RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 KCNA5P22460 613 aa13.23□□□□□ -0.29
USP4-204ENST00000416417 ADCY7P51828 1080 aa13.23□□□□□ -0.29
USP4-204ENST00000416417 ITGB3BPQ13352 177 aaPredicted RBP13.23□□□□□ -0.29
USP4-204ENST00000416417 GPM6BQ13491 265 aa13.23□□□□□ -0.29
USP4-204ENST00000416417 RNF20Q5VTR2 975 aa13.23□□□□□ -0.29
USP4-204ENST00000416417 DHX32Q7L7V1 743 aaKnown RBP13.23□□□□□ -0.29
USP4-204ENST00000416417 TMEM192Q8IY95 271 aa13.23□□□□□ -0.29
USP4-204ENST00000416417 ANO3Q9BYT9 981 aa13.23□□□□□ -0.29
USP4-204ENST00000416417 SMARCAD1Q9H4L7 1026 aa13.23□□□□□ -0.29
USP4-204ENST00000416417 EPHX3Q9H6B9 360 aa13.23□□□□□ -0.29
USP4-204ENST00000416417 UBE2ZQ9H832 354 aaPredicted RBP13.23□□□□□ -0.29
USP4-204ENST00000416417 EHMT1Q9H9B1 1298 aa13.23□□□□□ -0.29
USP4-204ENST00000416417 AGO3Q9H9G7 860 aaKnown RBP13.23□□□□□ -0.29
USP4-204ENST00000416417 JPH1Q9HDC5 661 aaPredicted RBP13.23□□□□□ -0.29
USP4-204ENST00000416417 CD320Q9NPF0 282 aa13.23□□□□□ -0.29
USP4-204ENST00000416417 RIC8AQ9NPQ8 531 aa13.23□□□□□ -0.29
USP4-204ENST00000416417 SLC9A2Q9UBY0 812 aa13.23□□□□□ -0.29
USP4-204ENST00000416417 SMCO2A6NFE2 343 aa13.23□□□□□ -0.29
USP4-204ENST00000416417 CD52P31358 61 aa13.23□□□□□ -0.29
USP4-204ENST00000416417 ADD1P35611 737 aaKnown RBP13.23□□□□□ -0.29
USP4-204ENST00000416417 ACTR2P61160 394 aa13.23□□□□□ -0.29
USP4-204ENST00000416417 APOBRQ0VD83 1088 aa13.23□□□□□ -0.29
USP4-204ENST00000416417 FBXO47Q5MNV8 452 aa13.23□□□□□ -0.29
USP4-204ENST00000416417 JAKMIP3Q5VZ66 844 aa13.23□□□□□ -0.29
USP4-204ENST00000416417 EP400NLQ6ZTU2 488 aa13.23□□□□□ -0.29
USP4-204ENST00000416417 LINC01599Q8WXQ3 324 aa13.23□□□□□ -0.29
USP4-204ENST00000416417 APBB2Q92870 758 aa13.23□□□□□ -0.29
USP4-204ENST00000416417 RBM28Q9NW13 759 aaKnown RBP13.23□□□□□ -0.29
USP4-204ENST00000416417 TRPC6Q9Y210 931 aa13.23□□□□□ -0.29
USP4-204ENST00000416417 MBLAC1A4D2B0 266 aaPredicted RBP13.22□□□□□ -0.29
USP4-204ENST00000416417 BDP1A6H8Y1 2624 aa13.22□□□□□ -0.29
USP4-204ENST00000416417 H3BQ06 376 aaPredicted RBP13.22□□□□□ -0.29
USP4-204ENST00000416417 ENPP3O14638 875 aa13.22□□□□□ -0.29
USP4-204ENST00000416417 CTNNB1P35222 781 aa13.22□□□□□ -0.29
USP4-204ENST00000416417 MRPS6P82932 125 aaKnown RBP13.22□□□□□ -0.29
USP4-204ENST00000416417 PLCB4Q15147 1175 aa13.22□□□□□ -0.29
USP4-204ENST00000416417 TCEAL5Q5H9L2 206 aa13.22□□□□□ -0.29
USP4-204ENST00000416417 TAF2Q6P1X5 1199 aa13.22□□□□□ -0.29
USP4-204ENST00000416417 CENPQQ7L2Z9 268 aaPredicted RBP13.22□□□□□ -0.29
USP4-204ENST00000416417 MRPL38Q96DV4 380 aaKnown RBP13.22□□□□□ -0.29
USP4-204ENST00000416417 IL17RAQ96F46 866 aa13.22□□□□□ -0.29
USP4-204ENST00000416417 AZI2Q9H6S1 392 aa13.22□□□□□ -0.29
USP4-204ENST00000416417 AGO4Q9HCK5 861 aaKnown RBP13.22□□□□□ -0.29
USP4-204ENST00000416417 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.21□□□□□ -0.29
USP4-204ENST00000416417 H3BNC9 293 aa13.21□□□□□ -0.29
USP4-204ENST00000416417 CDC45O75419 566 aa13.21□□□□□ -0.29
USP4-204ENST00000416417 CCNE2O96020 404 aa13.21□□□□□ -0.29
USP4-204ENST00000416417 TRMT1LQ7Z2T5 733 aaKnown RBP13.21□□□□□ -0.29
USP4-204ENST00000416417 RSPH3Q86UC2 560 aa13.21□□□□□ -0.29
USP4-204ENST00000416417 RTN4RL1Q86UN2 441 aaPredicted RBP13.21□□□□□ -0.29
USP4-204ENST00000416417 FIBCD1Q8N539 461 aa13.21□□□□□ -0.29
USP4-204ENST00000416417 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.21□□□□□ -0.29
USP4-204ENST00000416417 SDF4Q9BRK5 362 aa13.21□□□□□ -0.29
USP4-204ENST00000416417 BARHL2Q9NY43 387 aa13.21□□□□□ -0.29
USP4-204ENST00000416417 FAM86C2PA6NEL3 165 aa13.2□□□□□ -0.3
USP4-204ENST00000416417 LINC00271P0C7V0 271 aa13.2□□□□□ -0.3
USP4-204ENST00000416417 IL9P15248 144 aa13.2□□□□□ -0.3
USP4-204ENST00000416417 ZNF76P36508 570 aa13.2□□□□□ -0.3
USP4-204ENST00000416417 CLK2P49760 499 aaKnown RBP13.2□□□□□ -0.3
USP4-204ENST00000416417 STAT5BP51692 787 aa13.2□□□□□ -0.3
USP4-204ENST00000416417 FGD1P98174 961 aa13.2□□□□□ -0.3
USP4-204ENST00000416417 TMEM266Q2M3C6 531 aa13.2□□□□□ -0.3
USP4-204ENST00000416417 CEP55Q53EZ4 464 aa13.2□□□□□ -0.3
USP4-204ENST00000416417 Q6ZUG5 572 aa13.2□□□□□ -0.3
USP4-204ENST00000416417 RPAINQ86UA6 219 aa13.2□□□□□ -0.3
USP4-204ENST00000416417 BANK1Q8NDB2 785 aa13.2□□□□□ -0.3
USP4-204ENST00000416417 JAKMIP1Q96N16 626 aaKnown RBP13.2□□□□□ -0.3
USP4-204ENST00000416417 PPP1R16BQ96T49 567 aa13.2□□□□□ -0.3
USP4-204ENST00000416417 NFASCO94856 1347 aa13.19□□□□□ -0.3
USP4-204ENST00000416417 POTEB3A0JP26 581 aa13.19□□□□□ -0.3
USP4-204ENST00000416417 RRN3P2A6NIE6 340 aa13.19□□□□□ -0.3
USP4-204ENST00000416417 FAM86B1E9PN63 330 aa13.19□□□□□ -0.3
USP4-204ENST00000416417 MEIS1O00470 390 aa13.19□□□□□ -0.3
USP4-204ENST00000416417 GRM6O15303 877 aa13.19□□□□□ -0.3
USP4-204ENST00000416417 MAFGO15525 162 aa13.19□□□□□ -0.3
USP4-204ENST00000416417 FAM86B2P0C5J1 330 aa13.19□□□□□ -0.3
USP4-204ENST00000416417 SREBF1P36956 1147 aa13.19□□□□□ -0.3
USP4-204ENST00000416417 GATMP50440 423 aa13.19□□□□□ -0.3
USP4-204ENST00000416417 METAP2P50579 478 aaKnown RBP eCLIP13.19□□□□□ -0.3
USP4-204ENST00000416417 PTPROQ16827 1216 aa13.19□□□□□ -0.3
USP4-204ENST00000416417 TSGA10IPQ3SY00 556 aa13.19□□□□□ -0.3
USP4-204ENST00000416417 PAN2Q504Q3 1202 aaKnown RBP13.19□□□□□ -0.3
USP4-204ENST00000416417 PPP1R18Q6NYC8 613 aa13.19□□□□□ -0.3
USP4-204ENST00000416417 POTEBQ6S5H4 581 aa13.19□□□□□ -0.3
USP4-204ENST00000416417 TSHZ1Q6ZSZ6 1077 aa13.19□□□□□ -0.3
USP4-204ENST00000416417 BRF1Q92994 677 aa13.19□□□□□ -0.3
USP4-204ENST00000416417 SAMD11Q96NU1 681 aa13.19□□□□□ -0.3
USP4-204ENST00000416417 CDHR5Q9HBB8 845 aa13.19□□□□□ -0.3
USP4-204ENST00000416417 GINS2Q9Y248 185 aa13.19□□□□□ -0.3
USP4-204ENST00000416417 TRPV2Q9Y5S1 764 aa13.19□□□□□ -0.3
USP4-204ENST00000416417 ADGRA3Q8IWK6 1321 aa13.19□□□□□ -0.3
USP4-204ENST00000416417 BACH1O14867 736 aa13.18□□□□□ -0.3
USP4-204ENST00000416417 FOSP01100 380 aaPredicted RBP13.18□□□□□ -0.3
USP4-204ENST00000416417 BTG3Q14201 252 aaPredicted RBP13.18□□□□□ -0.3
USP4-204ENST00000416417 LEXMQ3ZCV2 418 aa13.18□□□□□ -0.3
USP4-204ENST00000416417 PTCRAQ6ISU1 281 aaPredicted RBP13.18□□□□□ -0.3
USP4-204ENST00000416417 MTHFD1LQ6UB35 978 aa13.18□□□□□ -0.3
USP4-204ENST00000416417 PLA2G4DQ86XP0 818 aa13.18□□□□□ -0.3
USP4-204ENST00000416417 CCDC60Q8IWA6 550 aaPredicted RBP13.18□□□□□ -0.3
USP4-204ENST00000416417 RASGRP4Q8TDF6 673 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 89.2 ms