RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 VAV2P52735 878 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 LRRC63Q05C16 580 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 TTLL12Q14166 644 aaPredicted RBP11.79□□□□□ -0.52
CUX1-205ENST00000425244 CDC37Q16543 378 aaPredicted RBP11.79□□□□□ -0.52
CUX1-205ENST00000425244 QRICH1Q2TAL8 776 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 PPP1R18Q6NYC8 613 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 CCDC174Q6PII3 467 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 LRRC55Q6ZSA7 311 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 ANKRD13CQ8N6S4 541 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 GMCL1P1Q8NEA9 526 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 PSMB7Q99436 277 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 HINFPQ9BQA5 517 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 LRRC27Q9C0I9 530 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 GBP3Q9H0R5 595 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 PICK1Q9NRD5 415 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 BMP2KQ9NSY1 1161 aaPredicted RBP11.79□□□□□ -0.52
CUX1-205ENST00000425244 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.79□□□□□ -0.52
CUX1-205ENST00000425244 VPS18Q9P253 973 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 ARHGAP20Q9P2F6 1191 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 L1RE1Q9UN81 338 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 PCDHA1Q9Y5I3 950 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 ZHX2Q9Y6X8 837 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 POTEB3A0JP26 581 aa11.78□□□□□ -0.52
CUX1-205ENST00000425244 POTECB2RU33 542 aa11.78□□□□□ -0.52
CUX1-205ENST00000425244 CTNND1O60716 968 aaKnown RBP11.78□□□□□ -0.52
CUX1-205ENST00000425244 N4BP1O75113 896 aaKnown RBP11.78□□□□□ -0.52
CUX1-205ENST00000425244 KRT18P05783 430 aaKnown RBP11.78□□□□□ -0.52
CUX1-205ENST00000425244 POTEIP0CG38 1075 aa11.78□□□□□ -0.52
CUX1-205ENST00000425244 POTEJP0CG39 1038 aa11.78□□□□□ -0.52
CUX1-205ENST00000425244 STAT2P52630 851 aa11.78□□□□□ -0.52
CUX1-205ENST00000425244 CASP8Q14790 479 aa11.78□□□□□ -0.52
CUX1-205ENST00000425244 COBLL1Q53SF7 1204 aa11.78□□□□□ -0.52
CUX1-205ENST00000425244 FIGNQ5HY92 759 aa11.78□□□□□ -0.52
CUX1-205ENST00000425244 FAM26FQ5R3K3 315 aa11.78□□□□□ -0.52
CUX1-205ENST00000425244 PAPD7Q5XG87 772 aaKnown RBP11.78□□□□□ -0.52
CUX1-205ENST00000425244 POTEBQ6S5H4 581 aa11.78□□□□□ -0.52
CUX1-205ENST00000425244 MOB2Q70IA6 237 aa11.78□□□□□ -0.52
CUX1-205ENST00000425244 CCDC102AQ96A19 550 aa11.78□□□□□ -0.52
CUX1-205ENST00000425244 GDAP1L1Q96MZ0 367 aa11.78□□□□□ -0.52
CUX1-205ENST00000425244 FGFBP2Q9BYJ0 223 aa11.78□□□□□ -0.52
CUX1-205ENST00000425244 VCPKMTQ9H867 229 aa11.78□□□□□ -0.52
CUX1-205ENST00000425244 ZNF408Q9H9D4 720 aa11.78□□□□□ -0.52
CUX1-205ENST00000425244 NLRC4Q9NPP4 1024 aa11.78□□□□□ -0.52
CUX1-205ENST00000425244 KCNG1Q9UIX4 513 aa11.78□□□□□ -0.52
CUX1-205ENST00000425244 PCDHA13Q9Y5I0 950 aa11.78□□□□□ -0.52
CUX1-205ENST00000425244 CCDC66A2RUB6 948 aa11.78□□□□□ -0.52
CUX1-205ENST00000425244 USO1O60763 962 aaKnown RBP11.78□□□□□ -0.52
CUX1-205ENST00000425244 PHACTR2O75167 634 aa11.78□□□□□ -0.52
CUX1-205ENST00000425244 EIF3JO75822 258 aaKnown RBP11.78□□□□□ -0.52
CUX1-205ENST00000425244 MOCS3O95396 460 aa11.78□□□□□ -0.52
CUX1-205ENST00000425244 MAP3K10Q02779 954 aa11.78□□□□□ -0.52
CUX1-205ENST00000425244 CRACR2AQ9BSW2 395 aa11.78□□□□□ -0.52
CUX1-205ENST00000425244 PLAGL2Q9UPG8 496 aa11.78□□□□□ -0.52
CUX1-205ENST00000425244 CLK2P49760 499 aaKnown RBP11.77□□□□□ -0.53
CUX1-205ENST00000425244 CKAP4Q07065 602 aaKnown RBP11.77□□□□□ -0.53
CUX1-205ENST00000425244 ENOX2Q16206 610 aaKnown RBP11.77□□□□□ -0.53
CUX1-205ENST00000425244 SUPT20HL1Q3ZLR7 823 aa11.77□□□□□ -0.53
CUX1-205ENST00000425244 TDRD12Q587J7 1177 aaKnown RBP11.77□□□□□ -0.53
CUX1-205ENST00000425244 HERC4Q5GLZ8 1057 aaPredicted RBP11.77□□□□□ -0.53
CUX1-205ENST00000425244 SYDE2Q5VT97 1194 aa11.77□□□□□ -0.53
CUX1-205ENST00000425244 GPBP1Q86WP2 473 aa11.77□□□□□ -0.53
CUX1-205ENST00000425244 DNAJC19Q96DA6 116 aa11.77□□□□□ -0.53
CUX1-205ENST00000425244 GMCL1Q96IK5 515 aa11.77□□□□□ -0.53
CUX1-205ENST00000425244 PRR12Q9ULL5 1215 aa11.77□□□□□ -0.53
CUX1-205ENST00000425244 CAPN6Q9Y6Q1 641 aa11.77□□□□□ -0.53
CUX1-205ENST00000425244 PDE2AO00408 941 aaPredicted RBP11.77□□□□□ -0.53
CUX1-205ENST00000425244 PLA2G4BP0C869 781 aa11.77□□□□□ -0.53
CUX1-205ENST00000425244 LMAN1P49257 510 aa11.77□□□□□ -0.53
CUX1-205ENST00000425244 USP14P54578 494 aa11.77□□□□□ -0.53
CUX1-205ENST00000425244 NAP1L1P55209 391 aaKnown RBP11.77□□□□□ -0.53
CUX1-205ENST00000425244 C2orf54Q08AI8 447 aa11.77□□□□□ -0.53
CUX1-205ENST00000425244 GSPT2Q8IYD1 628 aaKnown RBP11.77□□□□□ -0.53
CUX1-205ENST00000425244 TSGA10Q9BZW7 698 aa11.77□□□□□ -0.53
CUX1-205ENST00000425244 SH2D4AQ9H788 454 aa11.77□□□□□ -0.53
CUX1-205ENST00000425244 ATAD5Q96QE3 1844 aa11.76□□□□□ -0.53
CUX1-205ENST00000425244 TACC1O75410 805 aa11.76□□□□□ -0.53
CUX1-205ENST00000425244 GCFC2P16383 781 aaKnown RBP11.76□□□□□ -0.53
CUX1-205ENST00000425244 MATR3P43243 847 aaKnown RBP eCLIP11.76□□□□□ -0.535e-7■■■■□ 22.9
CUX1-205ENST00000425244 CDK17Q00537 523 aa11.76□□□□□ -0.53
CUX1-205ENST00000425244 GFPT1Q06210 699 aaPredicted RBP11.76□□□□□ -0.53
CUX1-205ENST00000425244 PSMD2Q13200 908 aa11.76□□□□□ -0.53
CUX1-205ENST00000425244 KLRG1Q96E93 195 aa11.76□□□□□ -0.53
CUX1-205ENST00000425244 ANO3Q9BYT9 981 aa11.76□□□□□ -0.53
CUX1-205ENST00000425244 COL4A3BPQ9Y5P4 624 aa11.76□□□□□ -0.53
CUX1-205ENST00000425244 SMCHD1A6NHR9 2005 aa11.76□□□□□ -0.53
CUX1-205ENST00000425244 POTEFA5A3E0 1075 aa11.76□□□□□ -0.53
CUX1-205ENST00000425244 FAM193AP78312 1265 aa11.76□□□□□ -0.53
CUX1-205ENST00000425244 MRPS25P82663 173 aaKnown RBP11.76□□□□□ -0.53
CUX1-205ENST00000425244 FKBP3Q00688 224 aaKnown RBP11.76□□□□□ -0.53
CUX1-205ENST00000425244 APBA1Q02410 837 aa11.76□□□□□ -0.53
CUX1-205ENST00000425244 ARID5AQ03989 594 aa11.76□□□□□ -0.53
CUX1-205ENST00000425244 PRR16Q569H4 304 aa11.76□□□□□ -0.53
CUX1-205ENST00000425244 HSP90B2PQ58FF3 399 aa11.76□□□□□ -0.53
CUX1-205ENST00000425244 POTEGQ6S5H5 508 aa11.76□□□□□ -0.53
CUX1-205ENST00000425244 POTEEQ6S8J3 1075 aa11.76□□□□□ -0.53
CUX1-205ENST00000425244 ZNF662Q6ZS27 426 aa11.76□□□□□ -0.53
CUX1-205ENST00000425244 CCDC65Q8IXS2 484 aa11.76□□□□□ -0.53
CUX1-205ENST00000425244 SCYL3Q8IZE3 742 aa11.76□□□□□ -0.53
CUX1-205ENST00000425244 ADAM21Q9UKJ8 722 aa11.76□□□□□ -0.53
CUX1-205ENST00000425244 LRRIQ3A6PVS8 624 aaPredicted RBP11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms