RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 TRPC5Q9UL62 973 aaPredicted RBP7.7□□□□□ -1.18
VPS53-204ENST00000437048 ABCA8O94911 1581 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 POTEMA6NI47 508 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 TMEM110-MUSTN1A8MSY1 372 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 LDHBP07195 334 aaKnown RBP7.7□□□□□ -1.18
VPS53-204ENST00000437048 CPA1P15085 419 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 FBXO38Q6PIJ6 1188 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 POTEHQ6S545 545 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 POTEGQ6S5H5 508 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 C16orf89Q6UX73 402 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 ABTB1Q969K4 478 aaPredicted RBP7.7□□□□□ -1.18
VPS53-204ENST00000437048 BICC1Q9H694 974 aaKnown RBP7.7□□□□□ -1.18
VPS53-204ENST00000437048 SUFUQ9UMX1 484 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 CSTF3Q12996 717 aaKnown RBP7.7□□□□□ -1.18
VPS53-204ENST00000437048 TP53BP2Q13625 1128 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 FAR2Q96K12 515 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 ATAD3AQ9NVI7 634 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 TBC1D7Q9P0N9 293 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 ST13P50502 369 aaKnown RBP7.7□□□□□ -1.18
VPS53-204ENST00000437048 PROSER2Q86WR7 435 aaPredicted RBP7.7□□□□□ -1.18
VPS53-204ENST00000437048 TRMT44Q8IYL2 757 aaKnown RBP7.7□□□□□ -1.18
VPS53-204ENST00000437048 WDR60Q8WVS4 1066 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 NAF1Q96HR8 494 aaKnown RBP7.7□□□□□ -1.18
VPS53-204ENST00000437048 RAD21L1Q9H4I0 556 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 ATG3Q9NT62 314 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 SEL1LQ9UBV2 794 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 TSC22D4Q9Y3Q8 395 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 SNX14Q9Y5W7 946 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 LIN7AO14910 233 aaPredicted RBP7.7□□□□□ -1.18
VPS53-204ENST00000437048 KIAA0391O15091 583 aaKnown RBP7.7□□□□□ -1.18
VPS53-204ENST00000437048 HAUS5O94927 633 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 BHMT2Q9H2M3 363 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 UTP6Q9NYH9 597 aaKnown RBP7.7□□□□□ -1.18
VPS53-204ENST00000437048 HGSO14964 777 aaPredicted RBP7.7□□□□□ -1.18
VPS53-204ENST00000437048 NVLO15381 856 aaKnown RBP7.7□□□□□ -1.18
VPS53-204ENST00000437048 RASA3Q14644 834 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 TMC4Q7Z404 712 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 NDUFAF2Q8N183 169 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 TRPC4APQ8TEL6 797 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 MAGEA13PA6NCF6 341 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 GSTA4O15217 222 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 CBFA2T3O75081 653 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 RPN1P04843 607 aaKnown RBP7.7□□□□□ -1.18
VPS53-204ENST00000437048 HIC1Q14526 733 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 NLRX1Q86UT6 975 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 DCLRE1BQ9H816 532 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 YTHDF3Q7Z739 585 aaKnown RBP7.7□□□□□ -1.18
VPS53-204ENST00000437048 C16orf71Q8IYS4 520 aaPredicted RBP7.7□□□□□ -1.18
VPS53-204ENST00000437048 ZNF555Q8NEP9 628 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 PLEKHA4Q9H4M7 779 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 PLCH2O75038 1416 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 KRT6AP02538 564 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 KRT6BP04259 564 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 KRT6CP48668 564 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 TAB1Q15750 504 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 KHDRBS2Q5VWX1 349 aaKnown RBP7.7□□□□□ -1.18
VPS53-204ENST00000437048 DDHD1Q8NEL9 900 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 ZFP69BQ9UJL9 534 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 WDR17Q8IZU2 1322 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 POTEFA5A3E0 1075 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 HNRNPCL2B2RXH8 293 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 CTIFO43310 598 aaKnown RBP7.7□□□□□ -1.18
VPS53-204ENST00000437048 ANXA1P04083 346 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 POTEIP0CG38 1075 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 POTEEQ6S8J3 1075 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 ACRBPQ8NEB7 543 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.7□□□□□ -1.18
VPS53-204ENST00000437048 WDR11Q9BZH6 1224 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 USP14P54578 494 aa7.69□□□□□ -1.18
VPS53-204ENST00000437048 NEK10Q6ZWH5 1172 aa7.69□□□□□ -1.18
VPS53-204ENST00000437048 MRPL48Q96GC5 212 aaKnown RBP7.69□□□□□ -1.18
VPS53-204ENST00000437048 DKK3Q9UBP4 350 aa7.69□□□□□ -1.18
VPS53-204ENST00000437048 GPATCH8Q9UKJ3 1502 aaKnown RBP7.69□□□□□ -1.18
VPS53-204ENST00000437048 CCNT1O60563 726 aaKnown RBP7.69□□□□□ -1.18
VPS53-204ENST00000437048 ZNF354CQ86Y25 554 aa7.69□□□□□ -1.18
VPS53-204ENST00000437048 PCYOX1LQ8NBM8 494 aa7.69□□□□□ -1.18
VPS53-204ENST00000437048 SLC5A4Q9NY91 659 aa7.69□□□□□ -1.18
VPS53-204ENST00000437048 MTMR6Q9Y217 621 aa7.69□□□□□ -1.18
VPS53-204ENST00000437048 SMCO2A6NFE2 343 aa7.69□□□□□ -1.18
VPS53-204ENST00000437048 TNPO2O14787 897 aaKnown RBP7.69□□□□□ -1.18
VPS53-204ENST00000437048 DMP1Q13316 513 aaPredicted RBP7.69□□□□□ -1.18
VPS53-204ENST00000437048 CEP44Q9C0F1 390 aa7.69□□□□□ -1.18
VPS53-204ENST00000437048 LIFRP42702 1097 aa7.69□□□□□ -1.18
VPS53-204ENST00000437048 TUBA3CQ13748 450 aa7.69□□□□□ -1.18
VPS53-204ENST00000437048 FAM26FQ5R3K3 315 aa7.69□□□□□ -1.18
VPS53-204ENST00000437048 ZBTB8OSQ8IWT0 167 aa7.69□□□□□ -1.18
VPS53-204ENST00000437048 KRT7P08729 469 aa7.69□□□□□ -1.18
VPS53-204ENST00000437048 GUCY2FP51841 1108 aa7.69□□□□□ -1.18
VPS53-204ENST00000437048 FAM178BQ8IXR5 827 aa7.69□□□□□ -1.18
VPS53-204ENST00000437048 CASP10Q92851 521 aa7.69□□□□□ -1.18
VPS53-204ENST00000437048 LIMA1Q9UHB6 759 aaKnown RBP7.69□□□□□ -1.18
VPS53-204ENST00000437048 ARHGEF11O15085 1522 aa7.69□□□□□ -1.18
VPS53-204ENST00000437048 ITIH6Q6UXX5 1313 aa7.69□□□□□ -1.18
VPS53-204ENST00000437048 SAMD9Q5K651 1589 aa7.69□□□□□ -1.18
VPS53-204ENST00000437048 OR52Z1P0C646 297 aa7.69□□□□□ -1.18
VPS53-204ENST00000437048 PPP6R3Q5H9R7 873 aaPredicted RBP7.69□□□□□ -1.18
VPS53-204ENST00000437048 PRR23CQ6ZRP0 262 aa7.69□□□□□ -1.18
VPS53-204ENST00000437048 NT5C1BQ96P26 610 aa7.69□□□□□ -1.18
VPS53-204ENST00000437048 LSG1Q9H089 658 aaKnown RBP7.69□□□□□ -1.18
VPS53-204ENST00000437048 EPB41L5Q9HCM4 733 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms