RNA–Protein interactions for RNA: ENST00000470167.1

COL3A1-205, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 628 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-205ENST00000470167 TSPAN6O43657 245 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 RNGTTO60942 597 aaKnown RBP5.63□□□□□ -1.51
COL3A1-205ENST00000470167 DAB1O75553 588 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 CSPG5O95196 566 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 CAPNS1P04632 268 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 ZSCAN22P10073 491 aaPredicted RBP5.63□□□□□ -1.51
COL3A1-205ENST00000470167 XRCC5P13010 732 aaKnown RBP5.63□□□□□ -1.51
COL3A1-205ENST00000470167 SCG2P13521 617 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 PCSK2P16519 638 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 POLR2EP19388 210 aaKnown RBP5.63□□□□□ -1.51
COL3A1-205ENST00000470167 S100A1P23297 94 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 ASMTP46597 345 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 STT3AP46977 705 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 SARSP49591 514 aaKnown RBP5.63□□□□□ -1.51
COL3A1-205ENST00000470167 GPC3P51654 580 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 MRPS35P82673 323 aaKnown RBP5.63□□□□□ -1.51
COL3A1-205ENST00000470167 CD83Q01151 205 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 ORC1Q13415 861 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 MSLNQ13421 630 aaPredicted RBP5.63□□□□□ -1.51
COL3A1-205ENST00000470167 NFE2L1Q14494 772 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 HLTFQ14527 1009 aaKnown RBP eCLIP5.63□□□□□ -1.51
COL3A1-205ENST00000470167 PUM3Q15397 648 aaKnown RBP5.63□□□□□ -1.51
COL3A1-205ENST00000470167 NFE2Q16621 373 aaPredicted RBP5.63□□□□□ -1.51
COL3A1-205ENST00000470167 KLHL40Q2TBA0 621 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 DACT2Q5SW24 774 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 CCDC183Q5T5S1 534 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 C8orf74Q6P047 294 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 MIS18BP1Q6P0N0 1132 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 TMEM53Q6P2H8 277 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 CRTC1Q6UUV9 634 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 ZNF600Q6ZNG1 722 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 ATG9AQ7Z3C6 839 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 BTLAQ7Z6A9 289 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 SPATA24Q86W54 205 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 SLC44A2Q8IWA5 706 aaPredicted RBP5.63□□□□□ -1.51
COL3A1-205ENST00000470167 ITPRIPQ8IWB1 547 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 REXO1L1PQ8IX06 675 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 CKAP2LQ8IYA6 745 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 SYCP3Q8IZU3 236 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 SPICE1Q8N0Z3 855 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 TMEM87AQ8NBN3 555 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 SMARCC2Q8TAQ2 1214 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 OSBP2Q969R2 916 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 HOOK2Q96ED9 719 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 TRMT2BQ96GJ1 504 aaKnown RBP5.63□□□□□ -1.51
COL3A1-205ENST00000470167 FAM161BQ96MY7 647 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 MTMR9Q96QG7 549 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 AP1M1Q9BXS5 423 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 AGXT2Q9BYV1 514 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 RUBCNLQ9H714 662 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 NDFIP2Q9NV92 336 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 C9orf78Q9NZ63 289 aaPredicted RBP5.63□□□□□ -1.51
COL3A1-205ENST00000470167 CNTN3Q9P232 1028 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 ATXN10Q9UBB4 475 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 HECAQ9UBI9 543 aaPredicted RBP5.63□□□□□ -1.51
COL3A1-205ENST00000470167 TTC7AQ9ULT0 858 aaPredicted RBP5.63□□□□□ -1.51
COL3A1-205ENST00000470167 SCAF8Q9UPN6 1271 aaKnown RBP5.63□□□□□ -1.51
COL3A1-205ENST00000470167 SATB2Q9UPW6 733 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 SH3TC1Q8TE82 1336 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 KTN1Q86UP2 1357 aaKnown RBP5.63□□□□□ -1.51
COL3A1-205ENST00000470167 ABCC11Q96J66 1382 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 MYOM3Q5VTT5 1437 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 CYP2D7A0A087X1C5 515 aa5.62□□□□□ -1.51
COL3A1-205ENST00000470167 A0A1W2PNR3 127 aa5.62□□□□□ -1.51
COL3A1-205ENST00000470167 HTR3EA5X5Y0 456 aa5.62□□□□□ -1.51
COL3A1-205ENST00000470167 E9PMD0 336 aa5.62□□□□□ -1.51
COL3A1-205ENST00000470167 RTCAO00442 366 aaKnown RBP5.62□□□□□ -1.51
COL3A1-205ENST00000470167 HAT1O14929 419 aa5.62□□□□□ -1.51
COL3A1-205ENST00000470167 FBXO21O94952 628 aa5.62□□□□□ -1.51
COL3A1-205ENST00000470167 RHOBTB3O94955 611 aa5.62□□□□□ -1.51
COL3A1-205ENST00000470167 BAG2O95816 211 aa5.62□□□□□ -1.51
COL3A1-205ENST00000470167 ALDH2P05091 517 aa5.62□□□□□ -1.51
COL3A1-205ENST00000470167 EPB41P11171 864 aaKnown RBP5.62□□□□□ -1.51
COL3A1-205ENST00000470167 PCNAP12004 261 aa5.62□□□□□ -1.51
COL3A1-205ENST00000470167 SLC5A1P13866 664 aa5.62□□□□□ -1.51
COL3A1-205ENST00000470167 GBP2P32456 591 aaPredicted RBP5.62□□□□□ -1.51
COL3A1-205ENST00000470167 PSMC4P43686 418 aa5.62□□□□□ -1.51
COL3A1-205ENST00000470167 HAAOP46952 286 aa5.62□□□□□ -1.51
COL3A1-205ENST00000470167 SMCPP49901 116 aaPredicted RBP5.62□□□□□ -1.51
COL3A1-205ENST00000470167 ARSDP51689 593 aa5.62□□□□□ -1.51
COL3A1-205ENST00000470167 BLVRAP53004 296 aa5.62□□□□□ -1.51
COL3A1-205ENST00000470167 ATP2B2Q01814 1243 aa5.62□□□□□ -1.51
COL3A1-205ENST00000470167 AKAP17AQ02040 695 aaKnown RBP5.62□□□□□ -1.51
COL3A1-205ENST00000470167 GSTM4Q03013 218 aa5.62□□□□□ -1.51
COL3A1-205ENST00000470167 PDE1CQ14123 709 aaPredicted RBP5.62□□□□□ -1.51
COL3A1-205ENST00000470167 ANKRD1Q15327 319 aa5.62□□□□□ -1.51
COL3A1-205ENST00000470167 PPP1R7Q15435 360 aa5.62□□□□□ -1.51
COL3A1-205ENST00000470167 MAPRE2Q15555 327 aa5.62□□□□□ -1.51
COL3A1-205ENST00000470167 TRIP4Q15650 581 aaPredicted RBP5.62□□□□□ -1.51
COL3A1-205ENST00000470167 IMMTQ16891 758 aaKnown RBP5.62□□□□□ -1.51
COL3A1-205ENST00000470167 CTC1Q2NKJ3 1217 aa5.62□□□□□ -1.51
COL3A1-205ENST00000470167 PKDCCQ504Y2 493 aa5.62□□□□□ -1.51
COL3A1-205ENST00000470167 PLEKHG4Q58EX7 1191 aa5.62□□□□□ -1.51
COL3A1-205ENST00000470167 METTL24Q5JXM2 366 aa5.62□□□□□ -1.51
COL3A1-205ENST00000470167 THEMIS2Q5TEJ8 643 aa5.62□□□□□ -1.51
COL3A1-205ENST00000470167 MEX3CQ5U5Q3 659 aaKnown RBP5.62□□□□□ -1.51
COL3A1-205ENST00000470167 B4GALNT4Q76KP1 1039 aa5.62□□□□□ -1.51
COL3A1-205ENST00000470167 PNMA8AQ86V59 439 aaPredicted RBP5.62□□□□□ -1.51
COL3A1-205ENST00000470167 CCDC50Q8IVM0 306 aa5.62□□□□□ -1.51
COL3A1-205ENST00000470167 FAM20CQ8IXL6 584 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms