RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 STYK1Q6J9G0 422 aa15.1■□□□□ 0.01
CCDC88A-211ENST00000471947 GADL1Q6ZQY3 521 aa15.1■□□□□ 0.01
CCDC88A-211ENST00000471947 DHX37Q8IY37 1157 aaKnown RBP15.1■□□□□ 0.01
CCDC88A-211ENST00000471947 PPP1R13LQ8WUF5 828 aa15.1■□□□□ 0.01
CCDC88A-211ENST00000471947 SAAL1Q96ER3 474 aa15.1■□□□□ 0.01
CCDC88A-211ENST00000471947 HACL1Q9UJ83 578 aa15.1■□□□□ 0.01
CCDC88A-211ENST00000471947 BMS1Q14692 1282 aaKnown RBP15.1■□□□□ 0.01
CCDC88A-211ENST00000471947 ASIC2Q16515 512 aa15.1■□□□□ 0.01
CCDC88A-211ENST00000471947 CCDC70Q6NSX1 233 aa15.1■□□□□ 0.01
CCDC88A-211ENST00000471947 VPS18Q9P253 973 aa15.1■□□□□ 0.01
CCDC88A-211ENST00000471947 MYO1AQ9UBC5 1043 aa15.1■□□□□ 0.01
CCDC88A-211ENST00000471947 CDC23Q9UJX2 597 aa15.1■□□□□ 0.01
CCDC88A-211ENST00000471947 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.1■□□□□ 0.01
CCDC88A-211ENST00000471947 BTAF1O14981 1849 aa15.1■□□□□ 0.01
CCDC88A-211ENST00000471947 CACNA1SQ13698 1873 aa15.1■□□□□ 0.01
CCDC88A-211ENST00000471947 SLC16A4O15374 487 aa15.1■□□□□ 0.01
CCDC88A-211ENST00000471947 ZBED6P86452 979 aa15.1■□□□□ 0.01
CCDC88A-211ENST00000471947 BAATQ14032 418 aaPredicted RBP15.1■□□□□ 0.01
CCDC88A-211ENST00000471947 SLC9C1Q4G0N8 1177 aa15.1■□□□□ 0.01
CCDC88A-211ENST00000471947 GOLGA6L1Q8N7Z2 621 aa15.1■□□□□ 0.01
CCDC88A-211ENST00000471947 FAM151AQ8WW52 585 aa15.1■□□□□ 0.01
CCDC88A-211ENST00000471947 SUGT1Q9Y2Z0 365 aa15.1■□□□□ 0.01
CCDC88A-211ENST00000471947 KDM3AQ9Y4C1 1321 aa15.09■□□□□ 0.01
CCDC88A-211ENST00000471947 KCNB1Q14721 858 aa15.09■□□□□ 0.01
CCDC88A-211ENST00000471947 EXOC3L4Q17RC7 722 aa15.09■□□□□ 0.01
CCDC88A-211ENST00000471947 SNRNP48Q6IEG0 339 aaKnown RBP15.09■□□□□ 0.01
CCDC88A-211ENST00000471947 TAF4BQ92750 862 aa15.09■□□□□ 0.01
CCDC88A-211ENST00000471947 PACSIN1Q9BY11 444 aa15.09■□□□□ 0.01
CCDC88A-211ENST00000471947 VCPKMTQ9H867 229 aa15.09■□□□□ 0.01
CCDC88A-211ENST00000471947 KIF20AO95235 890 aa15.09■□□□□ 0.01
CCDC88A-211ENST00000471947 GCFC2P16383 781 aaKnown RBP15.09■□□□□ 0.01
CCDC88A-211ENST00000471947 GCLMP48507 274 aa15.09■□□□□ 0.01
CCDC88A-211ENST00000471947 CEP55Q53EZ4 464 aa15.09■□□□□ 0.01
CCDC88A-211ENST00000471947 MUM1L1Q5H9M0 696 aa15.09■□□□□ 0.01
CCDC88A-211ENST00000471947 TTC19Q6DKK2 380 aaPredicted RBP15.09■□□□□ 0.01
CCDC88A-211ENST00000471947 SCFD1Q8WVM8 642 aa15.09■□□□□ 0.01
CCDC88A-211ENST00000471947 TEKT3Q9BXF9 490 aa15.09■□□□□ 0.01
CCDC88A-211ENST00000471947 PAFAH1B1P43034 410 aa15.09■□□□□ 0.01
CCDC88A-211ENST00000471947 NCAPG2Q86XI2 1143 aa15.09■□□□□ 0.01
CCDC88A-211ENST00000471947 ALS2CR12Q96Q35 445 aa15.09■□□□□ 0.01
CCDC88A-211ENST00000471947 MMS19Q96T76 1030 aa15.09■□□□□ 0.01
CCDC88A-211ENST00000471947 CUEDC2Q9H467 287 aa15.09■□□□□ 0.01
CCDC88A-211ENST00000471947 GCNT4Q9P109 453 aa15.09■□□□□ 0.01
CCDC88A-211ENST00000471947 CALCAP01258 141 aa15.08■□□□□ 0.01
CCDC88A-211ENST00000471947 CAP2P40123 477 aa15.08■□□□□ 0.01
CCDC88A-211ENST00000471947 RPS6P62753 249 aaKnown RBP15.08■□□□□ 0.01
CCDC88A-211ENST00000471947 MOB2Q70IA6 237 aa15.08■□□□□ 0.01
CCDC88A-211ENST00000471947 CNKSR2Q8WXI2 1034 aa15.08■□□□□ 0.01
CCDC88A-211ENST00000471947 WNK4Q96J92 1243 aa15.08■□□□□ 0.01
CCDC88A-211ENST00000471947 WDR18Q9BV38 432 aa15.08■□□□□ 0.01
CCDC88A-211ENST00000471947 GGA3Q9NZ52 723 aa15.08■□□□□ 0.01
CCDC88A-211ENST00000471947 ZBED4O75132 1171 aa15.08■□□□□ 0
CCDC88A-211ENST00000471947 ANKRD35Q8N283 1001 aa15.08■□□□□ 0
CCDC88A-211ENST00000471947 GUF1Q8N442 669 aaKnown RBP15.08■□□□□ 0
CCDC88A-211ENST00000471947 EHMT1Q9H9B1 1298 aa15.08■□□□□ 0
CCDC88A-211ENST00000471947 FRMD4BQ9Y2L6 1034 aa15.08■□□□□ 0
CCDC88A-211ENST00000471947 PCDHA13Q9Y5I0 950 aa15.08■□□□□ 0
CCDC88A-211ENST00000471947 CAPN6Q9Y6Q1 641 aa15.08■□□□□ 0
CCDC88A-211ENST00000471947 TADA3O75528 432 aa15.08■□□□□ 0
CCDC88A-211ENST00000471947 FXR2P51116 673 aaKnown RBP eCLIP15.08■□□□□ 01e-7■□□□□ 11
CCDC88A-211ENST00000471947 GUCY2FP51841 1108 aa15.08■□□□□ 0
CCDC88A-211ENST00000471947 TRIM14Q14142 442 aa15.08■□□□□ 0
CCDC88A-211ENST00000471947 MTERF2Q49AM1 385 aa15.08■□□□□ 0
CCDC88A-211ENST00000471947 SEZ6Q53EL9 994 aa15.08■□□□□ 0
CCDC88A-211ENST00000471947 FAM186BQ8IYM0 893 aa15.08■□□□□ 0
CCDC88A-211ENST00000471947 PPM1KQ8N3J5 372 aa15.08■□□□□ 0
CCDC88A-211ENST00000471947 CEP89Q96ST8 783 aa15.08■□□□□ 0
CCDC88A-211ENST00000471947 BCCIPQ9P287 314 aaKnown RBP eCLIP15.08■□□□□ 0
CCDC88A-211ENST00000471947 PHLPP2Q6ZVD8 1323 aa15.08■□□□□ 0
CCDC88A-211ENST00000471947 CTIFO43310 598 aaKnown RBP15.07■□□□□ 0
CCDC88A-211ENST00000471947 CEP104O60308 925 aa15.07■□□□□ 0
CCDC88A-211ENST00000471947 FOSP01100 380 aaPredicted RBP15.07■□□□□ 0
CCDC88A-211ENST00000471947 NR3C1P04150 777 aa15.07■□□□□ 0
CCDC88A-211ENST00000471947 OSTNP61366 133 aa15.07■□□□□ 0
CCDC88A-211ENST00000471947 MTMR1Q13613 665 aa15.07■□□□□ 0
CCDC88A-211ENST00000471947 NAA15Q9BXJ9 866 aaKnown RBP15.07■□□□□ 0
CCDC88A-211ENST00000471947 SH2D4AQ9H788 454 aa15.07■□□□□ 0
CCDC88A-211ENST00000471947 PDE11AQ9HCR9 933 aa15.07■□□□□ 0
CCDC88A-211ENST00000471947 ABCB6Q9NP58 842 aa15.07■□□□□ 0
CCDC88A-211ENST00000471947 ACP6Q9NPH0 428 aa15.07■□□□□ 0
CCDC88A-211ENST00000471947 MYH6P13533 1939 aa15.07■□□□□ 0
CCDC88A-211ENST00000471947 HERVK_113P62684 666 aa15.07■□□□□ 0
CCDC88A-211ENST00000471947 NLRX1Q86UT6 975 aa15.07■□□□□ 0
CCDC88A-211ENST00000471947 CDR2LQ86X02 465 aaPredicted RBP15.07■□□□□ 0
CCDC88A-211ENST00000471947 IDI2Q9BXS1 227 aa15.07■□□□□ 0
CCDC88A-211ENST00000471947 UNC45AQ9H3U1 944 aa15.07■□□□□ 0
CCDC88A-211ENST00000471947 KCNH7Q9NS40 1196 aa15.07■□□□□ 0
CCDC88A-211ENST00000471947 RNF146Q9NTX7 359 aa15.07■□□□□ 0
CCDC88A-211ENST00000471947 FHOD1Q9Y613 1164 aa15.07■□□□□ 0
CCDC88A-211ENST00000471947 PAPPAQ13219 1627 aa15.07■□□□□ 0
CCDC88A-211ENST00000471947 ERLIN1O75477 346 aa15.07■□□□□ 0
CCDC88A-211ENST00000471947 KRT13P13646 458 aa15.07■□□□□ 0
CCDC88A-211ENST00000471947 KRT5P13647 590 aa15.07■□□□□ 0
CCDC88A-211ENST00000471947 OAS2P29728 719 aaKnown RBP15.07■□□□□ 0
CCDC88A-211ENST00000471947 PDIA5Q14554 519 aa15.07■□□□□ 0
CCDC88A-211ENST00000471947 C2CD6Q53TS8 623 aa15.07■□□□□ 0
CCDC88A-211ENST00000471947 WDR59Q6PJI9 974 aa15.07■□□□□ 0
CCDC88A-211ENST00000471947 RNF207Q6ZRF8 634 aa15.07■□□□□ 0
CCDC88A-211ENST00000471947 SRGAP1Q7Z6B7 1085 aa15.07■□□□□ 0
CCDC88A-211ENST00000471947 CEP112Q8N8E3 955 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms