RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 TRPA1O75762 1119 aa16.6■□□□□ 0.25
PTPRF-206ENST00000429895 SLMAPQ14BN4 828 aa16.6■□□□□ 0.25
PTPRF-206ENST00000429895 GINM1Q9NU53 330 aa16.6■□□□□ 0.25
PTPRF-206ENST00000429895 MMP1P03956 469 aa16.59■□□□□ 0.25
PTPRF-206ENST00000429895 MAP4K1Q92918 833 aa16.59■□□□□ 0.25
PTPRF-206ENST00000429895 AP1M1Q9BXS5 423 aa16.59■□□□□ 0.25
PTPRF-206ENST00000429895 BLMP54132 1417 aaPredicted RBP16.59■□□□□ 0.25
PTPRF-206ENST00000429895 PGRMC1O00264 195 aaKnown RBP16.59■□□□□ 0.25
PTPRF-206ENST00000429895 PDCD7Q8N8D1 485 aaKnown RBP16.59■□□□□ 0.25
PTPRF-206ENST00000429895 CCDC197Q8NCU1 140 aa16.59■□□□□ 0.25
PTPRF-206ENST00000429895 RGS12O14924 1447 aa16.59■□□□□ 0.25
PTPRF-206ENST00000429895 ERBB4Q15303 1308 aa16.59■□□□□ 0.25
PTPRF-206ENST00000429895 ZBED1O96006 694 aa16.59■□□□□ 0.25
PTPRF-206ENST00000429895 CDK8P49336 464 aa16.59■□□□□ 0.25
PTPRF-206ENST00000429895 KIAA0556O60303 1618 aa16.59■□□□□ 0.25
PTPRF-206ENST00000429895 K7ERI5 159 aa16.59■□□□□ 0.25
PTPRF-206ENST00000429895 IFT88Q13099 833 aa16.59■□□□□ 0.25
PTPRF-206ENST00000429895 C11orf57Q6ZUT1 292 aaPredicted RBP16.59■□□□□ 0.25
PTPRF-206ENST00000429895 TMC4Q7Z404 712 aa16.59■□□□□ 0.25
PTPRF-206ENST00000429895 NSUN7Q8NE18 718 aaKnown RBP16.59■□□□□ 0.25
PTPRF-206ENST00000429895 FBXL13Q8NEE6 735 aa16.59■□□□□ 0.25
PTPRF-206ENST00000429895 EIF4A3P38919 411 aaKnown RBP16.59■□□□□ 0.25
PTPRF-206ENST00000429895 MRFAP1L1Q96HT8 127 aa16.59■□□□□ 0.25
PTPRF-206ENST00000429895 SOWAHDA6NJG2 315 aa16.58■□□□□ 0.25
PTPRF-206ENST00000429895 PSMA2P25787 234 aa16.58■□□□□ 0.25
PTPRF-206ENST00000429895 KPNA2P52292 529 aaKnown RBP16.58■□□□□ 0.25
PTPRF-206ENST00000429895 FKBP3Q00688 224 aaKnown RBP16.58■□□□□ 0.25
PTPRF-206ENST00000429895 FAM133BQ5BKY9 247 aaKnown RBP16.58■□□□□ 0.25
PTPRF-206ENST00000429895 TRMT10CQ7L0Y3 403 aaKnown RBP16.58■□□□□ 0.25
PTPRF-206ENST00000429895 SCN4BQ8IWT1 228 aa16.58■□□□□ 0.25
PTPRF-206ENST00000429895 CCDC138Q96M89 665 aa16.58■□□□□ 0.25
PTPRF-206ENST00000429895 NHEJ1Q9H9Q4 299 aaPredicted RBP16.58■□□□□ 0.25
PTPRF-206ENST00000429895 PRDM5Q9NQX1 630 aaPredicted RBP16.58■□□□□ 0.25
PTPRF-206ENST00000429895 SYNDIG1LA6NDD5 238 aa16.58■□□□□ 0.24
PTPRF-206ENST00000429895 FBXW4P57775 412 aa16.58■□□□□ 0.24
PTPRF-206ENST00000429895 ART3Q13508 389 aa16.58■□□□□ 0.24
PTPRF-206ENST00000429895 SLC27A3Q5K4L6 730 aa16.58■□□□□ 0.24
PTPRF-206ENST00000429895 ERICH1Q86X53 443 aa16.58■□□□□ 0.24
PTPRF-206ENST00000429895 TRIM42Q8IWZ5 723 aa16.58■□□□□ 0.24
PTPRF-206ENST00000429895 PIGOQ8TEQ8 1089 aa16.58■□□□□ 0.24
PTPRF-206ENST00000429895 PYCARDQ9ULZ3 195 aa16.58■□□□□ 0.24
PTPRF-206ENST00000429895 F5H423 210 aaPredicted RBP16.58■□□□□ 0.24
PTPRF-206ENST00000429895 SH2B2O14492 632 aaPredicted RBP16.58■□□□□ 0.24
PTPRF-206ENST00000429895 ESRRBO95718 433 aa16.58■□□□□ 0.24
PTPRF-206ENST00000429895 PPP6R3Q5H9R7 873 aaPredicted RBP16.58■□□□□ 0.24
PTPRF-206ENST00000429895 BANK1Q8NDB2 785 aa16.58■□□□□ 0.24
PTPRF-206ENST00000429895 ZBBXA8MT70 800 aa16.58■□□□□ 0.24
PTPRF-206ENST00000429895 DHX9Q08211 1270 aaKnown RBP16.58■□□□□ 0.24
PTPRF-206ENST00000429895 RASIP1Q5U651 963 aa16.58■□□□□ 0.24
PTPRF-206ENST00000429895 SAMSN1Q9NSI8 373 aaKnown RBP16.58■□□□□ 0.24
PTPRF-206ENST00000429895 INTUQ9ULD6 942 aa16.58■□□□□ 0.24
PTPRF-206ENST00000429895 ATP7AQ04656 1500 aa16.58■□□□□ 0.24
PTPRF-206ENST00000429895 TMEM94Q12767 1356 aa16.57■□□□□ 0.24
PTPRF-206ENST00000429895 HNRNPCL2B2RXH8 293 aa16.57■□□□□ 0.24
PTPRF-206ENST00000429895 HNRNPCL1O60812 293 aaKnown RBP16.57■□□□□ 0.24
PTPRF-206ENST00000429895 ELMSAN1Q6PJG2 1045 aa16.57■□□□□ 0.24
PTPRF-206ENST00000429895 THEM5Q8N1Q8 247 aa16.57■□□□□ 0.24
PTPRF-206ENST00000429895 FAM81BQ96LP2 452 aa16.57■□□□□ 0.24
PTPRF-206ENST00000429895 NGRNQ9NPE2 291 aaKnown RBP16.57■□□□□ 0.24
PTPRF-206ENST00000429895 ARHGEF12Q9NZN5 1544 aa16.57■□□□□ 0.24
PTPRF-206ENST00000429895 GCKP35557 465 aa16.57■□□□□ 0.24
PTPRF-206ENST00000429895 SNCBQ16143 134 aa16.57■□□□□ 0.24
PTPRF-206ENST00000429895 FAM160B2Q86V87 743 aa16.57■□□□□ 0.24
PTPRF-206ENST00000429895 CDC23Q9UJX2 597 aa16.57■□□□□ 0.24
PTPRF-206ENST00000429895 JRKLQ9Y4A0 524 aa16.57■□□□□ 0.24
PTPRF-206ENST00000429895 PCDHB6Q9Y5E3 794 aa16.57■□□□□ 0.24
PTPRF-206ENST00000429895 CFAP65Q6ZU64 1925 aaKnown RBP16.57■□□□□ 0.24
PTPRF-206ENST00000429895 FRA10AC1Q70Z53 315 aa16.57■□□□□ 0.24
PTPRF-206ENST00000429895 ZSWIM5Q9P217 1185 aa16.57■□□□□ 0.24
PTPRF-206ENST00000429895 TSR3Q9UJK0 312 aaKnown RBP16.57■□□□□ 0.24
PTPRF-206ENST00000429895 PNMA6FA0A0J9YX94 578 aa16.57■□□□□ 0.24
PTPRF-206ENST00000429895 GH2P01242 217 aa16.57■□□□□ 0.24
PTPRF-206ENST00000429895 EEF1B2P24534 225 aaKnown RBP16.57■□□□□ 0.24
PTPRF-206ENST00000429895 NLRP10Q86W26 655 aa16.57■□□□□ 0.24
PTPRF-206ENST00000429895 ELMOD1Q8N336 334 aa16.57■□□□□ 0.24
PTPRF-206ENST00000429895 MAML1Q92585 1016 aa16.57■□□□□ 0.24
PTPRF-206ENST00000429895 FAF2Q96CS3 445 aa16.57■□□□□ 0.24
PTPRF-206ENST00000429895 RAVER2Q9HCJ3 691 aaKnown RBP16.57■□□□□ 0.24
PTPRF-206ENST00000429895 A0A1W2PQ27 194 aa16.57■□□□□ 0.24
PTPRF-206ENST00000429895 A0A1W2PQ64 194 aa16.57■□□□□ 0.24
PTPRF-206ENST00000429895 A0A1W2PQD8 194 aa16.57■□□□□ 0.24
PTPRF-206ENST00000429895 CIITAP33076 1130 aa16.57■□□□□ 0.24
PTPRF-206ENST00000429895 KIF23Q02241 960 aaPredicted RBP16.57■□□□□ 0.24
PTPRF-206ENST00000429895 KIF19Q2TAC6 998 aa16.57■□□□□ 0.24
PTPRF-206ENST00000429895 GDAQ9Y2T3 454 aa16.57■□□□□ 0.24
PTPRF-206ENST00000429895 SUGT1Q9Y2Z0 365 aa16.57■□□□□ 0.24
PTPRF-206ENST00000429895 INSRP06213 1382 aa16.56■□□□□ 0.24
PTPRF-206ENST00000429895 EXOC1LA0A1B0GW35 172 aa16.56■□□□□ 0.24
PTPRF-206ENST00000429895 NPR1P16066 1061 aa16.56■□□□□ 0.24
PTPRF-206ENST00000429895 OCRLQ01968 901 aa16.56■□□□□ 0.24
PTPRF-206ENST00000429895 FAM83BQ5T0W9 1011 aa16.56■□□□□ 0.24
PTPRF-206ENST00000429895 C2orf69Q8N8R5 385 aa16.56■□□□□ 0.24
PTPRF-206ENST00000429895 PTPRTO14522 1441 aa16.56■□□□□ 0.24
PTPRF-206ENST00000429895 PI4K2BG5E9Z4 385 aa16.56■□□□□ 0.24
PTPRF-206ENST00000429895 TTI1O43156 1089 aa16.56■□□□□ 0.24
PTPRF-206ENST00000429895 PASD1Q8IV76 773 aa16.56■□□□□ 0.24
PTPRF-206ENST00000429895 TTLL6Q8N841 843 aa16.56■□□□□ 0.24
PTPRF-206ENST00000429895 OSBP2Q969R2 916 aa16.56■□□□□ 0.24
PTPRF-206ENST00000429895 ZNF668Q96K58 619 aaPredicted RBP16.56■□□□□ 0.24
PTPRF-206ENST00000429895 PIH1D3Q9NQM4 214 aaKnown RBP16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms