RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 MGARPQ8TDB4 240 aa12.96□□□□□ -0.33
MSH6-204ENST00000445503 GSTTP1A0A1W2PQM5 241 aa12.96□□□□□ -0.33
MSH6-204ENST00000445503 FGGP02679 453 aa12.96□□□□□ -0.33
MSH6-204ENST00000445503 GJC1P36383 396 aa12.96□□□□□ -0.33
MSH6-204ENST00000445503 SLCO1A2P46721 670 aa12.96□□□□□ -0.33
MSH6-204ENST00000445503 IFNAR2P48551 515 aa12.96□□□□□ -0.33
MSH6-204ENST00000445503 C16orf86Q6ZW13 317 aa12.96□□□□□ -0.33
MSH6-204ENST00000445503 WHAMMQ8TF30 809 aa12.96□□□□□ -0.33
MSH6-204ENST00000445503 RASSF10A6NK89 507 aa12.96□□□□□ -0.34
MSH6-204ENST00000445503 CTTNQ14247 550 aaKnown RBP12.96□□□□□ -0.34
MSH6-204ENST00000445503 CCDC174Q6PII3 467 aa12.96□□□□□ -0.34
MSH6-204ENST00000445503 MYH8P13535 1937 aa12.96□□□□□ -0.34
MSH6-204ENST00000445503 DCCP43146 1447 aa12.96□□□□□ -0.34
MSH6-204ENST00000445503 AGPSO00116 658 aa12.95□□□□□ -0.34
MSH6-204ENST00000445503 SART1O43290 800 aaKnown RBP12.95□□□□□ -0.34
MSH6-204ENST00000445503 TMOD1P28289 359 aa12.95□□□□□ -0.34
MSH6-204ENST00000445503 SF3B2Q13435 895 aaKnown RBP12.95□□□□□ -0.34
MSH6-204ENST00000445503 KSR1Q8IVT5 923 aa12.95□□□□□ -0.34
MSH6-204ENST00000445503 LSP1P33241 339 aa12.95□□□□□ -0.34
MSH6-204ENST00000445503 COPB2P35606 906 aa12.95□□□□□ -0.34
MSH6-204ENST00000445503 PDIA5Q14554 519 aa12.95□□□□□ -0.34
MSH6-204ENST00000445503 NAB2Q15742 525 aa12.95□□□□□ -0.34
MSH6-204ENST00000445503 SLC30A10Q6XR72 485 aa12.95□□□□□ -0.34
MSH6-204ENST00000445503 MMS22LQ6ZRQ5 1243 aa12.95□□□□□ -0.34
MSH6-204ENST00000445503 CELF4Q9BZC1 486 aaKnown RBP12.95□□□□□ -0.34
MSH6-204ENST00000445503 JMJD4Q9H9V9 463 aa12.95□□□□□ -0.34
MSH6-204ENST00000445503 FBXL5Q9UKA1 691 aa12.95□□□□□ -0.34
MSH6-204ENST00000445503 ZBTB5O15062 677 aa12.95□□□□□ -0.34
MSH6-204ENST00000445503 SPOPO43791 374 aa12.95□□□□□ -0.34
MSH6-204ENST00000445503 BUB1BO60566 1050 aaPredicted RBP12.95□□□□□ -0.34
MSH6-204ENST00000445503 CDC37Q16543 378 aaPredicted RBP12.95□□□□□ -0.34
MSH6-204ENST00000445503 QRICH1Q2TAL8 776 aa12.95□□□□□ -0.34
MSH6-204ENST00000445503 STXBP4Q6ZWJ1 553 aa12.95□□□□□ -0.34
MSH6-204ENST00000445503 ATP6V1G3Q96LB4 118 aa12.95□□□□□ -0.34
MSH6-204ENST00000445503 CEP63Q96MT8 703 aa12.95□□□□□ -0.34
MSH6-204ENST00000445503 PAIP2Q9BPZ3 127 aaKnown RBP12.95□□□□□ -0.34
MSH6-204ENST00000445503 TTYH3Q9C0H2 523 aa12.95□□□□□ -0.34
MSH6-204ENST00000445503 TAF1DQ9H5J8 278 aaPredicted RBP12.95□□□□□ -0.34
MSH6-204ENST00000445503 KCNK9Q9NPC2 374 aa12.95□□□□□ -0.34
MSH6-204ENST00000445503 RABGAP1Q9Y3P9 1069 aa12.95□□□□□ -0.34
MSH6-204ENST00000445503 PLEKHG2Q9H7P9 1386 aa12.95□□□□□ -0.34
MSH6-204ENST00000445503 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.95□□□□□ -0.34
MSH6-204ENST00000445503 MYO1FO00160 1098 aa12.95□□□□□ -0.34
MSH6-204ENST00000445503 KIF4AO95239 1232 aa12.95□□□□□ -0.34
MSH6-204ENST00000445503 CCDC172P0C7W6 258 aa12.95□□□□□ -0.34
MSH6-204ENST00000445503 CDK17Q00537 523 aa12.95□□□□□ -0.34
MSH6-204ENST00000445503 MKRN4PQ13434 485 aaPredicted RBP12.95□□□□□ -0.34
MSH6-204ENST00000445503 CERKLQ49MI3 558 aaPredicted RBP12.95□□□□□ -0.34
MSH6-204ENST00000445503 TTMPQ5BVD1 217 aa12.95□□□□□ -0.34
MSH6-204ENST00000445503 GPATCH4Q5T3I0 446 aaKnown RBP12.95□□□□□ -0.34
MSH6-204ENST00000445503 MSL1Q68DK7 614 aa12.95□□□□□ -0.34
MSH6-204ENST00000445503 GLYCTKQ8IVS8 523 aa12.95□□□□□ -0.34
MSH6-204ENST00000445503 FAM186BQ8IYM0 893 aa12.95□□□□□ -0.34
MSH6-204ENST00000445503 SYCE1Q8N0S2 351 aa12.95□□□□□ -0.34
MSH6-204ENST00000445503 NAP1L4Q99733 375 aaKnown RBP12.95□□□□□ -0.34
MSH6-204ENST00000445503 JPH2Q9BR39 696 aaPredicted RBP12.95□□□□□ -0.34
MSH6-204ENST00000445503 RGL1Q9NZL6 768 aa12.95□□□□□ -0.34
MSH6-204ENST00000445503 RASAL2Q9UJF2 1139 aa12.95□□□□□ -0.34
MSH6-204ENST00000445503 PTPN22Q9Y2R2 807 aa12.95□□□□□ -0.34
MSH6-204ENST00000445503 THRAP3Q9Y2W1 955 aaKnown RBP12.95□□□□□ -0.34
MSH6-204ENST00000445503 FXR2P51116 673 aaKnown RBP eCLIP12.94□□□□□ -0.344e-7■■■■■ 30.4
MSH6-204ENST00000445503 PCIF1Q9H4Z3 704 aa12.94□□□□□ -0.34
MSH6-204ENST00000445503 NOC2LQ9Y3T9 749 aaKnown RBP12.94□□□□□ -0.34
MSH6-204ENST00000445503 PPP1R37O75864 691 aa12.94□□□□□ -0.34
MSH6-204ENST00000445503 MYBP10242 640 aa12.94□□□□□ -0.34
MSH6-204ENST00000445503 UCHL3P15374 230 aa12.94□□□□□ -0.34
MSH6-204ENST00000445503 GCFC2P16383 781 aaKnown RBP12.94□□□□□ -0.34
MSH6-204ENST00000445503 TAL1P17542 331 aaPredicted RBP12.94□□□□□ -0.34
MSH6-204ENST00000445503 MAGOHP61326 146 aaKnown RBP12.94□□□□□ -0.34
MSH6-204ENST00000445503 KCNMA1Q12791 1236 aa12.94□□□□□ -0.34
MSH6-204ENST00000445503 PNMA8AQ86V59 439 aaPredicted RBP12.94□□□□□ -0.34
MSH6-204ENST00000445503 NLRP14Q86W24 1093 aa12.94□□□□□ -0.34
MSH6-204ENST00000445503 FBXO11Q86XK2 927 aa12.94□□□□□ -0.34
MSH6-204ENST00000445503 SLFN12Q8IYM2 578 aa12.94□□□□□ -0.34
MSH6-204ENST00000445503 CACNA2D3Q8IZS8 1091 aa12.94□□□□□ -0.34
MSH6-204ENST00000445503 ANKS1AQ92625 1134 aa12.94□□□□□ -0.34
MSH6-204ENST00000445503 MAGOHBQ96A72 148 aaKnown RBP12.94□□□□□ -0.34
MSH6-204ENST00000445503 CCT8L2Q96SF2 557 aa12.94□□□□□ -0.34
MSH6-204ENST00000445503 FGFBP2Q9BYJ0 223 aa12.94□□□□□ -0.34
MSH6-204ENST00000445503 TAOK3Q9H2K8 898 aa12.94□□□□□ -0.34
MSH6-204ENST00000445503 DHX36Q9H2U1 1008 aaKnown RBP12.94□□□□□ -0.34
MSH6-204ENST00000445503 SPATA31A1Q5TZJ5 1347 aa12.94□□□□□ -0.34
MSH6-204ENST00000445503 LMTK3Q96Q04 1460 aa12.94□□□□□ -0.34
MSH6-204ENST00000445503 TTI1O43156 1089 aa12.94□□□□□ -0.34
MSH6-204ENST00000445503 NR3C1P04150 777 aa12.94□□□□□ -0.34
MSH6-204ENST00000445503 SERPINB2P05120 415 aa12.94□□□□□ -0.34
MSH6-204ENST00000445503 ZNF543Q08ER8 600 aa12.94□□□□□ -0.34
MSH6-204ENST00000445503 SEMA3FQ13275 785 aa12.94□□□□□ -0.34
MSH6-204ENST00000445503 PPP1R7Q15435 360 aa12.94□□□□□ -0.34
MSH6-204ENST00000445503 CCDC105Q8IYK2 499 aa12.94□□□□□ -0.34
MSH6-204ENST00000445503 RTFDC1Q9BY42 306 aaPredicted RBP12.94□□□□□ -0.34
MSH6-204ENST00000445503 SNX24Q9Y343 169 aa12.94□□□□□ -0.34
MSH6-204ENST00000445503 HMGB1P1B2RPK0 211 aaPredicted RBP12.93□□□□□ -0.34
MSH6-204ENST00000445503 VPS41P49754 854 aa12.93□□□□□ -0.34
MSH6-204ENST00000445503 ICA1Q05084 483 aa12.93□□□□□ -0.34
MSH6-204ENST00000445503 MESDQ14696 234 aa12.93□□□□□ -0.34
MSH6-204ENST00000445503 KNOP1Q1ED39 458 aaKnown RBP12.93□□□□□ -0.34
MSH6-204ENST00000445503 FAM178BQ8IXR5 827 aa12.93□□□□□ -0.34
MSH6-204ENST00000445503 BAP1Q92560 729 aa12.93□□□□□ -0.34
MSH6-204ENST00000445503 PBKQ96KB5 322 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms