RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 USH1CQ9Y6N9 552 aa10.69□□□□□ -0.7
USP54-205ENST00000424265 hCG_2014768A0A024R1R8 64 aa10.69□□□□□ -0.7
USP54-205ENST00000424265 SYKP43405 635 aa10.69□□□□□ -0.7
USP54-205ENST00000424265 TOB2Q14106 344 aaPredicted RBP10.69□□□□□ -0.7
USP54-205ENST00000424265 SEPT2Q15019 361 aa10.69□□□□□ -0.7
USP54-205ENST00000424265 CYB5R4Q7L1T6 521 aa10.69□□□□□ -0.7
USP54-205ENST00000424265 TBC1D5Q92609 795 aa10.69□□□□□ -0.7
USP54-205ENST00000424265 IL17RAQ96F46 866 aa10.69□□□□□ -0.7
USP54-205ENST00000424265 FUCA2Q9BTY2 467 aa10.69□□□□□ -0.7
USP54-205ENST00000424265 GPRC5DQ9NZD1 345 aa10.69□□□□□ -0.7
USP54-205ENST00000424265 ZBTB21Q9ULJ3 1066 aa10.69□□□□□ -0.7
USP54-205ENST00000424265 EIF4E1BA6NMX2 242 aaKnown RBP10.69□□□□□ -0.7
USP54-205ENST00000424265 EEF2P13639 858 aaKnown RBP10.69□□□□□ -0.7
USP54-205ENST00000424265 MAP7Q14244 749 aa10.69□□□□□ -0.7
USP54-205ENST00000424265 ZNF653Q96CK0 615 aa10.69□□□□□ -0.7
USP54-205ENST00000424265 TFIP11Q9UBB9 837 aaKnown RBP10.69□□□□□ -0.7
USP54-205ENST00000424265 ATP8A1Q9Y2Q0 1164 aa10.69□□□□□ -0.7
USP54-205ENST00000424265 FRMPD2Q68DX3 1309 aaPredicted RBP10.68□□□□□ -0.7
USP54-205ENST00000424265 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10.68□□□□□ -0.7
USP54-205ENST00000424265 LIN7AO14910 233 aaPredicted RBP10.68□□□□□ -0.7
USP54-205ENST00000424265 FAM200BP0CF97 657 aa10.68□□□□□ -0.7
USP54-205ENST00000424265 CNGA1P29973 690 aa10.68□□□□□ -0.7
USP54-205ENST00000424265 GBP1P32455 592 aa10.68□□□□□ -0.7
USP54-205ENST00000424265 SLFN12Q8IYM2 578 aa10.68□□□□□ -0.7
USP54-205ENST00000424265 CCDC63Q8NA47 563 aa10.68□□□□□ -0.7
USP54-205ENST00000424265 SREK1Q8WXA9 508 aaKnown RBP10.68□□□□□ -0.7
USP54-205ENST00000424265 VIPAS39Q9H9C1 493 aa10.68□□□□□ -0.7
USP54-205ENST00000424265 NOD2Q9HC29 1040 aa10.68□□□□□ -0.7
USP54-205ENST00000424265 ITGB1BP2Q9UKP3 347 aa10.68□□□□□ -0.7
USP54-205ENST00000424265 PPP2R2CQ9Y2T4 447 aa10.68□□□□□ -0.7
USP54-205ENST00000424265 DAAM1Q9Y4D1 1078 aa10.68□□□□□ -0.7
USP54-205ENST00000424265 C4AP0C0L4 1744 aa10.68□□□□□ -0.7
USP54-205ENST00000424265 GKAP1Q5VSY0 366 aaPredicted RBP10.68□□□□□ -0.7
USP54-205ENST00000424265 CDHR1Q96JP9 859 aa10.68□□□□□ -0.7
USP54-205ENST00000424265 TSG101Q99816 390 aa10.68□□□□□ -0.7
USP54-205ENST00000424265 USP17L15C9J2P7 530 aa10.68□□□□□ -0.7
USP54-205ENST00000424265 IQCJ-SCHIP1C9J366 451 aaPredicted RBP10.68□□□□□ -0.7
USP54-205ENST00000424265 USP17L13C9JLJ4 530 aa10.68□□□□□ -0.7
USP54-205ENST00000424265 USP17L11C9JVI0 530 aa10.68□□□□□ -0.7
USP54-205ENST00000424265 USP17L18D6R9N7 530 aa10.68□□□□□ -0.7
USP54-205ENST00000424265 USP17L22D6RA61 530 aa10.68□□□□□ -0.7
USP54-205ENST00000424265 USP17L17D6RBQ6 530 aa10.68□□□□□ -0.7
USP54-205ENST00000424265 USP17L19D6RCP7 530 aa10.68□□□□□ -0.7
USP54-205ENST00000424265 USP17L20D6RJB6 530 aa10.68□□□□□ -0.7
USP54-205ENST00000424265 JAK2O60674 1132 aa10.68□□□□□ -0.7
USP54-205ENST00000424265 AKR1B1P15121 316 aa10.68□□□□□ -0.7
USP54-205ENST00000424265 USP17L24Q0WX57 530 aa10.68□□□□□ -0.7
USP54-205ENST00000424265 APOBEC3HQ6NTF7 200 aaKnown RBP10.68□□□□□ -0.7
USP54-205ENST00000424265 PIK3AP1Q6ZUJ8 805 aa10.68□□□□□ -0.7
USP54-205ENST00000424265 SCYL3Q8IZE3 742 aa10.68□□□□□ -0.7
USP54-205ENST00000424265 MXD3Q9BW11 206 aa10.68□□□□□ -0.7
USP54-205ENST00000424265 PITPNM2Q9BZ72 1349 aa10.68□□□□□ -0.7
USP54-205ENST00000424265 ZBTB5O15062 677 aa10.68□□□□□ -0.7
USP54-205ENST00000424265 ATP1A2P50993 1020 aa10.68□□□□□ -0.7
USP54-205ENST00000424265 FAM160A1Q05DH4 1040 aa10.68□□□□□ -0.7
USP54-205ENST00000424265 GRAMD4Q6IC98 578 aa10.68□□□□□ -0.7
USP54-205ENST00000424265 CCDC174Q6PII3 467 aa10.68□□□□□ -0.7
USP54-205ENST00000424265 FCHSD1Q86WN1 690 aa10.68□□□□□ -0.7
USP54-205ENST00000424265 SAMD3Q8N6K7 520 aa10.68□□□□□ -0.7
USP54-205ENST00000424265 TMCO5AQ8N6Q1 288 aa10.68□□□□□ -0.7
USP54-205ENST00000424265 MB21D1Q8N884 522 aa10.68□□□□□ -0.7
USP54-205ENST00000424265 BHMTQ93088 406 aa10.68□□□□□ -0.7
USP54-205ENST00000424265 TUBA8Q9NY65 449 aaPredicted RBP10.68□□□□□ -0.7
USP54-205ENST00000424265 FBXO9Q9UK97 447 aaPredicted RBP10.68□□□□□ -0.7
USP54-205ENST00000424265 C15orf41Q9Y2V0 281 aa10.68□□□□□ -0.7
USP54-205ENST00000424265 LUC7L2Q9Y383 392 aaKnown RBP10.68□□□□□ -0.7
USP54-205ENST00000424265 LRRIQ3A6PVS8 624 aaPredicted RBP10.67□□□□□ -0.7
USP54-205ENST00000424265 ARHGAP6O43182 974 aa10.67□□□□□ -0.7
USP54-205ENST00000424265 TBC1D12O60347 775 aa10.67□□□□□ -0.7
USP54-205ENST00000424265 DIAPH2O60879 1101 aa10.67□□□□□ -0.7
USP54-205ENST00000424265 MYBL1P10243 752 aa10.67□□□□□ -0.7
USP54-205ENST00000424265 NEK8Q86SG6 692 aa10.67□□□□□ -0.7
USP54-205ENST00000424265 VPS54Q9P1Q0 977 aa10.67□□□□□ -0.7
USP54-205ENST00000424265 ZHX2Q9Y6X8 837 aa10.67□□□□□ -0.7
USP54-205ENST00000424265 GGCXP38435 758 aa10.67□□□□□ -0.7
USP54-205ENST00000424265 EPS15P42566 896 aa10.67□□□□□ -0.7
USP54-205ENST00000424265 LETM2Q2VYF4 491 aa10.67□□□□□ -0.7
USP54-205ENST00000424265 RASIP1Q5U651 963 aa10.67□□□□□ -0.7
USP54-205ENST00000424265 CPXCR1Q8N123 301 aa10.67□□□□□ -0.7
USP54-205ENST00000424265 ARHGAP18Q8N392 663 aa10.67□□□□□ -0.7
USP54-205ENST00000424265 KCTD17Q8N5Z5 321 aa10.67□□□□□ -0.7
USP54-205ENST00000424265 ZNF280CQ8ND82 737 aa10.67□□□□□ -0.7
USP54-205ENST00000424265 N4BP2Q86UW6 1770 aaPredicted RBP10.67□□□□□ -0.7
USP54-205ENST00000424265 SUPT3HO75486 399 aa10.67□□□□□ -0.7
USP54-205ENST00000424265 ANP32DO95626 131 aa10.67□□□□□ -0.7
USP54-205ENST00000424265 MLH1P40692 756 aa10.67□□□□□ -0.7
USP54-205ENST00000424265 STAT6P42226 847 aa10.67□□□□□ -0.7
USP54-205ENST00000424265 KCTD2Q14681 263 aa10.67□□□□□ -0.7
USP54-205ENST00000424265 SLC44A4Q53GD3 710 aa10.67□□□□□ -0.7
USP54-205ENST00000424265 NSMFQ6X4W1 530 aa10.67□□□□□ -0.7
USP54-205ENST00000424265 GDAP1L1Q96MZ0 367 aa10.67□□□□□ -0.7
USP54-205ENST00000424265 IWS1Q96ST2 819 aa10.67□□□□□ -0.7
USP54-205ENST00000424265 GPBP1L1Q9HC44 474 aaPredicted RBP10.67□□□□□ -0.7
USP54-205ENST00000424265 F5H6K3 240 aa10.67□□□□□ -0.7
USP54-205ENST00000424265 SMNDC1O75940 238 aaKnown RBP eCLIP10.67□□□□□ -0.7
USP54-205ENST00000424265 CFBP00751 764 aa10.67□□□□□ -0.7
USP54-205ENST00000424265 ALAS1P13196 640 aa10.67□□□□□ -0.7
USP54-205ENST00000424265 ALOX15P16050 662 aaPredicted RBP10.67□□□□□ -0.7
USP54-205ENST00000424265 NEK2P51955 445 aa10.67□□□□□ -0.7
USP54-205ENST00000424265 KLRC3Q07444 240 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms