RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 SPRED3Q2MJR0 410 aa10.74□□□□□ -0.69
CD44-206ENST00000415148 CRY2Q49AN0 593 aa10.74□□□□□ -0.69
CD44-206ENST00000415148 TRAPPC3LQ5T215 181 aa10.74□□□□□ -0.69
CD44-206ENST00000415148 CHADLQ6NUI6 762 aa10.74□□□□□ -0.69
CD44-206ENST00000415148 USP38Q8NB14 1042 aa10.74□□□□□ -0.69
CD44-206ENST00000415148 OR2W6PQ8NHA6 318 aa10.74□□□□□ -0.69
CD44-206ENST00000415148 SCFD1Q8WVM8 642 aa10.74□□□□□ -0.69
CD44-206ENST00000415148 MBOAT7Q96N66 472 aa10.74□□□□□ -0.69
CD44-206ENST00000415148 KRT12Q99456 494 aa10.74□□□□□ -0.69
CD44-206ENST00000415148 PSTPIP2Q9H939 334 aa10.74□□□□□ -0.69
CD44-206ENST00000415148 GPCPD1Q9NPB8 672 aa10.74□□□□□ -0.69
CD44-206ENST00000415148 FBXL5Q9UKA1 691 aa10.74□□□□□ -0.69
CD44-206ENST00000415148 TRAF3IP3Q9Y228 551 aa10.74□□□□□ -0.69
CD44-206ENST00000415148 BACH1O14867 736 aa10.73□□□□□ -0.69
CD44-206ENST00000415148 PPP1R11O60927 126 aaPredicted RBP10.73□□□□□ -0.69
CD44-206ENST00000415148 CYP11B2P19099 503 aa10.73□□□□□ -0.69
CD44-206ENST00000415148 LSP1P33241 339 aa10.73□□□□□ -0.69
CD44-206ENST00000415148 EPS15P42566 896 aa10.73□□□□□ -0.69
CD44-206ENST00000415148 HDLBPQ00341 1268 aaKnown RBP10.73□□□□□ -0.69
CD44-206ENST00000415148 KCNH2Q12809 1159 aa10.73□□□□□ -0.69
CD44-206ENST00000415148 HERC4Q5GLZ8 1057 aaPredicted RBP10.73□□□□□ -0.69
CD44-206ENST00000415148 LRIG3Q6UXM1 1119 aa10.73□□□□□ -0.69
CD44-206ENST00000415148 ACTRT1Q8TDG2 376 aa10.73□□□□□ -0.69
CD44-206ENST00000415148 TAF4BQ92750 862 aa10.73□□□□□ -0.69
CD44-206ENST00000415148 RBM17Q96I25 401 aaKnown RBP10.73□□□□□ -0.69
CD44-206ENST00000415148 CALR3Q96L12 384 aaKnown RBP10.73□□□□□ -0.69
CD44-206ENST00000415148 MXD3Q9BW11 206 aa10.73□□□□□ -0.69
CD44-206ENST00000415148 KCNMB3Q9NPA1 279 aa10.73□□□□□ -0.69
CD44-206ENST00000415148 CCNL1Q9UK58 526 aaPredicted RBP10.73□□□□□ -0.69
CD44-206ENST00000415148 KIAA1024Q9UPX6 916 aa10.73□□□□□ -0.69
CD44-206ENST00000415148 BTAF1O14981 1849 aa10.73□□□□□ -0.69
CD44-206ENST00000415148 HMGB1P1B2RPK0 211 aaPredicted RBP10.73□□□□□ -0.69
CD44-206ENST00000415148 E9PMD0 336 aa10.73□□□□□ -0.69
CD44-206ENST00000415148 AKR1B1P15121 316 aa10.73□□□□□ -0.69
CD44-206ENST00000415148 HSPA9P38646 679 aaKnown RBP10.73□□□□□ -0.69
CD44-206ENST00000415148 PRKCIP41743 596 aa10.73□□□□□ -0.69
CD44-206ENST00000415148 ARID5AQ03989 594 aa10.73□□□□□ -0.69
CD44-206ENST00000415148 CUL1Q13616 776 aa10.73□□□□□ -0.69
CD44-206ENST00000415148 RAPGEF1Q13905 1077 aa10.73□□□□□ -0.69
CD44-206ENST00000415148 RPS6KA1Q15418 735 aa10.73□□□□□ -0.69
CD44-206ENST00000415148 UBE2SQ16763 222 aa10.73□□□□□ -0.69
CD44-206ENST00000415148 NAA35Q5VZE5 725 aa10.73□□□□□ -0.69
CD44-206ENST00000415148 IRF2BP2Q7Z5L9 587 aa10.73□□□□□ -0.69
CD44-206ENST00000415148 GPBP1Q86WP2 473 aa10.73□□□□□ -0.69
CD44-206ENST00000415148 LRRC47Q8N1G4 583 aaKnown RBP10.73□□□□□ -0.69
CD44-206ENST00000415148 KCTD17Q8N5Z5 321 aa10.73□□□□□ -0.69
CD44-206ENST00000415148 GPATCH11Q8N954 259 aa10.73□□□□□ -0.69
CD44-206ENST00000415148 LMBR1Q8WVP7 490 aa10.73□□□□□ -0.69
CD44-206ENST00000415148 PAGR1Q9BTK6 254 aa10.73□□□□□ -0.69
CD44-206ENST00000415148 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.73□□□□□ -0.69
CD44-206ENST00000415148 ISCUQ9H1K1 167 aa10.73□□□□□ -0.69
CD44-206ENST00000415148 ADAMTS1Q9UHI8 967 aa10.73□□□□□ -0.69
CD44-206ENST00000415148 DAGLAQ9Y4D2 1042 aa10.73□□□□□ -0.69
CD44-206ENST00000415148 FAM170AA1A519 330 aa10.72□□□□□ -0.69
CD44-206ENST00000415148 BHMG1C9JSJ3 638 aaPredicted RBP10.72□□□□□ -0.69
CD44-206ENST00000415148 TBX3O15119 743 aa10.72□□□□□ -0.69
CD44-206ENST00000415148 SLC12A3P55017 1021 aa10.72□□□□□ -0.69
CD44-206ENST00000415148 FAM98CQ17RN3 349 aaKnown RBP10.72□□□□□ -0.69
CD44-206ENST00000415148 DPP8Q6V1X1 898 aaPredicted RBP10.72□□□□□ -0.69
CD44-206ENST00000415148 DDX42Q86XP3 938 aaKnown RBP eCLIP10.72□□□□□ -0.69
CD44-206ENST00000415148 SCFD2Q8WU76 684 aa10.72□□□□□ -0.69
CD44-206ENST00000415148 GPR101Q96P66 508 aaPredicted RBP10.72□□□□□ -0.69
CD44-206ENST00000415148 TAF1DQ9H5J8 278 aaPredicted RBP10.72□□□□□ -0.69
CD44-206ENST00000415148 INTUQ9ULD6 942 aa10.72□□□□□ -0.69
CD44-206ENST00000415148 MYH4Q9Y623 1939 aa10.72□□□□□ -0.69
CD44-206ENST00000415148 A0A0A6YYK5 440 aaPredicted RBP10.72□□□□□ -0.69
CD44-206ENST00000415148 PDXKO00764 312 aa10.72□□□□□ -0.69
CD44-206ENST00000415148 RAD51CO43502 376 aa10.72□□□□□ -0.69
CD44-206ENST00000415148 SSBP05455 408 aaKnown RBP eCLIP10.72□□□□□ -0.69
CD44-206ENST00000415148 VPS72Q15906 364 aa10.72□□□□□ -0.69
CD44-206ENST00000415148 DPY19L2P1Q6NXN4 242 aa10.72□□□□□ -0.69
CD44-206ENST00000415148 NELFCDQ8IXH7 590 aa10.72□□□□□ -0.69
CD44-206ENST00000415148 CNPY4Q8N129 248 aa10.72□□□□□ -0.69
CD44-206ENST00000415148 FAM133AQ8N9E0 248 aa10.72□□□□□ -0.69
CD44-206ENST00000415148 YY1AP1Q9H869 796 aa10.72□□□□□ -0.69
CD44-206ENST00000415148 METTL14Q9HCE5 456 aaKnown RBP10.72□□□□□ -0.69
CD44-206ENST00000415148 TBC1D7Q9P0N9 293 aa10.72□□□□□ -0.69
CD44-206ENST00000415148 SERPINB13Q9UIV8 391 aa10.72□□□□□ -0.69
CD44-206ENST00000415148 GGA2Q9UJY4 613 aa10.72□□□□□ -0.69
CD44-206ENST00000415148 HDAC9Q9UKV0 1011 aa10.72□□□□□ -0.69
CD44-206ENST00000415148 TAF1LQ8IZX4 1826 aa10.72□□□□□ -0.69
CD44-206ENST00000415148 CCDC188H7C350 402 aa10.71□□□□□ -0.69
CD44-206ENST00000415148 CALUO43852 315 aaPredicted RBP10.71□□□□□ -0.69
CD44-206ENST00000415148 KIF4AO95239 1232 aa10.71□□□□□ -0.69
CD44-206ENST00000415148 AFPP02771 609 aaKnown RBP10.71□□□□□ -0.69
CD44-206ENST00000415148 ECHS1P30084 290 aa10.71□□□□□ -0.69
CD44-206ENST00000415148 NPEPPSP55786 919 aa10.71□□□□□ -0.69
CD44-206ENST00000415148 AP3B2Q13367 1082 aa10.71□□□□□ -0.69
CD44-206ENST00000415148 KNOP1Q1ED39 458 aaKnown RBP10.71□□□□□ -0.69
CD44-206ENST00000415148 ARSHQ5FYA8 562 aa10.71□□□□□ -0.69
CD44-206ENST00000415148 EPM2AIP1Q7L775 607 aaPredicted RBP10.71□□□□□ -0.69
CD44-206ENST00000415148 KLHL7Q8IXQ5 586 aa10.71□□□□□ -0.69
CD44-206ENST00000415148 PRPF38AQ8NAV1 312 aaKnown RBP10.71□□□□□ -0.69
CD44-206ENST00000415148 ERMNQ8TAM6 284 aa10.71□□□□□ -0.69
CD44-206ENST00000415148 TBC1D16Q8TBP0 767 aa10.71□□□□□ -0.69
CD44-206ENST00000415148 ZNF473Q8WTR7 871 aaKnown RBP10.71□□□□□ -0.69
CD44-206ENST00000415148 ATP6V1G3Q96LB4 118 aa10.71□□□□□ -0.69
CD44-206ENST00000415148 CCDC17Q96LX7 622 aa10.71□□□□□ -0.69
CD44-206ENST00000415148 EPN3Q9H201 632 aa10.71□□□□□ -0.69
CD44-206ENST00000415148 NEUROG2Q9H2A3 272 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms