RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 CHST13Q8NET6 341 aa23.45■■□□□ 1.35
PTPRF-207ENST00000436724 SLC10A4Q96EP9 437 aa23.45■■□□□ 1.35
PTPRF-207ENST00000436724 TXNRD2Q9NNW7 524 aa23.45■■□□□ 1.35
PTPRF-207ENST00000436724 CNMDO75829 334 aa23.45■■□□□ 1.34
PTPRF-207ENST00000436724 COPB1P53618 953 aaKnown RBP23.45■■□□□ 1.34
PTPRF-207ENST00000436724 FSTL1Q12841 308 aa23.45■■□□□ 1.34
PTPRF-207ENST00000436724 SPECC1LQ69YQ0 1117 aa23.45■■□□□ 1.34
PTPRF-207ENST00000436724 THAP9Q9H5L6 903 aa23.45■■□□□ 1.34
PTPRF-207ENST00000436724 TBC1D22BQ9NU19 505 aa23.45■■□□□ 1.34
PTPRF-207ENST00000436724 SKILP12757 684 aa23.44■■□□□ 1.34
PTPRF-207ENST00000436724 SPAG1Q07617 926 aa23.44■■□□□ 1.34
PTPRF-207ENST00000436724 GPAT2Q6NUI2 795 aa23.44■■□□□ 1.34
PTPRF-207ENST00000436724 INPP4AQ96PE3 977 aaPredicted RBP23.44■■□□□ 1.34
PTPRF-207ENST00000436724 KIAA1217Q5T5P2 1943 aa23.44■■□□□ 1.34
PTPRF-207ENST00000436724 N4BP3O15049 544 aa23.44■■□□□ 1.34
PTPRF-207ENST00000436724 NKRFO15226 690 aaKnown RBP eCLIP23.44■■□□□ 1.342e-6■■□□□ 12.9
PTPRF-207ENST00000436724 SFPQP23246 707 aaKnown RBP eCLIP23.44■■□□□ 1.343e-6■■□□□ 13
PTPRF-207ENST00000436724 XRRA1Q6P2D8 792 aa23.44■■□□□ 1.34
PTPRF-207ENST00000436724 MYOCDQ8IZQ8 938 aa23.44■■□□□ 1.34
PTPRF-207ENST00000436724 NACC1Q96RE7 527 aa23.44■■□□□ 1.34
PTPRF-207ENST00000436724 MOV10L1Q9BXT6 1211 aaKnown RBP23.44■■□□□ 1.34
PTPRF-207ENST00000436724 SFI1A8K8P3 1242 aa23.43■■□□□ 1.34
PTPRF-207ENST00000436724 CCNE2O96020 404 aa23.43■■□□□ 1.34
PTPRF-207ENST00000436724 CASP5P51878 434 aa23.43■■□□□ 1.34
PTPRF-207ENST00000436724 MKRN3Q13064 507 aaKnown RBP23.43■■□□□ 1.34
PTPRF-207ENST00000436724 FILIP1LQ4L180 1135 aa23.43■■□□□ 1.34
PTPRF-207ENST00000436724 SFR1Q86XK3 245 aa23.43■■□□□ 1.34
PTPRF-207ENST00000436724 TBX2Q13207 712 aaPredicted RBP23.42■■□□□ 1.34
PTPRF-207ENST00000436724 NELFCDQ8IXH7 590 aa23.42■■□□□ 1.34
PTPRF-207ENST00000436724 CCDC150Q8NCX0 1101 aa23.42■■□□□ 1.34
PTPRF-207ENST00000436724 RBPJLQ9UBG7 517 aa23.42■■□□□ 1.34
PTPRF-207ENST00000436724 PBX1P40424 430 aa23.42■■□□□ 1.34
PTPRF-207ENST00000436724 Q3C1V9 767 aa23.42■■□□□ 1.34
PTPRF-207ENST00000436724 C1orf186Q6ZWK4 172 aa23.42■■□□□ 1.34
PTPRF-207ENST00000436724 FASTKD5Q7L8L6 764 aaKnown RBP23.42■■□□□ 1.34
PTPRF-207ENST00000436724 TRMT1LQ7Z2T5 733 aaKnown RBP23.42■■□□□ 1.34
PTPRF-207ENST00000436724 KCTD17Q8N5Z5 321 aa23.42■■□□□ 1.34
PTPRF-207ENST00000436724 ANKRD20A12PQ8NF67 263 aa23.42■■□□□ 1.34
PTPRF-207ENST00000436724 SCFD1Q8WVM8 642 aa23.42■■□□□ 1.34
PTPRF-207ENST00000436724 GPRASP2Q96D09 838 aa23.42■■□□□ 1.34
PTPRF-207ENST00000436724 P4HBP07237 508 aaKnown RBP23.41■■□□□ 1.34
PTPRF-207ENST00000436724 ERCC3P19447 782 aa23.41■■□□□ 1.34
PTPRF-207ENST00000436724 UGCGQ16739 394 aa23.41■■□□□ 1.34
PTPRF-207ENST00000436724 CEP135Q66GS9 1140 aa23.41■■□□□ 1.34
PTPRF-207ENST00000436724 TSC1Q92574 1164 aa23.41■■□□□ 1.34
PTPRF-207ENST00000436724 MAP7D2Q96T17 732 aa23.41■■□□□ 1.34
PTPRF-207ENST00000436724 TELO2Q9Y4R8 837 aa23.41■■□□□ 1.34
PTPRF-207ENST00000436724 SORBS3O60504 671 aa23.41■■□□□ 1.34
PTPRF-207ENST00000436724 MUTP22033 750 aa23.41■■□□□ 1.34
PTPRF-207ENST00000436724 EEF1GP26641 437 aaKnown RBP23.41■■□□□ 1.34
PTPRF-207ENST00000436724 SNAPC2Q13487 334 aa23.41■■□□□ 1.34
PTPRF-207ENST00000436724 NLRX1Q86UT6 975 aa23.41■■□□□ 1.34
PTPRF-207ENST00000436724 CNOT6LQ96LI5 555 aaKnown RBP23.41■■□□□ 1.34
PTPRF-207ENST00000436724 SH2D3AQ9BRG2 576 aa23.41■■□□□ 1.34
PTPRF-207ENST00000436724 MAGEC2Q9UBF1 373 aaPredicted RBP23.41■■□□□ 1.34
PTPRF-207ENST00000436724 DOCK5Q9H7D0 1870 aa23.41■■□□□ 1.34
PTPRF-207ENST00000436724 NEK9Q8TD19 979 aa23.4■■□□□ 1.34
PTPRF-207ENST00000436724 NOC3LQ8WTT2 800 aaKnown RBP23.4■■□□□ 1.34
PTPRF-207ENST00000436724 ZSWIM4Q9H7M6 989 aa23.4■■□□□ 1.34
PTPRF-207ENST00000436724 FBXO40Q9UH90 709 aa23.4■■□□□ 1.34
PTPRF-207ENST00000436724 TMEM150BA6NC51 233 aa23.4■■□□□ 1.34
PTPRF-207ENST00000436724 CYP2C8P10632 490 aa23.4■■□□□ 1.34
PTPRF-207ENST00000436724 KCNA2P16389 499 aa23.4■■□□□ 1.34
PTPRF-207ENST00000436724 ADKP55263 362 aaKnown RBP23.4■■□□□ 1.34
PTPRF-207ENST00000436724 UBE2Q2Q8WVN8 375 aa23.4■■□□□ 1.34
PTPRF-207ENST00000436724 PFASO15067 1338 aa23.39■■□□□ 1.34
PTPRF-207ENST00000436724 PES1O00541 588 aaKnown RBP23.39■■□□□ 1.33
PTPRF-207ENST00000436724 TBCAO75347 108 aaKnown RBP23.39■■□□□ 1.33
PTPRF-207ENST00000436724 QARSP47897 775 aaKnown RBP23.39■■□□□ 1.33
PTPRF-207ENST00000436724 LRRC63Q05C16 580 aa23.39■■□□□ 1.33
PTPRF-207ENST00000436724 ZCWPW2Q504Y3 356 aa23.39■■□□□ 1.33
PTPRF-207ENST00000436724 TUBGCP2Q9BSJ2 902 aa23.39■■□□□ 1.33
PTPRF-207ENST00000436724 SP4Q02446 784 aa23.38■■□□□ 1.33
PTPRF-207ENST00000436724 DNERQ8NFT8 737 aa23.38■■□□□ 1.33
PTPRF-207ENST00000436724 MYBP10242 640 aa23.38■■□□□ 1.33
PTPRF-207ENST00000436724 PRKCSHP14314 528 aaPredicted RBP23.38■■□□□ 1.33
PTPRF-207ENST00000436724 OSBPP22059 807 aa23.38■■□□□ 1.33
PTPRF-207ENST00000436724 ALDH5A1P51649 535 aaPredicted RBP23.38■■□□□ 1.33
PTPRF-207ENST00000436724 KRT76Q01546 638 aa23.38■■□□□ 1.33
PTPRF-207ENST00000436724 UBXN1Q04323 297 aa23.38■■□□□ 1.33
PTPRF-207ENST00000436724 LRRC55Q6ZSA7 311 aa23.38■■□□□ 1.33
PTPRF-207ENST00000436724 CPLX3Q8WVH0 158 aa23.38■■□□□ 1.33
PTPRF-207ENST00000436724 TCEAL9Q9UHQ7 104 aa23.38■■□□□ 1.33
PTPRF-207ENST00000436724 ARHGEF35A5YM69 484 aa23.37■■□□□ 1.33
PTPRF-207ENST00000436724 SOWAHBA6NEL2 793 aa23.37■■□□□ 1.33
PTPRF-207ENST00000436724 WDR64B1ANS9 1081 aa23.37■■□□□ 1.33
PTPRF-207ENST00000436724 POTEB2H3BUK9 544 aa23.37■■□□□ 1.33
PTPRF-207ENST00000436724 MAFGO15525 162 aa23.37■■□□□ 1.33
PTPRF-207ENST00000436724 SP2Q02086 613 aa23.37■■□□□ 1.33
PTPRF-207ENST00000436724 STXBP2Q15833 593 aa23.37■■□□□ 1.33
PTPRF-207ENST00000436724 TC2NQ8N9U0 490 aa23.37■■□□□ 1.33
PTPRF-207ENST00000436724 IWS1Q96ST2 819 aa23.37■■□□□ 1.33
PTPRF-207ENST00000436724 KCTD10Q9H3F6 313 aa23.37■■□□□ 1.33
PTPRF-207ENST00000436724 MRPL44Q9H9J2 332 aaKnown RBP23.37■■□□□ 1.33
PTPRF-207ENST00000436724 COL4A3BPQ9Y5P4 624 aa23.37■■□□□ 1.33
PTPRF-207ENST00000436724 B4DLN1 442 aa23.37■■□□□ 1.33
PTPRF-207ENST00000436724 PGK2P07205 417 aa23.37■■□□□ 1.33
PTPRF-207ENST00000436724 UTP14CQ5TAP6 766 aaKnown RBP23.37■■□□□ 1.33
PTPRF-207ENST00000436724 MAEAQ7L5Y9 396 aa23.37■■□□□ 1.33
PTPRF-207ENST00000436724 MAF1Q9H063 256 aa23.37■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms