RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 CD300LDQ6UXZ3 194 aa5.78□□□□□ -1.48
VPS41-210ENST00000462429 KCNN1Q92952 543 aa5.78□□□□□ -1.48
VPS41-210ENST00000462429 SPTLC3Q9NUV7 552 aa5.78□□□□□ -1.48
VPS41-210ENST00000462429 H2AFY2Q9P0M6 372 aaPredicted RBP5.78□□□□□ -1.48
VPS41-210ENST00000462429 PLA2G2DQ9UNK4 145 aa5.78□□□□□ -1.48
VPS41-210ENST00000462429 DVL2O14641 736 aa5.77□□□□□ -1.49
VPS41-210ENST00000462429 ULK1O75385 1050 aa5.77□□□□□ -1.49
VPS41-210ENST00000462429 CYP2C8P10632 490 aa5.77□□□□□ -1.49
VPS41-210ENST00000462429 SLC9A1P19634 815 aa5.77□□□□□ -1.49
VPS41-210ENST00000462429 FNTBP49356 437 aa5.77□□□□□ -1.49
VPS41-210ENST00000462429 SEC23AQ15436 765 aa5.77□□□□□ -1.49
VPS41-210ENST00000462429 B3GNT8Q7Z7M8 397 aa5.77□□□□□ -1.49
VPS41-210ENST00000462429 SPATS2Q86XZ4 545 aaKnown RBP5.77□□□□□ -1.49
VPS41-210ENST00000462429 ZZZ3Q8IYH5 903 aa5.77□□□□□ -1.49
VPS41-210ENST00000462429 SGPP1Q9BX95 441 aa5.77□□□□□ -1.49
VPS41-210ENST00000462429 KCNK12Q9HB15 430 aa5.77□□□□□ -1.49
VPS41-210ENST00000462429 EMC7Q9NPA0 242 aa5.77□□□□□ -1.49
VPS41-210ENST00000462429 TOMM22Q9NS69 142 aa5.77□□□□□ -1.49
VPS41-210ENST00000462429 ALG1L2C9J202 215 aa5.76□□□□□ -1.49
VPS41-210ENST00000462429 GPR39O43194 453 aa5.76□□□□□ -1.49
VPS41-210ENST00000462429 FARP2O94887 1054 aaPredicted RBP5.76□□□□□ -1.49
VPS41-210ENST00000462429 C8BP07358 591 aa5.76□□□□□ -1.49
VPS41-210ENST00000462429 MC3RP41968 323 aa5.76□□□□□ -1.49
VPS41-210ENST00000462429 CDKN1CP49918 316 aaPredicted RBP5.76□□□□□ -1.49
VPS41-210ENST00000462429 DLG4P78352 724 aa5.76□□□□□ -1.49
VPS41-210ENST00000462429 TMPRSS15P98073 1019 aa5.76□□□□□ -1.49
VPS41-210ENST00000462429 CR1LQ2VPA4 569 aa5.76□□□□□ -1.49
VPS41-210ENST00000462429 CD276Q5ZPR3 534 aa5.76□□□□□ -1.49
VPS41-210ENST00000462429 VASNQ6EMK4 673 aa5.76□□□□□ -1.49
VPS41-210ENST00000462429 NME9Q86XW9 330 aa5.76□□□□□ -1.49
VPS41-210ENST00000462429 IGDCC3Q8IVU1 814 aa5.76□□□□□ -1.49
VPS41-210ENST00000462429 PRPF38AQ8NAV1 312 aaKnown RBP5.76□□□□□ -1.49
VPS41-210ENST00000462429 SMARCC2Q8TAQ2 1214 aa5.76□□□□□ -1.49
VPS41-210ENST00000462429 FAM84AQ96KN4 292 aa5.76□□□□□ -1.49
VPS41-210ENST00000462429 ELF4Q99607 663 aaPredicted RBP5.76□□□□□ -1.49
VPS41-210ENST00000462429 ARHGAP28Q9P2N2 729 aa5.76□□□□□ -1.49
VPS41-210ENST00000462429 ASB1Q9Y576 335 aa5.76□□□□□ -1.49
VPS41-210ENST00000462429 LOC100996750A0A140TA64 210 aa5.75□□□□□ -1.49
VPS41-210ENST00000462429 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP5.75□□□□□ -1.49
VPS41-210ENST00000462429 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP5.75□□□□□ -1.49
VPS41-210ENST00000462429 ENO2P09104 434 aaPredicted RBP5.75□□□□□ -1.49
VPS41-210ENST00000462429 HMGB1P09429 215 aaKnown RBP5.75□□□□□ -1.49
VPS41-210ENST00000462429 TMEM253P0C7T8 217 aa5.75□□□□□ -1.49
VPS41-210ENST00000462429 ATF2P15336 505 aa5.75□□□□□ -1.49
VPS41-210ENST00000462429 GLDCP23378 1020 aa5.75□□□□□ -1.49
VPS41-210ENST00000462429 LSP1P33241 339 aa5.75□□□□□ -1.49
VPS41-210ENST00000462429 ID4P47928 161 aa5.75□□□□□ -1.49
VPS41-210ENST00000462429 EPHB3P54753 998 aa5.75□□□□□ -1.49
VPS41-210ENST00000462429 DBPQ10586 325 aaPredicted RBP5.75□□□□□ -1.49
VPS41-210ENST00000462429 FAPQ12884 760 aa5.75□□□□□ -1.49
VPS41-210ENST00000462429 DDB1Q16531 1140 aa5.75□□□□□ -1.49
VPS41-210ENST00000462429 CATSPEREQ5SY80 951 aa5.75□□□□□ -1.49
VPS41-210ENST00000462429 XP32Q5T750 250 aa5.75□□□□□ -1.49
VPS41-210ENST00000462429 GPR158Q5T848 1215 aa5.75□□□□□ -1.49
VPS41-210ENST00000462429 SYDE1Q6ZW31 735 aaPredicted RBP5.75□□□□□ -1.49
VPS41-210ENST00000462429 NECAB2Q7Z6G3 386 aa5.75□□□□□ -1.49
VPS41-210ENST00000462429 FAM26EQ8N5C1 309 aa5.75□□□□□ -1.49
VPS41-210ENST00000462429 HIPK4Q8NE63 616 aa5.75□□□□□ -1.49
VPS41-210ENST00000462429 ASB15Q8WXK1 588 aa5.75□□□□□ -1.49
VPS41-210ENST00000462429 SLC5A5Q92911 643 aa5.75□□□□□ -1.49
VPS41-210ENST00000462429 E2F7Q96AV8 911 aa5.75□□□□□ -1.49
VPS41-210ENST00000462429 GBP4Q96PP9 640 aa5.75□□□□□ -1.49
VPS41-210ENST00000462429 TMEM209Q96SK2 561 aa5.75□□□□□ -1.49
VPS41-210ENST00000462429 PPP1R16BQ96T49 567 aa5.75□□□□□ -1.49
VPS41-210ENST00000462429 KRTAP4-6Q9BYQ5 205 aa5.75□□□□□ -1.49
VPS41-210ENST00000462429 GCM1Q9NP62 436 aa5.75□□□□□ -1.49
VPS41-210ENST00000462429 ETV2O00321 342 aaPredicted RBP5.74□□□□□ -1.49
VPS41-210ENST00000462429 PAX4O43316 350 aa5.74□□□□□ -1.49
VPS41-210ENST00000462429 TGM5O43548 720 aa5.74□□□□□ -1.49
VPS41-210ENST00000462429 MMEP08473 750 aa5.74□□□□□ -1.49
VPS41-210ENST00000462429 IGFBP6P24592 240 aaPredicted RBP5.74□□□□□ -1.49
VPS41-210ENST00000462429 CD40P25942 277 aa5.74□□□□□ -1.49
VPS41-210ENST00000462429 AOAHP28039 575 aa5.74□□□□□ -1.49
VPS41-210ENST00000462429 SESN3P58005 492 aa5.74□□□□□ -1.49
VPS41-210ENST00000462429 PHC1P78364 1004 aa5.74□□□□□ -1.49
VPS41-210ENST00000462429 SMAD3P84022 425 aaKnown RBP5.74□□□□□ -1.49
VPS41-210ENST00000462429 FOXO4P98177 505 aa5.74□□□□□ -1.49
VPS41-210ENST00000462429 ADCY1Q08828 1119 aa5.74□□□□□ -1.49
VPS41-210ENST00000462429 MESP2Q0VG99 397 aa5.74□□□□□ -1.49
VPS41-210ENST00000462429 EPHA7Q15375 998 aa5.74□□□□□ -1.49
VPS41-210ENST00000462429 SMAD2Q15796 467 aaKnown RBP5.74□□□□□ -1.49
VPS41-210ENST00000462429 IQSEC1Q6DN90 963 aa5.74□□□□□ -1.49
VPS41-210ENST00000462429 LHFPL2Q6ZUX7 228 aa5.74□□□□□ -1.49
VPS41-210ENST00000462429 HDGFL2Q7Z4V5 671 aaPredicted RBP5.74□□□□□ -1.49
VPS41-210ENST00000462429 SIGLEC10Q96LC7 697 aa5.74□□□□□ -1.49
VPS41-210ENST00000462429 SLC38A3Q99624 504 aa5.74□□□□□ -1.49
VPS41-210ENST00000462429 DLL4Q9NR61 685 aa5.74□□□□□ -1.49
VPS41-210ENST00000462429 HOMER2Q9NSB8 354 aa5.74□□□□□ -1.49
VPS41-210ENST00000462429 RNF114Q9Y508 228 aa5.74□□□□□ -1.49
VPS41-210ENST00000462429 IRAK3Q9Y616 596 aa5.74□□□□□ -1.49
VPS41-210ENST00000462429 PHLDB1Q86UU1 1377 aa5.73□□□□□ -1.49
VPS41-210ENST00000462429 TCAF2A6NFQ2 919 aa5.73□□□□□ -1.49
VPS41-210ENST00000462429 RASSF10A6NK89 507 aa5.73□□□□□ -1.49
VPS41-210ENST00000462429 ZNF839A8K0R7 811 aa5.73□□□□□ -1.49
VPS41-210ENST00000462429 NFIBO00712 420 aa5.73□□□□□ -1.49
VPS41-210ENST00000462429 RAB11FIP3O75154 756 aa5.73□□□□□ -1.49
VPS41-210ENST00000462429 PTGS1P23219 599 aa5.73□□□□□ -1.49
VPS41-210ENST00000462429 PTX3P26022 381 aaPredicted RBP5.73□□□□□ -1.49
VPS41-210ENST00000462429 GUCY2FP51841 1108 aa5.73□□□□□ -1.49
VPS41-210ENST00000462429 PFKPQ01813 784 aa5.73□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms