0GUA7	166 aa		5.28	□□□□□ -1.56
PTCD3-209	ENST00000472044	RASSF10	A6NK89	507 aa		5.28	□□□□□ -1.56
PTCD3-209	ENST00000472044	FOXP2	O15409	715 aa		5.28	□□□□□ -1.56
PTCD3-209	ENST00000472044	TAL1	P17542	331 aa	Predicted RBP	5.28	□□□□□ -1.56
PTCD3-209	ENST00000472044	LSP1	P33241	339 aa		5.28	□□□□□ -1.56
PTCD3-209	ENST00000472044	ZNF200	P98182	395 aa	Predicted RBP	5.28	□□□□□ -1.56
PTCD3-209	ENST00000472044	GRIN1	Q05586	938 aa		5.28	□□□□□ -1.56
PTCD3-209	ENST00000472044	CACNB2	Q08289	660 aa	Predicted RBP	5.28	□□□□□ -1.56
PTCD3-209	ENST00000472044	DBP	Q10586	325 aa	Predicted RBP	5.28	□□□□□ -1.56
PTCD3-209	ENST00000472044	TMEM132B	Q14DG7	1078 aa		5.28	□□□□□ -1.56
PTCD3-209	ENST00000472044	TARBP2	Q15633	366 aa	Known RBP	5.28	□□□□□ -1.56
PTCD3-209	ENST00000472044	DDB1	Q16531	1140 aa		5.28	□□□□□ -1.56
PTCD3-209	ENST00000472044	TEPP	Q6URK8	271 aa		5.28	□□□□□ -1.56
PTCD3-209	ENST00000472044	PRR23B	Q6ZRT6	265 aa		5.28	□□□□□ -1.56
PTCD3-209	ENST00000472044	RASSF3	Q86WH2	238 aa		5.28	□□□□□ -1.56
PTCD3-209	ENST00000472044	LDHD	Q86WU2	507 aa		5.28	□□□□□ -1.56
PTCD3-209	ENST00000472044	NME9	Q86XW9	330 aa		5.28	□□□□□ -1.56
PTCD3-209	ENST00000472044	MENT	Q9BUN1	341 aa		5.28	□□□□□ -1.56
PTCD3-209	ENST00000472044	MCOLN1	Q9GZU1	580 aa		5.28	□□□□□ -1.56
PTCD3-209	ENST00000472044	EPB41L4B	Q9H329	900 aa		5.28	□□□□□ -1.56
PTCD3-209	ENST00000472044	ZMAT4	Q9H898	229 aa		5.28	□□□□□ -1.56
PTCD3-209	ENST00000472044	CNTD2	Q9H8S5	307 aa		5.28	□□□□□ -1.56
PTCD3-209	ENST00000472044	DCP1A	Q9NPI6	582 aa	Predicted RBP	5.28	□□□□□ -1.56
PTCD3-209	ENST00000472044	SIRT5	Q9NXA8	310 aa		5.28	□□□□□ -1.56
PTCD3-209	ENST00000472044	MBD1	Q9UIS9	605 aa	Predicted RBP	5.28	□□□□□ -1.56
PTCD3-209	ENST00000472044	PLA2G2D	Q9UNK4	145 aa		5.28	□□□□□ -1.56
PTCD3-209	ENST00000472044	ASB1	Q9Y576	335 aa		5.28	□□□□□ -1.56
PTCD3-209	ENST00000472044	LOC107983988	A0A1B0GUW6	1196 aa	Predicted RBP	5.27	□□□□□ -1.57
PTCD3-209	ENST00000472044	GOLGA6L22	H0YM25	854 aa		5.27	□□□□□ -1.57
PTCD3-209	ENST00000472044	RAB11FIP3	O75154	756 aa		5.27	□□□□□ -1.57
PTCD3-209	ENST00000472044	SEMA7A	O75326	666 aa		5.27	□□□□□ -1.57
PTCD3-209	ENST00000472044	CD40	P25942	277 aa		5.27	□□□□□ -1.57
PTCD3-209	ENST00000472044	PTX3	P26022	381 aa	Predicted RBP	5.27	□□□□□ -1.57
PTCD3-209	ENST00000472044	AOAH	P28039	575 aa		5.27	□□□□□ -1.57
PTCD3-209	ENST00000472044	NKX3-2	P78367	333 aa		5.27	□□□□□ -1.57
PTCD3-209	ENST00000472044	ADCY1	Q08828	1119 aa		5.27	□□□□□ -1.57
PTCD3-209	ENST00000472044	MTMR1	Q13613	665 aa		5.27	□□□□□ -1.57
PTCD3-209	ENST00000472044	PLEKHG6	Q3KR16	790 aa		5.27	□□□□□ -1.57
PTCD3-209	ENST00000472044	BROX	Q5VW32	411 aa		5.27	□□□□□ -1.57
PTCD3-209	ENST00000472044	CD276	Q5ZPR3	534 aa		5.27	□□□□□ -1.57
PTCD3-209	ENST00000472044	IQSEC1	Q6DN90	963 aa		5.27	□□□□□ -1.57
PTCD3-209	ENST00000472044	ZC3H18	Q86VM9	953 aa	Known RBP	5.27	□□□□□ -1.57
PTCD3-209	ENST00000472044	PROSER1	Q86XN7	944 aa		5.27	□□□□□ -1.57
PTCD3-209	ENST00000472044	CLRN3	Q8NCR9	226 aa		5.27	□□□□□ -1.57
PTCD3-209	ENST00000472044	ASB15	Q8WXK1	588 aa		5.27	□□□□□ -1.57
PTCD3-209	ENST00000472044	YIPF4	Q9BSR8	244 aa		5.27	□□□□□ -1.57
PTCD3-209	ENST00000472044	TRIM8	Q9BZR9	551 aa		5.27	□□□□□ -1.57
PTCD3-209	ENST00000472044	IRF2BPL	Q9H1B7	796 aa		5.27	□□□□□ -1.57
PTCD3-209	ENST00000472044	NSUN3	Q9H649	340 aa	Known RBP	5.27	□□□□□ -1.57
PTCD3-209	ENST00000472044	BCAS3	Q9H6U6	928 aa		5.27	□□□□□ -1.57
PTCD3-209	ENST00000472044	PCDH18	Q9HCL0	1135 aa		5.27	□□□□□ -1.57
PTCD3-209	ENST00000472044	TOMM22	Q9NS69	142 aa		5.27	□□□□□ -1.57
PTCD3-209	ENST00000472044	BTBD7	Q9P203	1132 aa		5.27	□□□□□ -1.57
PTCD3-209	ENST00000472044	USP36	Q9P275	1121 aa	Known RBP	5.27	□□□□□ -1.57
PTCD3-209	ENST00000472044	PCDHA5	Q9Y5H7	936 aa		5.27	□□□□□ -1.57
PTCD3-209	ENST00000472044	PRAMEF25	A6NGN4	478 aa		5.26	□□□□□ -1.57
PTCD3-209	ENST00000472044	PRKD3	O94806	890 aa		5.26	□□□□□ -1.57
PTCD3-209	ENST00000472044	ENO2	P09104	434 aa	Predicted RBP	5.26	□□□□□ -1.57
PTCD3-209	ENST00000472044	IGFBP6	P24592	240 aa	Predicted RBP	5.26	□□□□□ -1.57
PTCD3-209	ENST00000472044	CDR1	P51861	262 aa		5.26	□□□□□ -1.57
PTCD3-209	ENST00000472044	ERVK-21	P61565	698 aa		5.26	□□□□□ -1.57
PTCD3-209	ENST00000472044	FAM50A	Q14320	339 aa	Known RBP	5.26	□□□□□ -1.57
PTCD3-209	ENST00000472044	RGL3	Q3MIN7	710 aa		5.26	□□□□□ -1.57
PTCD3-209	ENST00000472044	ESRP1	Q6NXG1	681 aa	Known RBP	5.26	□□□□□ -1.57
PTCD3-209	ENST00000472044	RTN4RL1	Q86UN2	441 aa	Predicted RBP	5.26	□□□□□ -1.57
PTCD3-209	ENST00000472044	CNTD1	Q8N815	330 aa		5.26	□□□□□ -1.57
PTCD3-209	ENST00000472044	E2F7	Q96AV8	911 aa		5.26	□□□□□ -1.57
PTCD3-209	ENST00000472044	FOXRED1	Q96CU9	486 aa	Predicted RBP	5.26	□□□□□ -1.57
PTCD3-209	ENST00000472044	GBP4	Q96PP9	640 aa		5.26	□□□□□ -1.57
PTCD3-209	ENST00000472044	DIRC2	Q96SL1	478 aa		5.26	□□□□□ -1.57
PTCD3-209	ENST00000472044	ASPSCR1	Q9BZE9	553 aa		5.26	□□□□□ -1.57
PTCD3-209	ENST00000472044	ZDHHC5	Q9C0B5	715 aa		5.26	□□□□□ -1.57
PTCD3-209	ENST00000472044	METTL14	Q9HCE5	456 aa	Known RBP	5.26	□□□□□ -1.57
PTCD3-209	ENST00000472044	LRRC10B	A6NIK2	292 aa		5.25	□□□□□ -1.57
PTCD3-209	ENST00000472044	N4BP3	O15049	544 aa		5.25	□□□□□ -1.57
PTCD3-209	ENST00000472044	KATNA1	O75449	491 aa		5.25	□□□□□ -1.57
PTCD3-209	ENST00000472044	C8B	P07358	591 aa		5.25	□□□□□ -1.57
PTCD3-209	ENST00000472044	MME	P08473	750 aa		5.25	□□□□□ -1.57
PTCD3-209	ENST00000472044	ATF2	P15336	505 aa		5.25	□□□□□ -1.57
PTCD3-209	ENST00000472044	PFKL	P17858	780 aa		5.25	□□□□□ -1.57
PTCD3-209	ENST00000472044	STAT5A	P42229	794 aa		5.25	□□□□□ -1.57
PTCD3-209	ENST00000472044	MLANA	Q16655	118 aa		5.25	□□□□□ -1.57
PTCD3-209	ENST00000472044	CD300LD	Q6UXZ3	194 aa		5.25	□□□□□ -1.57
PTCD3-209	ENST00000472044	FRMD7	Q6ZUT3	714 aa		5.25	□□□□□ -1.57

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