RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 CCDC196A0A1B0GTZ2 297 aa18.92■□□□□ 0.62
CCDC28B-204ENST00000469003 CHRNA1P02708 482 aa18.92■□□□□ 0.62
CCDC28B-204ENST00000469003 CPA1P15085 419 aa18.92■□□□□ 0.62
CCDC28B-204ENST00000469003 HSPA4P34932 840 aa18.92■□□□□ 0.62
CCDC28B-204ENST00000469003 ADD1P35611 737 aaKnown RBP18.92■□□□□ 0.62
CCDC28B-204ENST00000469003 SREBF1P36956 1147 aa18.92■□□□□ 0.62
CCDC28B-204ENST00000469003 APOBRQ0VD83 1088 aa18.92■□□□□ 0.62
CCDC28B-204ENST00000469003 PFKFB3Q16875 520 aaPredicted RBP18.92■□□□□ 0.62
CCDC28B-204ENST00000469003 AAK1Q2M2I8 961 aa18.92■□□□□ 0.62
CCDC28B-204ENST00000469003 Q6ZUG5 572 aa18.92■□□□□ 0.62
CCDC28B-204ENST00000469003 RSPH3Q86UC2 560 aa18.92■□□□□ 0.62
CCDC28B-204ENST00000469003 SP7Q8TDD2 431 aaPredicted RBP18.92■□□□□ 0.62
CCDC28B-204ENST00000469003 TOP1MTQ969P6 601 aa18.92■□□□□ 0.62
CCDC28B-204ENST00000469003 PCYT2Q99447 389 aa18.92■□□□□ 0.62
CCDC28B-204ENST00000469003 IFIH1Q9BYX4 1025 aaKnown RBP18.92■□□□□ 0.62
CCDC28B-204ENST00000469003 SUGCTQ9HAC7 445 aa18.92■□□□□ 0.62
CCDC28B-204ENST00000469003 TMEM260Q9NX78 707 aa18.92■□□□□ 0.62
CCDC28B-204ENST00000469003 MTUS1Q9ULD2 1270 aa18.92■□□□□ 0.62
CCDC28B-204ENST00000469003 COG5Q9UP83 839 aa18.92■□□□□ 0.62
CCDC28B-204ENST00000469003 SNX14Q9Y5W7 946 aa18.92■□□□□ 0.62
CCDC28B-204ENST00000469003 NID2Q14112 1375 aa18.92■□□□□ 0.62
CCDC28B-204ENST00000469003 REV3LO60673 3130 aa18.91■□□□□ 0.62
CCDC28B-204ENST00000469003 LOC101059915A0A1B0GWI6 518 aaPredicted RBP18.91■□□□□ 0.62
CCDC28B-204ENST00000469003 ARP10275 920 aa18.91■□□□□ 0.62
CCDC28B-204ENST00000469003 TFF2Q03403 129 aa18.91■□□□□ 0.62
CCDC28B-204ENST00000469003 MGAT3Q09327 533 aa18.91■□□□□ 0.62
CCDC28B-204ENST00000469003 MARCH8Q5T0T0 291 aa18.91■□□□□ 0.62
CCDC28B-204ENST00000469003 BLOC1S2Q6QNY1 142 aa18.91■□□□□ 0.62
CCDC28B-204ENST00000469003 NIPA1Q7RTP0 329 aa18.91■□□□□ 0.62
CCDC28B-204ENST00000469003 BRF1Q92994 677 aa18.91■□□□□ 0.62
CCDC28B-204ENST00000469003 C1QTNF1Q9BXJ1 281 aa18.91■□□□□ 0.62
CCDC28B-204ENST00000469003 AZI2Q9H6S1 392 aa18.91■□□□□ 0.62
CCDC28B-204ENST00000469003 AGO4Q9HCK5 861 aaKnown RBP18.91■□□□□ 0.62
CCDC28B-204ENST00000469003 COL4A6Q14031 1691 aa18.91■□□□□ 0.62
CCDC28B-204ENST00000469003 RRN3P2A6NIE6 340 aa18.9■□□□□ 0.62
CCDC28B-204ENST00000469003 MEIS1O00470 390 aa18.9■□□□□ 0.62
CCDC28B-204ENST00000469003 RPLP2P05387 115 aaKnown RBP18.9■□□□□ 0.62
CCDC28B-204ENST00000469003 SCG2P13521 617 aa18.9■□□□□ 0.62
CCDC28B-204ENST00000469003 INSRRP14616 1297 aa18.9■□□□□ 0.62
CCDC28B-204ENST00000469003 ACTR2P61160 394 aa18.9■□□□□ 0.62
CCDC28B-204ENST00000469003 ITGB3BPQ13352 177 aaPredicted RBP18.9■□□□□ 0.62
CCDC28B-204ENST00000469003 FBXL16Q8N461 479 aa18.9■□□□□ 0.62
CCDC28B-204ENST00000469003 DNAJB3Q8WWF6 145 aa18.9■□□□□ 0.62
CCDC28B-204ENST00000469003 TNPO1Q92973 898 aaKnown RBP18.9■□□□□ 0.62
CCDC28B-204ENST00000469003 NECAB3Q96P71 396 aaPredicted RBP18.9■□□□□ 0.62
CCDC28B-204ENST00000469003 ESYT2A0FGR8 921 aa18.89■□□□□ 0.61
CCDC28B-204ENST00000469003 UPP2O95045 317 aa18.89■□□□□ 0.61
CCDC28B-204ENST00000469003 REC8O95072 547 aa18.89■□□□□ 0.61
CCDC28B-204ENST00000469003 ATG7O95352 703 aa18.89■□□□□ 0.61
CCDC28B-204ENST00000469003 GHRP10912 638 aa18.89■□□□□ 0.61
CCDC28B-204ENST00000469003 BMP1P13497 986 aa18.89■□□□□ 0.61
CCDC28B-204ENST00000469003 ZNF76P36508 570 aa18.89■□□□□ 0.61
CCDC28B-204ENST00000469003 IGBP1P78318 339 aa18.89■□□□□ 0.61
CCDC28B-204ENST00000469003 PLPPR4Q7Z2D5 763 aa18.89■□□□□ 0.61
CCDC28B-204ENST00000469003 FBXO22Q8NEZ5 403 aa18.89■□□□□ 0.61
CCDC28B-204ENST00000469003 SAMD11Q96NU1 681 aa18.89■□□□□ 0.61
CCDC28B-204ENST00000469003 YME1L1Q96TA2 773 aa18.89■□□□□ 0.61
CCDC28B-204ENST00000469003 C17orf80Q9BSJ5 609 aa18.89■□□□□ 0.61
CCDC28B-204ENST00000469003 AGXT2Q9BYV1 514 aa18.89■□□□□ 0.61
CCDC28B-204ENST00000469003 TRPC6Q9Y210 931 aa18.89■□□□□ 0.61
CCDC28B-204ENST00000469003 PRPF3O43395 683 aaKnown RBP18.88■□□□□ 0.61
CCDC28B-204ENST00000469003 RPS6KB1P23443 525 aa18.88■□□□□ 0.61
CCDC28B-204ENST00000469003 STAT5BP51692 787 aa18.88■□□□□ 0.61
CCDC28B-204ENST00000469003 LPIN1Q14693 890 aa18.88■□□□□ 0.61
CCDC28B-204ENST00000469003 PLCB4Q15147 1175 aa18.88■□□□□ 0.61
CCDC28B-204ENST00000469003 JAKMIP3Q5VZ66 844 aa18.88■□□□□ 0.61
CCDC28B-204ENST00000469003 MCTP2Q6DN12 878 aa18.88■□□□□ 0.61
CCDC28B-204ENST00000469003 CCDC12Q8WUD4 166 aaPredicted RBP18.88■□□□□ 0.61
CCDC28B-204ENST00000469003 HLA-CQ95604 372 aa18.88■□□□□ 0.61
CCDC28B-204ENST00000469003 ZMYND12Q9H0C1 365 aa18.88■□□□□ 0.61
CCDC28B-204ENST00000469003 CDY2AQ9Y6F7 541 aa18.88■□□□□ 0.61
CCDC28B-204ENST00000469003 CYP3A4P08684 503 aa18.87■□□□□ 0.61
CCDC28B-204ENST00000469003 PSMA5P28066 241 aa18.87■□□□□ 0.61
CCDC28B-204ENST00000469003 KCNQ1P51787 676 aa18.87■□□□□ 0.61
CCDC28B-204ENST00000469003 MRPS6P82932 125 aaKnown RBP18.87■□□□□ 0.61
CCDC28B-204ENST00000469003 PKN1Q16512 942 aa18.87■□□□□ 0.61
CCDC28B-204ENST00000469003 FBXO47Q5MNV8 452 aa18.87■□□□□ 0.61
CCDC28B-204ENST00000469003 NLRC5Q86WI3 1866 aa18.87■□□□□ 0.61
CCDC28B-204ENST00000469003 PLA2G4DQ86XP0 818 aa18.87■□□□□ 0.61
CCDC28B-204ENST00000469003 CRYGNQ8WXF5 182 aa18.87■□□□□ 0.61
CCDC28B-204ENST00000469003 C6orf50Q9HD87 102 aa18.87■□□□□ 0.61
CCDC28B-204ENST00000469003 IGLV3-22A0A075B6J6 115 aa18.86■□□□□ 0.61
CCDC28B-204ENST00000469003 IGKV6D-21A0A0A0MT36 114 aa18.86■□□□□ 0.61
CCDC28B-204ENST00000469003 FAM86B1E9PN63 330 aa18.86■□□□□ 0.61
CCDC28B-204ENST00000469003 CCNE2O96020 404 aa18.86■□□□□ 0.61
CCDC28B-204ENST00000469003 FAM86B2P0C5J1 330 aa18.86■□□□□ 0.61
CCDC28B-204ENST00000469003 HOXD11P31277 338 aaPredicted RBP18.86■□□□□ 0.61
CCDC28B-204ENST00000469003 SLC26A2P50443 739 aa18.86■□□□□ 0.61
CCDC28B-204ENST00000469003 EPC2Q52LR7 807 aa18.86■□□□□ 0.61
CCDC28B-204ENST00000469003 IER5Q5VY09 327 aa18.86■□□□□ 0.61
CCDC28B-204ENST00000469003 TSHZ1Q6ZSZ6 1077 aa18.86■□□□□ 0.61
CCDC28B-204ENST00000469003 ZBTB10Q96DT7 871 aa18.86■□□□□ 0.61
CCDC28B-204ENST00000469003 FAM49AQ9H0Q0 323 aaPredicted RBP18.86■□□□□ 0.61
CCDC28B-204ENST00000469003 PCDHA2Q9Y5H9 948 aa18.86■□□□□ 0.61
CCDC28B-204ENST00000469003 SQORQ9Y6N5 450 aa18.86■□□□□ 0.61
CCDC28B-204ENST00000469003 XIRP2A4UGR9 3374 aa18.86■□□□□ 0.61
CCDC28B-204ENST00000469003 RALGAPA2Q2PPJ7 1873 aa18.86■□□□□ 0.61
CCDC28B-204ENST00000469003 POTEB3A0JP26 581 aa18.85■□□□□ 0.61
CCDC28B-204ENST00000469003 DDX39AO00148 427 aaKnown RBP18.85■□□□□ 0.61
CCDC28B-204ENST00000469003 EPB41L2O43491 1005 aaKnown RBP18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms