RNA–Protein interactions for RNA: ENST00000452047.1

CPSF4-208, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 3

Gene CPSF4, Length 687 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-208ENST00000452047 TUBE1Q9UJT0 475 aa14.23□□□□□ -0.13
CPSF4-208ENST00000452047 TTC28Q96AY4 2481 aa14.22□□□□□ -0.13
CPSF4-208ENST00000452047 PRRC2BQ5JSZ5 2229 aaKnown RBP14.22□□□□□ -0.13
CPSF4-208ENST00000452047 PPFIA3O75145 1194 aa14.22□□□□□ -0.13
CPSF4-208ENST00000452047 CYP3A4P08684 503 aa14.22□□□□□ -0.13
CPSF4-208ENST00000452047 TAF2Q6P1X5 1199 aa14.22□□□□□ -0.13
CPSF4-208ENST00000452047 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.22□□□□□ -0.13
CPSF4-208ENST00000452047 REXO1Q8N1G1 1221 aaKnown RBP14.22□□□□□ -0.13
CPSF4-208ENST00000452047 CCDC12Q8WUD4 166 aaPredicted RBP14.22□□□□□ -0.13
CPSF4-208ENST00000452047 TM6SF1Q9BZW5 370 aa14.22□□□□□ -0.13
CPSF4-208ENST00000452047 CERS4Q9HA82 394 aa14.22□□□□□ -0.13
CPSF4-208ENST00000452047 C6orf50Q9HD87 102 aa14.22□□□□□ -0.13
CPSF4-208ENST00000452047 PRDM6Q9NQX0 595 aa14.22□□□□□ -0.13
CPSF4-208ENST00000452047 PPP4R2Q9NY27 417 aa14.22□□□□□ -0.13
CPSF4-208ENST00000452047 CYP46A1Q9Y6A2 500 aa14.22□□□□□ -0.13
CPSF4-208ENST00000452047 COL4A6Q14031 1691 aa14.21□□□□□ -0.13
CPSF4-208ENST00000452047 IGKV6D-21A0A0A0MT36 114 aa14.21□□□□□ -0.13
CPSF4-208ENST00000452047 RFXAPO00287 272 aa14.21□□□□□ -0.13
CPSF4-208ENST00000452047 DHX15O43143 795 aaKnown RBP14.21□□□□□ -0.13
CPSF4-208ENST00000452047 ATG7O95352 703 aa14.21□□□□□ -0.13
CPSF4-208ENST00000452047 CCNE2O96020 404 aa14.21□□□□□ -0.13
CPSF4-208ENST00000452047 CHRNA1P02708 482 aa14.21□□□□□ -0.13
CPSF4-208ENST00000452047 POU3F3P20264 500 aaPredicted RBP14.21□□□□□ -0.13
CPSF4-208ENST00000452047 CCT2P78371 535 aaKnown RBP14.21□□□□□ -0.13
CPSF4-208ENST00000452047 MGAT3Q09327 533 aa14.21□□□□□ -0.13
CPSF4-208ENST00000452047 MCTP2Q6DN12 878 aa14.21□□□□□ -0.13
CPSF4-208ENST00000452047 PLPPR4Q7Z2D5 763 aa14.21□□□□□ -0.13
CPSF4-208ENST00000452047 SEPT8Q92599 483 aa14.21□□□□□ -0.13
CPSF4-208ENST00000452047 RAD9AQ99638 391 aa14.21□□□□□ -0.13
CPSF4-208ENST00000452047 ZBED2Q9BTP6 218 aa14.21□□□□□ -0.13
CPSF4-208ENST00000452047 SLC26A6Q9BXS9 759 aa14.21□□□□□ -0.13
CPSF4-208ENST00000452047 UPF3BQ9BZI7 483 aaKnown RBP14.21□□□□□ -0.13
CPSF4-208ENST00000452047 WDR81Q562E7 1941 aa14.21□□□□□ -0.14
CPSF4-208ENST00000452047 LOXHD1Q8IVV2 1947 aa14.2□□□□□ -0.14
CPSF4-208ENST00000452047 INSRRP14616 1297 aa14.2□□□□□ -0.14
CPSF4-208ENST00000452047 GNA11P29992 359 aa14.2□□□□□ -0.14
CPSF4-208ENST00000452047 ZNF76P36508 570 aa14.2□□□□□ -0.14
CPSF4-208ENST00000452047 AKAP17AQ02040 695 aaKnown RBP14.2□□□□□ -0.14
CPSF4-208ENST00000452047 PLCB4Q15147 1175 aa14.2□□□□□ -0.14
CPSF4-208ENST00000452047 ERICH6BQ5W0A0 696 aa14.2□□□□□ -0.14
CPSF4-208ENST00000452047 PLA2G4DQ86XP0 818 aa14.2□□□□□ -0.14
CPSF4-208ENST00000452047 CCDC148Q8NFR7 591 aa14.2□□□□□ -0.14
CPSF4-208ENST00000452047 RASGRP4Q8TDF6 673 aa14.2□□□□□ -0.14
CPSF4-208ENST00000452047 PPM1EQ8WY54 764 aa14.2□□□□□ -0.14
CPSF4-208ENST00000452047 ARNTL2Q8WYA1 636 aa14.2□□□□□ -0.14
CPSF4-208ENST00000452047 ZBTB10Q96DT7 871 aa14.2□□□□□ -0.14
CPSF4-208ENST00000452047 ZNF274Q96GC6 653 aaPredicted RBP14.2□□□□□ -0.14
CPSF4-208ENST00000452047 AZI2Q9H6S1 392 aa14.2□□□□□ -0.14
CPSF4-208ENST00000452047 VPS54Q9P1Q0 977 aa14.2□□□□□ -0.14
CPSF4-208ENST00000452047 MTCH2Q9Y6C9 303 aa14.2□□□□□ -0.14
CPSF4-208ENST00000452047 LOC101059915A0A1B0GWI6 518 aaPredicted RBP14.19□□□□□ -0.14
CPSF4-208ENST00000452047 LINC01553A4QN01 128 aa14.19□□□□□ -0.14
CPSF4-208ENST00000452047 RRN3P2A6NIE6 340 aa14.19□□□□□ -0.14
CPSF4-208ENST00000452047 IPO5O00410 1097 aaKnown RBP14.19□□□□□ -0.14
CPSF4-208ENST00000452047 EDIL3O43854 480 aa14.19□□□□□ -0.14
CPSF4-208ENST00000452047 LPXNO60711 386 aa14.19□□□□□ -0.14
CPSF4-208ENST00000452047 AMHP03971 560 aa14.19□□□□□ -0.14
CPSF4-208ENST00000452047 CIITAP33076 1130 aa14.19□□□□□ -0.14
CPSF4-208ENST00000452047 STAT5BP51692 787 aa14.19□□□□□ -0.14
CPSF4-208ENST00000452047 IGBP1P78318 339 aa14.19□□□□□ -0.14
CPSF4-208ENST00000452047 HTRA4P83105 476 aaPredicted RBP14.19□□□□□ -0.14
CPSF4-208ENST00000452047 SETQ01105 290 aaPredicted RBP14.19□□□□□ -0.14
CPSF4-208ENST00000452047 CCDC85BQ15834 202 aaPredicted RBP14.19□□□□□ -0.14
CPSF4-208ENST00000452047 FAM117BQ6P1L5 589 aa14.19□□□□□ -0.14
CPSF4-208ENST00000452047 ABHD15Q6UXT9 468 aa14.19□□□□□ -0.14
CPSF4-208ENST00000452047 MYOCDQ8IZQ8 938 aa14.19□□□□□ -0.14
CPSF4-208ENST00000452047 BICD2Q8TD16 824 aa14.19□□□□□ -0.14
CPSF4-208ENST00000452047 DNAJB3Q8WWF6 145 aa14.19□□□□□ -0.14
CPSF4-208ENST00000452047 APBB2Q92870 758 aa14.19□□□□□ -0.14
CPSF4-208ENST00000452047 IFIH1Q9BYX4 1025 aaKnown RBP14.19□□□□□ -0.14
CPSF4-208ENST00000452047 SH3GLB2Q9NR46 395 aa14.19□□□□□ -0.14
CPSF4-208ENST00000452047 TRPC6Q9Y210 931 aa14.19□□□□□ -0.14
CPSF4-208ENST00000452047 MYH9P35579 1960 aaKnown RBP14.19□□□□□ -0.14
CPSF4-208ENST00000452047 DDX39AO00148 427 aaKnown RBP14.18□□□□□ -0.14
CPSF4-208ENST00000452047 GHRP10912 638 aa14.18□□□□□ -0.14
CPSF4-208ENST00000452047 SLC26A2P50443 739 aa14.18□□□□□ -0.14
CPSF4-208ENST00000452047 ERVK-21P61565 698 aa14.18□□□□□ -0.14
CPSF4-208ENST00000452047 GRB10Q13322 594 aa14.18□□□□□ -0.14
CPSF4-208ENST00000452047 LPIN1Q14693 890 aa14.18□□□□□ -0.14
CPSF4-208ENST00000452047 KRT40Q6A162 431 aa14.18□□□□□ -0.14
CPSF4-208ENST00000452047 RSPH3Q86UC2 560 aa14.18□□□□□ -0.14
CPSF4-208ENST00000452047 CCDC60Q8IWA6 550 aaPredicted RBP14.18□□□□□ -0.14
CPSF4-208ENST00000452047 SP7Q8TDD2 431 aaPredicted RBP14.18□□□□□ -0.14
CPSF4-208ENST00000452047 TRAPPC12Q8WVT3 735 aa14.18□□□□□ -0.14
CPSF4-208ENST00000452047 TOP1MTQ969P6 601 aa14.18□□□□□ -0.14
CPSF4-208ENST00000452047 LENG9Q96B70 501 aa14.18□□□□□ -0.14
CPSF4-208ENST00000452047 LARP6Q9BRS8 491 aaKnown RBP14.18□□□□□ -0.14
CPSF4-208ENST00000452047 THEGQ9P2T0 379 aa14.18□□□□□ -0.14
CPSF4-208ENST00000452047 INSL6Q9Y581 213 aa14.18□□□□□ -0.14
CPSF4-208ENST00000452047 NLRC5Q86WI3 1866 aa14.18□□□□□ -0.14
CPSF4-208ENST00000452047 RALGAPA2Q2PPJ7 1873 aa14.17□□□□□ -0.14
CPSF4-208ENST00000452047 POTEB3A0JP26 581 aa14.17□□□□□ -0.14
CPSF4-208ENST00000452047 RPLP2P05387 115 aaKnown RBP14.17□□□□□ -0.14
CPSF4-208ENST00000452047 MRPS6P82932 125 aaKnown RBP14.17□□□□□ -0.14
CPSF4-208ENST00000452047 FBXO47Q5MNV8 452 aa14.17□□□□□ -0.14
CPSF4-208ENST00000452047 POTEBQ6S5H4 581 aa14.17□□□□□ -0.14
CPSF4-208ENST00000452047 TRIM22Q8IYM9 498 aa14.17□□□□□ -0.14
CPSF4-208ENST00000452047 MICALL1Q8N3F8 863 aa14.17□□□□□ -0.14
CPSF4-208ENST00000452047 TNPO1Q92973 898 aaKnown RBP14.17□□□□□ -0.14
CPSF4-208ENST00000452047 UIMC1Q96RL1 719 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms