RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 Q9Y3F1 56 aa13.27□□□□□ -0.29
USP54-209ENST00000464635 FAM205CA6NFA0 338 aa13.26□□□□□ -0.29
USP54-209ENST00000464635 OPLAHO14841 1288 aa13.26□□□□□ -0.29
USP54-209ENST00000464635 TLR3O15455 904 aaKnown RBP13.26□□□□□ -0.29
USP54-209ENST00000464635 B4GALT4O60513 344 aa13.26□□□□□ -0.29
USP54-209ENST00000464635 NEMFO60524 1076 aa13.26□□□□□ -0.29
USP54-209ENST00000464635 CABYRO75952 493 aa13.26□□□□□ -0.29
USP54-209ENST00000464635 SLFN14P0C7P3 912 aa13.26□□□□□ -0.29
USP54-209ENST00000464635 ACRP10323 421 aa13.26□□□□□ -0.29
USP54-209ENST00000464635 CSF2RAP15509 400 aa13.26□□□□□ -0.29
USP54-209ENST00000464635 TXLNAP40222 546 aa13.26□□□□□ -0.29
USP54-209ENST00000464635 FXR2P51116 673 aaKnown RBP eCLIP13.26□□□□□ -0.29
USP54-209ENST00000464635 PURAQ00577 322 aaKnown RBP13.26□□□□□ -0.29
USP54-209ENST00000464635 TYRO3Q06418 890 aa13.26□□□□□ -0.29
USP54-209ENST00000464635 ZNF697Q5TEC3 545 aa13.26□□□□□ -0.29
USP54-209ENST00000464635 MFSD5Q6N075 450 aa13.26□□□□□ -0.29
USP54-209ENST00000464635 C16orf59Q7L2K0 433 aa13.26□□□□□ -0.29
USP54-209ENST00000464635 TRIML1Q8N9V2 468 aa13.26□□□□□ -0.29
USP54-209ENST00000464635 OR6J1Q8NGC5 347 aa13.26□□□□□ -0.29
USP54-209ENST00000464635 SPATA20Q8TB22 786 aa13.26□□□□□ -0.29
USP54-209ENST00000464635 ANP32BQ92688 251 aaKnown RBP13.26□□□□□ -0.29
USP54-209ENST00000464635 CLIC6Q96NY7 704 aa13.26□□□□□ -0.29
USP54-209ENST00000464635 MTMR9Q96QG7 549 aa13.26□□□□□ -0.29
USP54-209ENST00000464635 BPIFA3Q9BQP9 254 aa13.26□□□□□ -0.29
USP54-209ENST00000464635 GTPBP4Q9BZE4 634 aaKnown RBP13.26□□□□□ -0.29
USP54-209ENST00000464635 CSRNP2Q9H175 543 aa13.26□□□□□ -0.29
USP54-209ENST00000464635 TTYH1Q9H313 450 aaPredicted RBP13.26□□□□□ -0.29
USP54-209ENST00000464635 EHMT1Q9H9B1 1298 aa13.26□□□□□ -0.29
USP54-209ENST00000464635 DOCK5Q9H7D0 1870 aa13.25□□□□□ -0.29
USP54-209ENST00000464635 ZEB2O60315 1214 aa13.25□□□□□ -0.29
USP54-209ENST00000464635 MYL3P08590 195 aa13.25□□□□□ -0.29
USP54-209ENST00000464635 OR52Z1P0C646 297 aa13.25□□□□□ -0.29
USP54-209ENST00000464635 MCM7P33993 719 aa13.25□□□□□ -0.29
USP54-209ENST00000464635 SREBF1P36956 1147 aa13.25□□□□□ -0.29
USP54-209ENST00000464635 SMAD3P84022 425 aaKnown RBP13.25□□□□□ -0.29
USP54-209ENST00000464635 TMEM240Q5SV17 173 aa13.25□□□□□ -0.29
USP54-209ENST00000464635 MCF2L2Q86YR7 1114 aa13.25□□□□□ -0.29
USP54-209ENST00000464635 IGSF22Q8N9C0 903 aa13.25□□□□□ -0.29
USP54-209ENST00000464635 IQUBQ8NA54 791 aa13.25□□□□□ -0.29
USP54-209ENST00000464635 CNNM3Q8NE01 707 aa13.25□□□□□ -0.29
USP54-209ENST00000464635 FAM200AQ8TCP9 573 aa13.25□□□□□ -0.29
USP54-209ENST00000464635 SCFD2Q8WU76 684 aa13.25□□□□□ -0.29
USP54-209ENST00000464635 NAT10Q9H0A0 1025 aaKnown RBP13.25□□□□□ -0.29
USP54-209ENST00000464635 RBSNQ9H1K0 784 aa13.25□□□□□ -0.29
USP54-209ENST00000464635 WNT7AO00755 349 aa13.24□□□□□ -0.29
USP54-209ENST00000464635 ADAMTS3O15072 1205 aa13.24□□□□□ -0.29
USP54-209ENST00000464635 CCNT1O60563 726 aaKnown RBP13.24□□□□□ -0.29
USP54-209ENST00000464635 TXNP10599 105 aaKnown RBP13.24□□□□□ -0.29
USP54-209ENST00000464635 ATP2B1P20020 1258 aa13.24□□□□□ -0.29
USP54-209ENST00000464635 SARSP49591 514 aaKnown RBP13.24□□□□□ -0.29
USP54-209ENST00000464635 PPIGQ13427 754 aaKnown RBP eCLIP13.24□□□□□ -0.29
USP54-209ENST00000464635 CAMK4Q16566 473 aa13.24□□□□□ -0.29
USP54-209ENST00000464635 STX1AQ16623 288 aa13.24□□□□□ -0.29
USP54-209ENST00000464635 Q4G0T1 1027 aa13.24□□□□□ -0.29
USP54-209ENST00000464635 JAKMIP3Q5VZ66 844 aa13.24□□□□□ -0.29
USP54-209ENST00000464635 SLFN12Q8IYM2 578 aa13.24□□□□□ -0.29
USP54-209ENST00000464635 SLC17A8Q8NDX2 589 aa13.24□□□□□ -0.29
USP54-209ENST00000464635 RASGRP4Q8TDF6 673 aa13.24□□□□□ -0.29
USP54-209ENST00000464635 NOC4LQ9BVI4 516 aaKnown RBP13.24□□□□□ -0.29
USP54-209ENST00000464635 WNT8AQ9H1J5 351 aa13.24□□□□□ -0.29
USP54-209ENST00000464635 HIPK3Q9H422 1215 aa13.24□□□□□ -0.29
USP54-209ENST00000464635 EYSQ5T1H1 3165 aa13.24□□□□□ -0.29
USP54-209ENST00000464635 TRIP12Q14669 1992 aaPredicted RBP13.23□□□□□ -0.29
USP54-209ENST00000464635 SPDYE3A6NKU9 549 aa13.23□□□□□ -0.29
USP54-209ENST00000464635 EDIL3O43854 480 aa13.23□□□□□ -0.29
USP54-209ENST00000464635 CFBP00751 764 aa13.23□□□□□ -0.29
USP54-209ENST00000464635 EIF2AK2P19525 551 aaKnown RBP13.23□□□□□ -0.29
USP54-209ENST00000464635 CPT1AP50416 773 aa13.23□□□□□ -0.29
USP54-209ENST00000464635 HSD17B4P51659 736 aa13.23□□□□□ -0.29
USP54-209ENST00000464635 CCL23P55773 120 aa13.23□□□□□ -0.29
USP54-209ENST00000464635 TMEM266Q2M3C6 531 aa13.23□□□□□ -0.29
USP54-209ENST00000464635 LETM2Q2VYF4 491 aa13.23□□□□□ -0.29
USP54-209ENST00000464635 LONRF3Q496Y0 759 aa13.23□□□□□ -0.29
USP54-209ENST00000464635 CCDC62Q6P9F0 684 aa13.23□□□□□ -0.29
USP54-209ENST00000464635 SEPT14Q6ZU15 432 aa13.23□□□□□ -0.29
USP54-209ENST00000464635 ZNF365Q70YC5 407 aa13.23□□□□□ -0.29
USP54-209ENST00000464635 TMEM199Q8N511 208 aa13.23□□□□□ -0.29
USP54-209ENST00000464635 FAM20AQ96MK3 541 aa13.23□□□□□ -0.29
USP54-209ENST00000464635 RMDN3Q96TC7 470 aa13.23□□□□□ -0.29
USP54-209ENST00000464635 MPHOSPH6Q99547 160 aaKnown RBP13.23□□□□□ -0.29
USP54-209ENST00000464635 CDX2Q99626 313 aaPredicted RBP13.23□□□□□ -0.29
USP54-209ENST00000464635 ANO3Q9BYT9 981 aa13.23□□□□□ -0.29
USP54-209ENST00000464635 SEMA6BQ9H3T3 888 aa13.23□□□□□ -0.29
USP54-209ENST00000464635 TRMT13Q9NUP7 481 aaKnown RBP13.23□□□□□ -0.29
USP54-209ENST00000464635 CCDC39Q9UFE4 941 aa13.23□□□□□ -0.29
USP54-209ENST00000464635 MRVI1Q9Y6F6 885 aa13.23□□□□□ -0.29
USP54-209ENST00000464635 PTPRSQ13332 1948 aa13.22□□□□□ -0.29
USP54-209ENST00000464635 VWA3AA6NCI4 1184 aa13.22□□□□□ -0.29
USP54-209ENST00000464635 A6NJR5 290 aa13.22□□□□□ -0.29
USP54-209ENST00000464635 GRXCR1A8MXD5 290 aa13.22□□□□□ -0.29
USP54-209ENST00000464635 GCOM1H8Y6P7 765 aaPredicted RBP13.22□□□□□ -0.29
USP54-209ENST00000464635 NKRFO15226 690 aaKnown RBP eCLIP13.22□□□□□ -0.29
USP54-209ENST00000464635 POLR2DO15514 142 aaKnown RBP13.22□□□□□ -0.29
USP54-209ENST00000464635 ACTN4O43707 911 aaKnown RBP13.22□□□□□ -0.29
USP54-209ENST00000464635 POLR2MP0CAP2 368 aa13.22□□□□□ -0.29
USP54-209ENST00000464635 CYP2C9P11712 490 aa13.22□□□□□ -0.29
USP54-209ENST00000464635 NLRP12P59046 1061 aa13.22□□□□□ -0.29
USP54-209ENST00000464635 ARHGAP1Q07960 439 aa13.22□□□□□ -0.29
USP54-209ENST00000464635 ZRSR1Q15695 479 aaKnown RBP13.22□□□□□ -0.29
USP54-209ENST00000464635 E2F4Q16254 413 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms