RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 HLA-CQ95604 372 aa13.19□□□□□ -0.3
SQSTM1-203ENST00000422245 TOP1MTQ969P6 601 aa13.19□□□□□ -0.3
SQSTM1-203ENST00000422245 PGBD1Q96JS3 809 aa13.19□□□□□ -0.3
SQSTM1-203ENST00000422245 SAMD11Q96NU1 681 aa13.19□□□□□ -0.3
SQSTM1-203ENST00000422245 SUGCTQ9HAC7 445 aa13.19□□□□□ -0.3
SQSTM1-203ENST00000422245 FAM217BQ9NTX9 383 aaPredicted RBP13.19□□□□□ -0.3
SQSTM1-203ENST00000422245 NAP1L2Q9ULW6 460 aaPredicted RBP13.19□□□□□ -0.3
SQSTM1-203ENST00000422245 NID2Q14112 1375 aa13.19□□□□□ -0.3
SQSTM1-203ENST00000422245 BRWD1Q9NSI6 2320 aa13.18□□□□□ -0.3
SQSTM1-203ENST00000422245 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.18□□□□□ -0.3
SQSTM1-203ENST00000422245 ESYT2A0FGR8 921 aa13.18□□□□□ -0.3
SQSTM1-203ENST00000422245 CHRNA1P02708 482 aa13.18□□□□□ -0.3
SQSTM1-203ENST00000422245 GHRP10912 638 aa13.18□□□□□ -0.3
SQSTM1-203ENST00000422245 BMP1P13497 986 aa13.18□□□□□ -0.3
SQSTM1-203ENST00000422245 CDC27P30260 824 aa13.18□□□□□ -0.3
SQSTM1-203ENST00000422245 CLK2P49760 499 aaKnown RBP13.18□□□□□ -0.3
SQSTM1-203ENST00000422245 SLC26A2P50443 739 aa13.18□□□□□ -0.3
SQSTM1-203ENST00000422245 ACTR2P61160 394 aa13.18□□□□□ -0.3
SQSTM1-203ENST00000422245 MGAT3Q09327 533 aa13.18□□□□□ -0.3
SQSTM1-203ENST00000422245 PFKFB3Q16875 520 aaPredicted RBP13.18□□□□□ -0.3
SQSTM1-203ENST00000422245 MARCH8Q5T0T0 291 aa13.18□□□□□ -0.3
SQSTM1-203ENST00000422245 NIPA1Q7RTP0 329 aa13.18□□□□□ -0.3
SQSTM1-203ENST00000422245 CYP2W1Q8TAV3 490 aa13.18□□□□□ -0.3
SQSTM1-203ENST00000422245 CCDC12Q8WUD4 166 aaPredicted RBP13.18□□□□□ -0.3
SQSTM1-203ENST00000422245 JAKMIP1Q96N16 626 aaKnown RBP13.18□□□□□ -0.3
SQSTM1-203ENST00000422245 C17orf80Q9BSJ5 609 aa13.18□□□□□ -0.3
SQSTM1-203ENST00000422245 OSBPL7Q9BZF2 842 aa13.18□□□□□ -0.3
SQSTM1-203ENST00000422245 AGO4Q9HCK5 861 aaKnown RBP13.18□□□□□ -0.3
SQSTM1-203ENST00000422245 TRPC6Q9Y210 931 aa13.18□□□□□ -0.3
SQSTM1-203ENST00000422245 RALGAPA2Q2PPJ7 1873 aa13.18□□□□□ -0.3
SQSTM1-203ENST00000422245 NLRC5Q86WI3 1866 aa13.17□□□□□ -0.3
SQSTM1-203ENST00000422245 MEIS1O00470 390 aa13.17□□□□□ -0.3
SQSTM1-203ENST00000422245 SCG2P13521 617 aa13.17□□□□□ -0.3
SQSTM1-203ENST00000422245 INSRRP14616 1297 aa13.17□□□□□ -0.3
SQSTM1-203ENST00000422245 HSPA4P34932 840 aa13.17□□□□□ -0.3
SQSTM1-203ENST00000422245 KCNQ1P51787 676 aa13.17□□□□□ -0.3
SQSTM1-203ENST00000422245 IGBP1P78318 339 aa13.17□□□□□ -0.3
SQSTM1-203ENST00000422245 MRPS6P82932 125 aaKnown RBP13.17□□□□□ -0.3
SQSTM1-203ENST00000422245 ITGB3BPQ13352 177 aaPredicted RBP13.17□□□□□ -0.3
SQSTM1-203ENST00000422245 LPIN1Q14693 890 aa13.17□□□□□ -0.3
SQSTM1-203ENST00000422245 PTPROQ16827 1216 aa13.17□□□□□ -0.3
SQSTM1-203ENST00000422245 MCTP2Q6DN12 878 aa13.17□□□□□ -0.3
SQSTM1-203ENST00000422245 BLOC1S2Q6QNY1 142 aa13.17□□□□□ -0.3
SQSTM1-203ENST00000422245 TSHZ1Q6ZSZ6 1077 aa13.17□□□□□ -0.3
SQSTM1-203ENST00000422245 PLPPR4Q7Z2D5 763 aa13.17□□□□□ -0.3
SQSTM1-203ENST00000422245 FBXL16Q8N461 479 aa13.17□□□□□ -0.3
SQSTM1-203ENST00000422245 DNAJB3Q8WWF6 145 aa13.17□□□□□ -0.3
SQSTM1-203ENST00000422245 BRF1Q92994 677 aa13.17□□□□□ -0.3
SQSTM1-203ENST00000422245 PCYT2Q99447 389 aa13.17□□□□□ -0.3
SQSTM1-203ENST00000422245 MUC3AQ02505 3323 aa13.16□□□□□ -0.3
SQSTM1-203ENST00000422245 TCF20Q9UGU0 1960 aaKnown RBP13.16□□□□□ -0.3
SQSTM1-203ENST00000422245 REV3LO60673 3130 aa13.16□□□□□ -0.3
SQSTM1-203ENST00000422245 RBAK-RBAKDNI3L0D1 243 aa13.16□□□□□ -0.3
SQSTM1-203ENST00000422245 M0QZ92 97 aa13.16□□□□□ -0.3
SQSTM1-203ENST00000422245 UPP2O95045 317 aa13.16□□□□□ -0.3
SQSTM1-203ENST00000422245 REC8O95072 547 aa13.16□□□□□ -0.3
SQSTM1-203ENST00000422245 ARP10275 920 aa13.16□□□□□ -0.3
SQSTM1-203ENST00000422245 ZNF76P36508 570 aa13.16□□□□□ -0.3
SQSTM1-203ENST00000422245 STAT5BP51692 787 aa13.16□□□□□ -0.3
SQSTM1-203ENST00000422245 SETQ01105 290 aaPredicted RBP13.16□□□□□ -0.3
SQSTM1-203ENST00000422245 APOBRQ0VD83 1088 aa13.16□□□□□ -0.3
SQSTM1-203ENST00000422245 PLCB4Q15147 1175 aa13.16□□□□□ -0.3
SQSTM1-203ENST00000422245 EPC2Q52LR7 807 aa13.16□□□□□ -0.3
SQSTM1-203ENST00000422245 TIGD5Q53EQ6 642 aa13.16□□□□□ -0.3
SQSTM1-203ENST00000422245 FBXO47Q5MNV8 452 aa13.16□□□□□ -0.3
SQSTM1-203ENST00000422245 IER5Q5VY09 327 aa13.16□□□□□ -0.3
SQSTM1-203ENST00000422245 Q6ZUG5 572 aa13.16□□□□□ -0.3
SQSTM1-203ENST00000422245 MRPL38Q96DV4 380 aaKnown RBP13.16□□□□□ -0.3
SQSTM1-203ENST00000422245 CCDC136Q96JN2 1154 aa13.16□□□□□ -0.3
SQSTM1-203ENST00000422245 FAM49AQ9H0Q0 323 aaPredicted RBP13.16□□□□□ -0.3
SQSTM1-203ENST00000422245 TMEM260Q9NX78 707 aa13.16□□□□□ -0.3
SQSTM1-203ENST00000422245 SNX14Q9Y5W7 946 aa13.16□□□□□ -0.3
SQSTM1-203ENST00000422245 CDY2AQ9Y6F7 541 aa13.16□□□□□ -0.3
SQSTM1-203ENST00000422245 POTEB3A0JP26 581 aa13.15□□□□□ -0.3
SQSTM1-203ENST00000422245 CYP3A4P08684 503 aa13.15□□□□□ -0.3
SQSTM1-203ENST00000422245 CPA1P15085 419 aa13.15□□□□□ -0.3
SQSTM1-203ENST00000422245 PSMA5P28066 241 aa13.15□□□□□ -0.3
SQSTM1-203ENST00000422245 ADD1P35611 737 aaKnown RBP13.15□□□□□ -0.3
SQSTM1-203ENST00000422245 JAKMIP3Q5VZ66 844 aa13.15□□□□□ -0.3
SQSTM1-203ENST00000422245 FAM160B1Q5W0V3 765 aa13.15□□□□□ -0.3
SQSTM1-203ENST00000422245 POTEBQ6S5H4 581 aa13.15□□□□□ -0.3
SQSTM1-203ENST00000422245 PLA2G4DQ86XP0 818 aa13.15□□□□□ -0.3
SQSTM1-203ENST00000422245 TMEM192Q8IY95 271 aa13.15□□□□□ -0.3
SQSTM1-203ENST00000422245 REXO1Q8N1G1 1221 aaKnown RBP13.15□□□□□ -0.3
SQSTM1-203ENST00000422245 CCDC148Q8NFR7 591 aa13.15□□□□□ -0.3
SQSTM1-203ENST00000422245 IL17RAQ96F46 866 aa13.15□□□□□ -0.3
SQSTM1-203ENST00000422245 ZMYND12Q9H0C1 365 aa13.15□□□□□ -0.3
SQSTM1-203ENST00000422245 C6orf50Q9HD87 102 aa13.15□□□□□ -0.3
SQSTM1-203ENST00000422245 RWDD3Q9Y3V2 267 aa13.15□□□□□ -0.3
SQSTM1-203ENST00000422245 PCDHA2Q9Y5H9 948 aa13.15□□□□□ -0.3
SQSTM1-203ENST00000422245 TRPV2Q9Y5S1 764 aa13.15□□□□□ -0.3
SQSTM1-203ENST00000422245 SQORQ9Y6N5 450 aa13.15□□□□□ -0.3
SQSTM1-203ENST00000422245 ADGRA3Q8IWK6 1321 aa13.14□□□□□ -0.31
SQSTM1-203ENST00000422245 IGLV3-22A0A075B6J6 115 aa13.14□□□□□ -0.31
SQSTM1-203ENST00000422245 IGKV6D-21A0A0A0MT36 114 aa13.14□□□□□ -0.31
SQSTM1-203ENST00000422245 FAM86B1E9PN63 330 aa13.14□□□□□ -0.31
SQSTM1-203ENST00000422245 H3BNC9 293 aa13.14□□□□□ -0.31
SQSTM1-203ENST00000422245 BACH1O14867 736 aa13.14□□□□□ -0.31
SQSTM1-203ENST00000422245 PRPF3O43395 683 aaKnown RBP13.14□□□□□ -0.31
SQSTM1-203ENST00000422245 ATG7O95352 703 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms