RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 GJB5O95377 273 aa21.71■■□□□ 1.07
COL7A1-207ENST00000467985 AMHP03971 560 aa21.71■■□□□ 1.07
COL7A1-207ENST00000467985 CTSHP09668 335 aa21.71■■□□□ 1.07
COL7A1-207ENST00000467985 IGFBP4P22692 258 aa21.71■■□□□ 1.07
COL7A1-207ENST00000467985 SLC26A2P50443 739 aa21.71■■□□□ 1.07
COL7A1-207ENST00000467985 DEFB103AP81534 67 aa21.71■■□□□ 1.07
COL7A1-207ENST00000467985 SETQ01105 290 aaPredicted RBP21.71■■□□□ 1.07
COL7A1-207ENST00000467985 TCTN1Q2MV58 587 aa21.71■■□□□ 1.07
COL7A1-207ENST00000467985 CPLX2Q6PUV4 134 aaKnown RBP21.71■■□□□ 1.07
COL7A1-207ENST00000467985 PLA2G4DQ86XP0 818 aa21.71■■□□□ 1.07
COL7A1-207ENST00000467985 DBF4BQ8NFT6 615 aa21.71■■□□□ 1.07
COL7A1-207ENST00000467985 RAD9AQ99638 391 aa21.71■■□□□ 1.07
COL7A1-207ENST00000467985 PTPRSQ13332 1948 aa21.7■■□□□ 1.07
COL7A1-207ENST00000467985 FAM86B1E9PN63 330 aa21.7■■□□□ 1.06
COL7A1-207ENST00000467985 EIF5BO60841 1220 aaKnown RBP21.7■■□□□ 1.06
COL7A1-207ENST00000467985 ATG7O95352 703 aa21.7■■□□□ 1.06
COL7A1-207ENST00000467985 FAM86B2P0C5J1 330 aa21.7■■□□□ 1.06
COL7A1-207ENST00000467985 STAT5BP51692 787 aa21.7■■□□□ 1.06
COL7A1-207ENST00000467985 TAP1Q03518 808 aa21.7■■□□□ 1.06
COL7A1-207ENST00000467985 SSRP1Q08945 709 aaKnown RBP21.7■■□□□ 1.06
COL7A1-207ENST00000467985 ADGRE1Q14246 886 aa21.7■■□□□ 1.06
COL7A1-207ENST00000467985 FAM177A1Q8N128 213 aaPredicted RBP21.7■■□□□ 1.06
COL7A1-207ENST00000467985 APBB2Q92870 758 aa21.7■■□□□ 1.06
COL7A1-207ENST00000467985 PCYT2Q99447 389 aa21.7■■□□□ 1.06
COL7A1-207ENST00000467985 UPF3BQ9BZI7 483 aaKnown RBP21.7■■□□□ 1.06
COL7A1-207ENST00000467985 PDRG1Q9NUG6 133 aa21.7■■□□□ 1.06
COL7A1-207ENST00000467985 TRPC6Q9Y210 931 aa21.7■■□□□ 1.06
COL7A1-207ENST00000467985 IGLV3-22A0A075B6J6 115 aa21.69■■□□□ 1.06
COL7A1-207ENST00000467985 IPO5O00410 1097 aaKnown RBP21.69■■□□□ 1.06
COL7A1-207ENST00000467985 TBC1D22BQ9NU19 505 aa21.69■■□□□ 1.06
COL7A1-207ENST00000467985 INSRRP14616 1297 aa21.68■■□□□ 1.06
COL7A1-207ENST00000467985 ANAPC15P60006 121 aa21.68■■□□□ 1.06
COL7A1-207ENST00000467985 MKRN4PQ13434 485 aaPredicted RBP21.68■■□□□ 1.06
COL7A1-207ENST00000467985 MARCH8Q5T0T0 291 aa21.68■■□□□ 1.06
COL7A1-207ENST00000467985 FAM160B1Q5W0V3 765 aa21.68■■□□□ 1.06
COL7A1-207ENST00000467985 RUFY4Q6ZNE9 571 aa21.68■■□□□ 1.06
COL7A1-207ENST00000467985 ZNF577Q9BSK1 485 aa21.68■■□□□ 1.06
COL7A1-207ENST00000467985 VPS54Q9P1Q0 977 aa21.68■■□□□ 1.06
COL7A1-207ENST00000467985 TCEAL9Q9UHQ7 104 aa21.68■■□□□ 1.06
COL7A1-207ENST00000467985 SPTBN5Q9NRC6 3674 aaKnown RBP21.67■■□□□ 1.06
COL7A1-207ENST00000467985 MICAL3Q7RTP6 2002 aa21.67■■□□□ 1.06
COL7A1-207ENST00000467985 IGKV6D-21A0A0A0MT36 114 aa21.67■■□□□ 1.06
COL7A1-207ENST00000467985 BACH1O14867 736 aa21.67■■□□□ 1.06
COL7A1-207ENST00000467985 DEXIO95424 95 aa21.67■■□□□ 1.06
COL7A1-207ENST00000467985 POU3F3P20264 500 aaPredicted RBP21.67■■□□□ 1.06
COL7A1-207ENST00000467985 CIITAP33076 1130 aa21.67■■□□□ 1.06
COL7A1-207ENST00000467985 IGBP1P78318 339 aa21.67■■□□□ 1.06
COL7A1-207ENST00000467985 PLCB4Q15147 1175 aa21.67■■□□□ 1.06
COL7A1-207ENST00000467985 ABHD15Q6UXT9 468 aa21.67■■□□□ 1.06
COL7A1-207ENST00000467985 USP38Q8NB14 1042 aa21.67■■□□□ 1.06
COL7A1-207ENST00000467985 IFIH1Q9BYX4 1025 aaKnown RBP21.67■■□□□ 1.06
COL7A1-207ENST00000467985 C22orf23Q9BZE7 217 aa21.67■■□□□ 1.06
COL7A1-207ENST00000467985 INSL6Q9Y581 213 aa21.67■■□□□ 1.06
COL7A1-207ENST00000467985 XIRP2A4UGR9 3374 aa21.66■■□□□ 1.06
COL7A1-207ENST00000467985 POTEB3A0JP26 581 aa21.66■■□□□ 1.06
COL7A1-207ENST00000467985 ADAMTS3O15072 1205 aa21.66■■□□□ 1.06
COL7A1-207ENST00000467985 DHX15O43143 795 aaKnown RBP21.66■■□□□ 1.06
COL7A1-207ENST00000467985 GTPBP6O43824 516 aaPredicted RBP21.66■■□□□ 1.06
COL7A1-207ENST00000467985 PPFIA3O75145 1194 aa21.66■■□□□ 1.06
COL7A1-207ENST00000467985 CDKL5O76039 1030 aa21.66■■□□□ 1.06
COL7A1-207ENST00000467985 CCNE2O96020 404 aa21.66■■□□□ 1.06
COL7A1-207ENST00000467985 CHRNA1P02708 482 aa21.66■■□□□ 1.06
COL7A1-207ENST00000467985 NLRP5P59047 1200 aa21.66■■□□□ 1.06
COL7A1-207ENST00000467985 ZNF746Q6NUN9 644 aaPredicted RBP21.66■■□□□ 1.06
COL7A1-207ENST00000467985 MIS18BP1Q6P0N0 1132 aa21.66■■□□□ 1.06
COL7A1-207ENST00000467985 POTEBQ6S5H4 581 aa21.66■■□□□ 1.06
COL7A1-207ENST00000467985 LIN28BQ6ZN17 250 aaKnown RBP eCLIP21.66■■□□□ 1.06
COL7A1-207ENST00000467985 TMCO2Q7Z6W1 182 aaPredicted RBP21.66■■□□□ 1.06
COL7A1-207ENST00000467985 PPM1EQ8WY54 764 aa21.66■■□□□ 1.06
COL7A1-207ENST00000467985 ARNTL2Q8WYA1 636 aa21.66■■□□□ 1.06
COL7A1-207ENST00000467985 DDX39AO00148 427 aaKnown RBP21.65■■□□□ 1.06
COL7A1-207ENST00000467985 USP11P51784 963 aa21.65■■□□□ 1.06
COL7A1-207ENST00000467985 KRT76Q01546 638 aa21.65■■□□□ 1.06
COL7A1-207ENST00000467985 PRR16Q569H4 304 aa21.65■■□□□ 1.06
COL7A1-207ENST00000467985 IER5Q5VY09 327 aa21.65■■□□□ 1.06
COL7A1-207ENST00000467985 GALNT17Q6IS24 598 aa21.65■■□□□ 1.06
COL7A1-207ENST00000467985 SMAP1Q8IYB5 467 aaPredicted RBP21.65■■□□□ 1.06
COL7A1-207ENST00000467985 MYOCDQ8IZQ8 938 aa21.65■■□□□ 1.06
COL7A1-207ENST00000467985 RASGRP4Q8TDF6 673 aa21.65■■□□□ 1.06
COL7A1-207ENST00000467985 DNAJB3Q8WWF6 145 aa21.65■■□□□ 1.06
COL7A1-207ENST00000467985 CERS4Q9HA82 394 aa21.65■■□□□ 1.06
COL7A1-207ENST00000467985 PCDHA2Q9Y5H9 948 aa21.65■■□□□ 1.06
COL7A1-207ENST00000467985 TTC28Q96AY4 2481 aa21.65■■□□□ 1.06
COL7A1-207ENST00000467985 LCHNA4D1U4 455 aa21.64■■□□□ 1.05
COL7A1-207ENST00000467985 ARHGEF15O94989 841 aa21.64■■□□□ 1.05
COL7A1-207ENST00000467985 MRPS6P82932 125 aaKnown RBP21.64■■□□□ 1.05
COL7A1-207ENST00000467985 MGAT3Q09327 533 aa21.64■■□□□ 1.05
COL7A1-207ENST00000467985 STK3Q13188 491 aa21.64■■□□□ 1.05
COL7A1-207ENST00000467985 ANKRD1Q15327 319 aa21.64■■□□□ 1.05
COL7A1-207ENST00000467985 FAM117BQ6P1L5 589 aa21.64■■□□□ 1.05
COL7A1-207ENST00000467985 TGS1Q96RS0 853 aaKnown RBP21.64■■□□□ 1.05
COL7A1-207ENST00000467985 TSPYL2Q9H2G4 693 aaPredicted RBP21.64■■□□□ 1.05
COL7A1-207ENST00000467985 ZNF302Q9NR11 478 aa21.64■■□□□ 1.05
COL7A1-207ENST00000467985 PCDHA4Q9UN74 947 aa21.64■■□□□ 1.05
COL7A1-207ENST00000467985 M0QZ92 97 aa21.63■■□□□ 1.05
COL7A1-207ENST00000467985 HBP1O60381 514 aa21.63■■□□□ 1.05
COL7A1-207ENST00000467985 GHRP10912 638 aa21.63■■□□□ 1.05
COL7A1-207ENST00000467985 HTRA4P83105 476 aaPredicted RBP21.63■■□□□ 1.05
COL7A1-207ENST00000467985 CCDC85BQ15834 202 aaPredicted RBP21.63■■□□□ 1.05
COL7A1-207ENST00000467985 PDXDC2PQ6P474 469 aa21.63■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms