RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 RBM43Q6ZSC3 357 aaKnown RBP6.74□□□□□ -1.33
VPS13D-202ENST00000460333 GSDMAQ96QA5 445 aa6.74□□□□□ -1.33
VPS13D-202ENST00000460333 ZCCHC17Q9NP64 241 aaKnown RBP6.74□□□□□ -1.33
VPS13D-202ENST00000460333 NYAP2Q9P242 653 aa6.74□□□□□ -1.33
VPS13D-202ENST00000460333 ARAP2Q8WZ64 1704 aa6.74□□□□□ -1.33
VPS13D-202ENST00000460333 USP27XA6NNY8 438 aa6.74□□□□□ -1.33
VPS13D-202ENST00000460333 EIF3HO15372 352 aaKnown RBP eCLIP6.74□□□□□ -1.336e-7■■■■■ 27.5
VPS13D-202ENST00000460333 TBCAO75347 108 aaKnown RBP6.74□□□□□ -1.33
VPS13D-202ENST00000460333 RAD17O75943 681 aa6.74□□□□□ -1.33
VPS13D-202ENST00000460333 HNRNPH1P31943 449 aaKnown RBP6.74□□□□□ -1.33
VPS13D-202ENST00000460333 COPB1P53618 953 aaKnown RBP6.74□□□□□ -1.33
VPS13D-202ENST00000460333 KCTD16Q68DU8 428 aa6.74□□□□□ -1.33
VPS13D-202ENST00000460333 RSBN1LQ6PCB5 846 aaPredicted RBP6.74□□□□□ -1.33
VPS13D-202ENST00000460333 USP37Q86T82 979 aa6.74□□□□□ -1.33
VPS13D-202ENST00000460333 NME8Q8N427 588 aa6.74□□□□□ -1.33
VPS13D-202ENST00000460333 DAGLBQ8NCG7 672 aa6.74□□□□□ -1.33
VPS13D-202ENST00000460333 SMC1BQ8NDV3 1235 aa6.74□□□□□ -1.33
VPS13D-202ENST00000460333 OXER1Q8TDS5 423 aa6.74□□□□□ -1.33
VPS13D-202ENST00000460333 COG1Q8WTW3 980 aa6.74□□□□□ -1.33
VPS13D-202ENST00000460333 SYMPKQ92797 1274 aaKnown RBP6.74□□□□□ -1.33
VPS13D-202ENST00000460333 AMNQ9BXJ7 453 aa6.74□□□□□ -1.33
VPS13D-202ENST00000460333 MOV10L1Q9BXT6 1211 aaKnown RBP6.74□□□□□ -1.33
VPS13D-202ENST00000460333 ANGPTL2Q9UKU9 493 aa6.74□□□□□ -1.33
VPS13D-202ENST00000460333 PALM3A6NDB9 673 aaPredicted RBP6.74□□□□□ -1.33
VPS13D-202ENST00000460333 USP17L5A8MUK1 530 aa6.74□□□□□ -1.33
VPS13D-202ENST00000460333 GTPBP6O43824 516 aaPredicted RBP6.74□□□□□ -1.33
VPS13D-202ENST00000460333 AKR1B1P15121 316 aa6.74□□□□□ -1.33
VPS13D-202ENST00000460333 RPL13P26373 211 aaKnown RBP6.74□□□□□ -1.33
VPS13D-202ENST00000460333 GGCXP38435 758 aa6.74□□□□□ -1.33
VPS13D-202ENST00000460333 USP14P54578 494 aa6.74□□□□□ -1.33
VPS13D-202ENST00000460333 GUCY2DQ02846 1103 aa6.74□□□□□ -1.33
VPS13D-202ENST00000460333 SEMA3FQ13275 785 aa6.74□□□□□ -1.33
VPS13D-202ENST00000460333 RAPGEF1Q13905 1077 aa6.74□□□□□ -1.33
VPS13D-202ENST00000460333 TTC19Q6DKK2 380 aaPredicted RBP6.74□□□□□ -1.33
VPS13D-202ENST00000460333 SV2BQ7L1I2 683 aa6.74□□□□□ -1.33
VPS13D-202ENST00000460333 GSTA5Q7RTV2 222 aa6.74□□□□□ -1.33
VPS13D-202ENST00000460333 PEX26Q7Z412 305 aa6.74□□□□□ -1.33
VPS13D-202ENST00000460333 NLRP14Q86W24 1093 aa6.74□□□□□ -1.33
VPS13D-202ENST00000460333 FBXO11Q86XK2 927 aa6.74□□□□□ -1.33
VPS13D-202ENST00000460333 ST13P4Q8IZP2 240 aaPredicted RBP6.74□□□□□ -1.33
VPS13D-202ENST00000460333 C3orf20Q8ND61 904 aa6.74□□□□□ -1.33
VPS13D-202ENST00000460333 ENGASEQ8NFI3 743 aa6.74□□□□□ -1.33
VPS13D-202ENST00000460333 ST7Q9NRC1 585 aa6.74□□□□□ -1.33
VPS13D-202ENST00000460333 SBDSQ9Y3A5 250 aaKnown RBP eCLIP6.74□□□□□ -1.33
VPS13D-202ENST00000460333 MAP3K7O43318 606 aa6.73□□□□□ -1.33
VPS13D-202ENST00000460333 NPM3O75607 178 aaKnown RBP6.73□□□□□ -1.33
VPS13D-202ENST00000460333 GNA14O95837 355 aa6.73□□□□□ -1.33
VPS13D-202ENST00000460333 CASP14P31944 242 aa6.73□□□□□ -1.33
VPS13D-202ENST00000460333 PLA2G4AP47712 749 aa6.73□□□□□ -1.33
VPS13D-202ENST00000460333 RHBDL3P58872 404 aa6.73□□□□□ -1.33
VPS13D-202ENST00000460333 RBL2Q08999 1139 aa6.73□□□□□ -1.33
VPS13D-202ENST00000460333 CABP7Q86V35 215 aa6.73□□□□□ -1.33
VPS13D-202ENST00000460333 AGBL3Q8NEM8 1001 aa6.73□□□□□ -1.33
VPS13D-202ENST00000460333 HAUS1Q96CS2 278 aa6.73□□□□□ -1.33
VPS13D-202ENST00000460333 TDRD3Q9H7E2 651 aaKnown RBP6.73□□□□□ -1.33
VPS13D-202ENST00000460333 LRWD1Q9UFC0 647 aa6.73□□□□□ -1.33
VPS13D-202ENST00000460333 FHOD1Q9Y613 1164 aa6.73□□□□□ -1.33
VPS13D-202ENST00000460333 COL1A1P02452 1464 aaPredicted RBP6.73□□□□□ -1.33
VPS13D-202ENST00000460333 GMNCA6NCL1 334 aa6.73□□□□□ -1.33
VPS13D-202ENST00000460333 ZBTB5O15062 677 aa6.73□□□□□ -1.33
VPS13D-202ENST00000460333 HEXIM1O94992 359 aaKnown RBP6.73□□□□□ -1.33
VPS13D-202ENST00000460333 BMP3P12645 472 aa6.73□□□□□ -1.33
VPS13D-202ENST00000460333 EEF1GP26641 437 aaKnown RBP6.73□□□□□ -1.33
VPS13D-202ENST00000460333 ATP2C1P98194 919 aaPredicted RBP6.73□□□□□ -1.33
VPS13D-202ENST00000460333 PLS1Q14651 629 aa6.73□□□□□ -1.33
VPS13D-202ENST00000460333 HAUS3Q68CZ6 603 aa6.73□□□□□ -1.33
VPS13D-202ENST00000460333 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP6.73□□□□□ -1.331e-9■■■■■ 80.2
VPS13D-202ENST00000460333 HVCN1Q96D96 273 aa6.73□□□□□ -1.33
VPS13D-202ENST00000460333 OLFM3Q96PB7 478 aa6.73□□□□□ -1.33
VPS13D-202ENST00000460333 PSMD1Q99460 953 aa6.73□□□□□ -1.33
VPS13D-202ENST00000460333 YIPF3Q9GZM5 350 aa6.73□□□□□ -1.33
VPS13D-202ENST00000460333 MIS12Q9H081 205 aa6.73□□□□□ -1.33
VPS13D-202ENST00000460333 MAD2L2Q9UI95 211 aa6.73□□□□□ -1.33
VPS13D-202ENST00000460333 AKAP11Q9UKA4 1901 aa6.73□□□□□ -1.33
VPS13D-202ENST00000460333 ESYT2A0FGR8 921 aa6.73□□□□□ -1.33
VPS13D-202ENST00000460333 PDE4DQ08499 809 aa6.73□□□□□ -1.33
VPS13D-202ENST00000460333 PTPAQ15257 358 aa6.73□□□□□ -1.33
VPS13D-202ENST00000460333 STAG2Q8N3U4 1231 aa6.73□□□□□ -1.33
VPS13D-202ENST00000460333 FERMT1Q9BQL6 677 aa6.73□□□□□ -1.33
VPS13D-202ENST00000460333 IDI2Q9BXS1 227 aa6.73□□□□□ -1.33
VPS13D-202ENST00000460333 NT5C3AQ9H0P0 336 aa6.73□□□□□ -1.33
VPS13D-202ENST00000460333 TSPYL2Q9H2G4 693 aaPredicted RBP6.73□□□□□ -1.33
VPS13D-202ENST00000460333 SPC25Q9HBM1 224 aa6.73□□□□□ -1.33
VPS13D-202ENST00000460333 FBXO2Q9UK22 296 aaPredicted RBP6.73□□□□□ -1.33
VPS13D-202ENST00000460333 PCDHA5Q9Y5H7 936 aa6.73□□□□□ -1.33
VPS13D-202ENST00000460333 PCDHA1Q9Y5I3 950 aa6.73□□□□□ -1.33
VPS13D-202ENST00000460333 SEC23IPQ9Y6Y8 1000 aaKnown RBP6.73□□□□□ -1.33
VPS13D-202ENST00000460333 KDM3AQ9Y4C1 1321 aa6.73□□□□□ -1.33
VPS13D-202ENST00000460333 I3L4J1 428 aa6.73□□□□□ -1.33
VPS13D-202ENST00000460333 CTNND1O60716 968 aaKnown RBP6.73□□□□□ -1.33
VPS13D-202ENST00000460333 MFAP3LO75121 409 aa6.73□□□□□ -1.33
VPS13D-202ENST00000460333 YY1P25490 414 aa6.73□□□□□ -1.33
VPS13D-202ENST00000460333 PSMD7P51665 324 aa6.73□□□□□ -1.33
VPS13D-202ENST00000460333 IL9RQ01113 521 aa6.73□□□□□ -1.33
VPS13D-202ENST00000460333 ARID5AQ03989 594 aa6.73□□□□□ -1.33
VPS13D-202ENST00000460333 PDCLQ13371 301 aa6.73□□□□□ -1.33
VPS13D-202ENST00000460333 ARID5BQ14865 1188 aa6.73□□□□□ -1.33
VPS13D-202ENST00000460333 SHC4Q6S5L8 630 aa6.73□□□□□ -1.33
VPS13D-202ENST00000460333 SLFN12Q8IYM2 578 aa6.73□□□□□ -1.33
VPS13D-202ENST00000460333 EPN3Q9H201 632 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms