RNA–Protein interactions for RNA: ENST00000464577.1

USP48-206, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 2,089 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-206ENST00000464577 MIEF2Q96C03 454 aa7.98□□□□□ -1.13
USP48-206ENST00000464577 HVCN1Q96D96 273 aa7.98□□□□□ -1.13
USP48-206ENST00000464577 PSMD1Q99460 953 aa7.98□□□□□ -1.13
USP48-206ENST00000464577 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP7.98□□□□□ -1.13
USP48-206ENST00000464577 PACSIN1Q9BY11 444 aa7.98□□□□□ -1.13
USP48-206ENST00000464577 FAM129AQ9BZQ8 928 aa7.98□□□□□ -1.13
USP48-206ENST00000464577 NEUROG2Q9H2A3 272 aa7.98□□□□□ -1.13
USP48-206ENST00000464577 CENPHQ9H3R5 247 aa7.98□□□□□ -1.13
USP48-206ENST00000464577 CCDC87Q9NVE4 849 aa7.98□□□□□ -1.13
USP48-206ENST00000464577 CNOT8Q9UFF9 292 aaKnown RBP7.98□□□□□ -1.13
USP48-206ENST00000464577 NENFQ9UMX5 172 aa7.98□□□□□ -1.13
USP48-206ENST00000464577 NOC2LQ9Y3T9 749 aaKnown RBP7.98□□□□□ -1.13
USP48-206ENST00000464577 UTP18Q9Y5J1 556 aaKnown RBP eCLIP7.98□□□□□ -1.13
USP48-206ENST00000464577 KLRF2D3W0D1 207 aa7.98□□□□□ -1.13
USP48-206ENST00000464577 TRAF5O00463 557 aa7.98□□□□□ -1.13
USP48-206ENST00000464577 CLGNO14967 610 aa7.98□□□□□ -1.13
USP48-206ENST00000464577 SLC26A4O43511 780 aa7.98□□□□□ -1.13
USP48-206ENST00000464577 ZPR1O75312 459 aa7.98□□□□□ -1.13
USP48-206ENST00000464577 PPFIA2O75334 1257 aa7.98□□□□□ -1.13
USP48-206ENST00000464577 USP17L8P0C7I0 530 aa7.98□□□□□ -1.13
USP48-206ENST00000464577 TMOD1P28289 359 aa7.98□□□□□ -1.13
USP48-206ENST00000464577 TXKP42681 527 aa7.98□□□□□ -1.13
USP48-206ENST00000464577 NPEPPSP55786 919 aa7.98□□□□□ -1.13
USP48-206ENST00000464577 CRYMQ14894 314 aa7.98□□□□□ -1.13
USP48-206ENST00000464577 ODF2Q5BJF6 829 aa7.98□□□□□ -1.13
USP48-206ENST00000464577 FAM26FQ5R3K3 315 aa7.98□□□□□ -1.13
USP48-206ENST00000464577 ERMARDQ5T6L9 678 aa7.98□□□□□ -1.13
USP48-206ENST00000464577 KRT79Q5XKE5 535 aa7.98□□□□□ -1.13
USP48-206ENST00000464577 SLFN11Q7Z7L1 901 aa7.98□□□□□ -1.13
USP48-206ENST00000464577 HOOK3Q86VS8 718 aa7.98□□□□□ -1.13
USP48-206ENST00000464577 REXO1Q8N1G1 1221 aaKnown RBP7.98□□□□□ -1.13
USP48-206ENST00000464577 FAM133AQ8N9E0 248 aa7.98□□□□□ -1.13
USP48-206ENST00000464577 LMBR1Q8WVP7 490 aa7.98□□□□□ -1.13
USP48-206ENST00000464577 UBLCP1Q8WVY7 318 aaPredicted RBP7.98□□□□□ -1.13
USP48-206ENST00000464577 DNAJC19Q96DA6 116 aa7.98□□□□□ -1.13
USP48-206ENST00000464577 CHMP6Q96FZ7 201 aa7.98□□□□□ -1.13
USP48-206ENST00000464577 XPO6Q96QU8 1125 aaKnown RBP7.98□□□□□ -1.13
USP48-206ENST00000464577 TMEM47Q9BQJ4 181 aa7.98□□□□□ -1.13
USP48-206ENST00000464577 TXLNGYQ9BZA5 131 aa7.98□□□□□ -1.13
USP48-206ENST00000464577 SUCLA2Q9P2R7 463 aaPredicted RBP7.98□□□□□ -1.13
USP48-206ENST00000464577 INTUQ9ULD6 942 aa7.98□□□□□ -1.13
USP48-206ENST00000464577 TTC7AQ9ULT0 858 aaPredicted RBP7.98□□□□□ -1.13
USP48-206ENST00000464577 MINPP1Q9UNW1 487 aa7.98□□□□□ -1.13
USP48-206ENST00000464577 NOVA2Q9UNW9 492 aaKnown RBP7.98□□□□□ -1.13
USP48-206ENST00000464577 NIP7Q9Y221 180 aaKnown RBP eCLIP7.98□□□□□ -1.13
USP48-206ENST00000464577 STXBP5LQ9Y2K9 1186 aa7.98□□□□□ -1.13
USP48-206ENST00000464577 ROBO1Q9Y6N7 1651 aa7.97□□□□□ -1.13
USP48-206ENST00000464577 PPIP5K2O43314 1243 aa7.97□□□□□ -1.13
USP48-206ENST00000464577 TSPY3P0CV98 308 aa7.97□□□□□ -1.13
USP48-206ENST00000464577 TSPY8P0CW00 308 aa7.97□□□□□ -1.13
USP48-206ENST00000464577 PDHBP11177 359 aa7.97□□□□□ -1.13
USP48-206ENST00000464577 PRKCIP41743 596 aa7.97□□□□□ -1.13
USP48-206ENST00000464577 RNASE9P60153 205 aaKnown RBP7.97□□□□□ -1.13
USP48-206ENST00000464577 MAGOHP61326 146 aaKnown RBP7.97□□□□□ -1.13
USP48-206ENST00000464577 ITIH4Q14624 930 aa7.97□□□□□ -1.13
USP48-206ENST00000464577 PPP2R5EQ16537 467 aa7.97□□□□□ -1.13
USP48-206ENST00000464577 KRT71Q3SY84 523 aa7.97□□□□□ -1.13
USP48-206ENST00000464577 SPTY2D1Q68D10 685 aaPredicted RBP7.97□□□□□ -1.13
USP48-206ENST00000464577 CRELD2Q6UXH1 353 aaPredicted RBP7.97□□□□□ -1.13
USP48-206ENST00000464577 SYCE1Q8N0S2 351 aa7.97□□□□□ -1.13
USP48-206ENST00000464577 METTL13Q8N6R0 699 aa7.97□□□□□ -1.13
USP48-206ENST00000464577 CCDC197Q8NCU1 140 aa7.97□□□□□ -1.13
USP48-206ENST00000464577 TPCN2Q8NHX9 752 aa7.97□□□□□ -1.13
USP48-206ENST00000464577 SNX29Q8TEQ0 813 aa7.97□□□□□ -1.13
USP48-206ENST00000464577 MAGOHBQ96A72 148 aaKnown RBP7.97□□□□□ -1.13
USP48-206ENST00000464577 SEC63Q9UGP8 760 aaKnown RBP7.97□□□□□ -1.13
USP48-206ENST00000464577 ADAMTS1Q9UHI8 967 aa7.97□□□□□ -1.13
USP48-206ENST00000464577 NAV1Q8NEY1 1877 aa7.97□□□□□ -1.13
USP48-206ENST00000464577 TNRC6CQ9HCJ0 1690 aaKnown RBP7.97□□□□□ -1.13
USP48-206ENST00000464577 USP17L3A6NCW0 530 aa7.96□□□□□ -1.13
USP48-206ENST00000464577 USP17L4A6NCW7 530 aa7.96□□□□□ -1.13
USP48-206ENST00000464577 CCT8L1PA6NM43 557 aa7.96□□□□□ -1.13
USP48-206ENST00000464577 F8W031 263 aaPredicted RBP7.96□□□□□ -1.13
USP48-206ENST00000464577 KRIT1O00522 736 aa7.96□□□□□ -1.13
USP48-206ENST00000464577 ASAP2O43150 1006 aa7.96□□□□□ -1.13
USP48-206ENST00000464577 DAPK3O43293 454 aa7.96□□□□□ -1.13
USP48-206ENST00000464577 TRIM37O94972 964 aa7.96□□□□□ -1.13
USP48-206ENST00000464577 NUDT17P0C025 328 aa7.96□□□□□ -1.13
USP48-206ENST00000464577 ERCC3P19447 782 aa7.96□□□□□ -1.13
USP48-206ENST00000464577 POU5F1Q01860 360 aaKnown RBP7.96□□□□□ -1.13
USP48-206ENST00000464577 RIPK1Q13546 671 aa7.96□□□□□ -1.13
USP48-206ENST00000464577 LRRC41Q15345 812 aa7.96□□□□□ -1.13
USP48-206ENST00000464577 EDRF1Q3B7T1 1238 aa7.96□□□□□ -1.13
USP48-206ENST00000464577 HYIQ5T013 277 aa7.96□□□□□ -1.13
USP48-206ENST00000464577 MSL1Q68DK7 614 aa7.96□□□□□ -1.13
USP48-206ENST00000464577 DPY19L2P1Q6NXN4 242 aa7.96□□□□□ -1.13
USP48-206ENST00000464577 USP17L1Q7RTZ2 530 aa7.96□□□□□ -1.13
USP48-206ENST00000464577 IRF2BP2Q7Z5L9 587 aa7.96□□□□□ -1.13
USP48-206ENST00000464577 CPLX4Q7Z7G2 160 aa7.96□□□□□ -1.13
USP48-206ENST00000464577 DDX42Q86XP3 938 aaKnown RBP eCLIP7.96□□□□□ -1.13
USP48-206ENST00000464577 TEX11Q8IYF3 940 aa7.96□□□□□ -1.13
USP48-206ENST00000464577 BANK1Q8NDB2 785 aa7.96□□□□□ -1.13
USP48-206ENST00000464577 GLIS3Q8NEA6 775 aa7.96□□□□□ -1.13
USP48-206ENST00000464577 DDX47Q9H0S4 455 aaKnown RBP7.96□□□□□ -1.13
USP48-206ENST00000464577 CCDC134Q9H6E4 229 aa7.96□□□□□ -1.13
USP48-206ENST00000464577 MKNK2Q9HBH9 465 aa7.96□□□□□ -1.13
USP48-206ENST00000464577 PANK4Q9NVE7 773 aa7.96□□□□□ -1.13
USP48-206ENST00000464577 BCCIPQ9P287 314 aaKnown RBP eCLIP7.96□□□□□ -1.13
USP48-206ENST00000464577 NAGPAQ9UK23 515 aa7.96□□□□□ -1.13
USP48-206ENST00000464577 SLC12A4Q9UP95 1085 aa7.96□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 93.1 ms