RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 CMTR1Q8N1G2 835 aaKnown RBP13.68□□□□□ -0.22
SQSTM1-206ENST00000466342 SYTL5Q8TDW5 730 aaPredicted RBP13.68□□□□□ -0.22
SQSTM1-206ENST00000466342 KAT2BQ92831 832 aa13.68□□□□□ -0.22
SQSTM1-206ENST00000466342 TOP1MTQ969P6 601 aa13.68□□□□□ -0.22
SQSTM1-206ENST00000466342 ZNF274Q96GC6 653 aaPredicted RBP13.68□□□□□ -0.22
SQSTM1-206ENST00000466342 TAAR1Q96RJ0 339 aa13.68□□□□□ -0.22
SQSTM1-206ENST00000466342 PIGSQ96S52 555 aa13.68□□□□□ -0.22
SQSTM1-206ENST00000466342 IGFLR1Q9H665 355 aa13.68□□□□□ -0.22
SQSTM1-206ENST00000466342 FAM217BQ9NTX9 383 aaPredicted RBP13.68□□□□□ -0.22
SQSTM1-206ENST00000466342 HDAC6Q9UBN7 1215 aa13.68□□□□□ -0.22
SQSTM1-206ENST00000466342 DMDP11532 3685 aa13.68□□□□□ -0.22
SQSTM1-206ENST00000466342 EMSYQ7Z589 1322 aa13.67□□□□□ -0.22
SQSTM1-206ENST00000466342 CNTNAP5Q8WYK1 1306 aa13.67□□□□□ -0.22
SQSTM1-206ENST00000466342 PNMA6FA0A0J9YX94 578 aa13.67□□□□□ -0.22
SQSTM1-206ENST00000466342 C5orf67F2Z3F1 127 aa13.67□□□□□ -0.22
SQSTM1-206ENST00000466342 PPP1R11O60927 126 aaPredicted RBP13.67□□□□□ -0.22
SQSTM1-206ENST00000466342 TBX10O75333 385 aa13.67□□□□□ -0.22
SQSTM1-206ENST00000466342 EYA4O95677 639 aa13.67□□□□□ -0.22
SQSTM1-206ENST00000466342 RB1P06400 928 aa13.67□□□□□ -0.22
SQSTM1-206ENST00000466342 NBL1P41271 181 aa13.67□□□□□ -0.22
SQSTM1-206ENST00000466342 GHRHRQ02643 423 aa13.67□□□□□ -0.22
SQSTM1-206ENST00000466342 CBX2Q14781 532 aaPredicted RBP13.67□□□□□ -0.22
SQSTM1-206ENST00000466342 STXBP2Q15833 593 aa13.67□□□□□ -0.22
SQSTM1-206ENST00000466342 C7orf31Q8N865 590 aa13.67□□□□□ -0.22
SQSTM1-206ENST00000466342 RRP36Q96EU6 259 aaKnown RBP13.67□□□□□ -0.22
SQSTM1-206ENST00000466342 ASIC4Q96FT7 647 aa13.67□□□□□ -0.22
SQSTM1-206ENST00000466342 MSLNLQ96KJ4 702 aa13.67□□□□□ -0.22
SQSTM1-206ENST00000466342 RMDN3Q96TC7 470 aa13.67□□□□□ -0.22
SQSTM1-206ENST00000466342 LARP6Q9BRS8 491 aaKnown RBP13.67□□□□□ -0.22
SQSTM1-206ENST00000466342 PCDHA1Q9Y5I3 950 aa13.67□□□□□ -0.22
SQSTM1-206ENST00000466342 RBAK-RBAKDNI3L0D1 243 aa13.66□□□□□ -0.22
SQSTM1-206ENST00000466342 LINC01565O15544 149 aa13.66□□□□□ -0.22
SQSTM1-206ENST00000466342 UPP2O95045 317 aa13.66□□□□□ -0.22
SQSTM1-206ENST00000466342 CFBP00751 764 aa13.66□□□□□ -0.22
SQSTM1-206ENST00000466342 MMP3P08254 477 aa13.66□□□□□ -0.22
SQSTM1-206ENST00000466342 GTF2F1P35269 517 aaKnown RBP eCLIP13.66□□□□□ -0.22
SQSTM1-206ENST00000466342 ADD1P35611 737 aaKnown RBP13.66□□□□□ -0.22
SQSTM1-206ENST00000466342 HSD17B4P51659 736 aa13.66□□□□□ -0.22
SQSTM1-206ENST00000466342 CCT2P78371 535 aaKnown RBP13.66□□□□□ -0.22
SQSTM1-206ENST00000466342 FUT2Q10981 343 aa13.66□□□□□ -0.22
SQSTM1-206ENST00000466342 RABEP1Q15276 862 aa13.66□□□□□ -0.22
SQSTM1-206ENST00000466342 PLEKHG4Q58EX7 1191 aa13.66□□□□□ -0.22
SQSTM1-206ENST00000466342 ARHGEF16Q5VV41 709 aa13.66□□□□□ -0.22
SQSTM1-206ENST00000466342 CCDC82Q8N4S0 544 aa13.66□□□□□ -0.22
SQSTM1-206ENST00000466342 AFG1LQ8WV93 481 aa13.66□□□□□ -0.22
SQSTM1-206ENST00000466342 COL20A1Q9P218 1284 aa13.66□□□□□ -0.22
SQSTM1-206ENST00000466342 SEC63Q9UGP8 760 aaKnown RBP13.66□□□□□ -0.22
SQSTM1-206ENST00000466342 TPCN1Q9ULQ1 816 aa13.66□□□□□ -0.22
SQSTM1-206ENST00000466342 MYO10Q9HD67 2058 aa13.65□□□□□ -0.22
SQSTM1-206ENST00000466342 OPLAHO14841 1288 aa13.65□□□□□ -0.22
SQSTM1-206ENST00000466342 GRM6O15303 877 aa13.65□□□□□ -0.22
SQSTM1-206ENST00000466342 GALR2O43603 387 aaPredicted RBP13.65□□□□□ -0.22
SQSTM1-206ENST00000466342 EIF3JO75822 258 aaKnown RBP13.65□□□□□ -0.22
SQSTM1-206ENST00000466342 ARIH2O95376 493 aa13.65□□□□□ -0.22
SQSTM1-206ENST00000466342 CCDC62Q6P9F0 684 aa13.65□□□□□ -0.22
SQSTM1-206ENST00000466342 PIBF1Q8WXW3 757 aa13.65□□□□□ -0.22
SQSTM1-206ENST00000466342 WNT8BQ93098 351 aa13.65□□□□□ -0.22
SQSTM1-206ENST00000466342 C11orf84Q9BUA3 381 aaPredicted RBP13.65□□□□□ -0.22
SQSTM1-206ENST00000466342 NCOA5Q9HCD5 579 aaKnown RBP13.65□□□□□ -0.22
SQSTM1-206ENST00000466342 CACNA1BQ00975 2339 aa13.64□□□□□ -0.23
SQSTM1-206ENST00000466342 RSPH10B2B2RC85 870 aa13.64□□□□□ -0.23
SQSTM1-206ENST00000466342 GH1P01241 217 aa13.64□□□□□ -0.23
SQSTM1-206ENST00000466342 NR3C2P08235 984 aa13.64□□□□□ -0.23
SQSTM1-206ENST00000466342 RSPH10BP0C881 870 aa13.64□□□□□ -0.23
SQSTM1-206ENST00000466342 CTNNB1P35222 781 aa13.64□□□□□ -0.23
SQSTM1-206ENST00000466342 BMPR1AP36894 532 aa13.64□□□□□ -0.23
SQSTM1-206ENST00000466342 PSEN2P49810 448 aa13.64□□□□□ -0.23
SQSTM1-206ENST00000466342 NDUFV1P49821 464 aa13.64□□□□□ -0.23
SQSTM1-206ENST00000466342 STK3Q13188 491 aa13.64□□□□□ -0.23
SQSTM1-206ENST00000466342 NTRK3Q16288 839 aa13.64□□□□□ -0.23
SQSTM1-206ENST00000466342 DGKDQ16760 1214 aa13.64□□□□□ -0.23
SQSTM1-206ENST00000466342 FIBCD1Q8N539 461 aa13.64□□□□□ -0.23
SQSTM1-206ENST00000466342 ALG1Q9BT22 464 aa13.64□□□□□ -0.23
SQSTM1-206ENST00000466342 SLKQ9H2G2 1235 aaPredicted RBP13.64□□□□□ -0.23
SQSTM1-206ENST00000466342 PXMP2Q9NR77 195 aa13.64□□□□□ -0.23
SQSTM1-206ENST00000466342 RWDD3Q9Y3V2 267 aa13.64□□□□□ -0.23
SQSTM1-206ENST00000466342 hCG_1642624A0A1W2PR95 340 aa13.63□□□□□ -0.23
SQSTM1-206ENST00000466342 PFKFB2O60825 505 aa13.63□□□□□ -0.23
SQSTM1-206ENST00000466342 IFNAR1P17181 557 aa13.63□□□□□ -0.23
SQSTM1-206ENST00000466342 EIF2AK2P19525 551 aaKnown RBP13.63□□□□□ -0.23
SQSTM1-206ENST00000466342 ARHGAP1Q07960 439 aa13.63□□□□□ -0.23
SQSTM1-206ENST00000466342 SCRN1Q12765 414 aa13.63□□□□□ -0.23
SQSTM1-206ENST00000466342 SEPT14Q6ZU15 432 aa13.63□□□□□ -0.23
SQSTM1-206ENST00000466342 SMRP1Q8NCR6 262 aa13.63□□□□□ -0.23
SQSTM1-206ENST00000466342 SEPT8Q92599 483 aa13.63□□□□□ -0.23
SQSTM1-206ENST00000466342 RIPOR3Q96MK2 946 aa13.63□□□□□ -0.23
SQSTM1-206ENST00000466342 KATNAL1Q9BW62 490 aa13.63□□□□□ -0.23
SQSTM1-206ENST00000466342 PHF7Q9BWX1 381 aaPredicted RBP13.63□□□□□ -0.23
SQSTM1-206ENST00000466342 RNF26Q9BY78 433 aaPredicted RBP13.63□□□□□ -0.23
SQSTM1-206ENST00000466342 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.62□□□□□ -0.23
SQSTM1-206ENST00000466342 GCOM1H8Y6P7 765 aaPredicted RBP13.62□□□□□ -0.23
SQSTM1-206ENST00000466342 hCG_1984214I3L0E3 225 aa13.62□□□□□ -0.23
SQSTM1-206ENST00000466342 HAS3O00219 553 aa13.62□□□□□ -0.23
SQSTM1-206ENST00000466342 CPLX1O14810 134 aa13.62□□□□□ -0.23
SQSTM1-206ENST00000466342 PRPF3O43395 683 aaKnown RBP13.62□□□□□ -0.23
SQSTM1-206ENST00000466342 KRT37O76014 449 aa13.62□□□□□ -0.23
SQSTM1-206ENST00000466342 LARGE1O95461 756 aa13.62□□□□□ -0.23
SQSTM1-206ENST00000466342 POLR2MP0CAP2 368 aa13.62□□□□□ -0.23
SQSTM1-206ENST00000466342 ICAM3P32942 547 aa13.62□□□□□ -0.23
SQSTM1-206ENST00000466342 ZNF200P98182 395 aaPredicted RBP13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms