RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 IFFO1Q0D2I5 559 aa6.29□□□□□ -1.4
CCDC88A-203ENST00000412148 WLSQ5T9L3 541 aa6.29□□□□□ -1.4
CCDC88A-203ENST00000412148 C3orf67Q6ZVT6 689 aa6.29□□□□□ -1.4
CCDC88A-203ENST00000412148 SLF2Q8IX21 1173 aa6.29□□□□□ -1.4
CCDC88A-203ENST00000412148 CDK5RAP3Q96JB5 506 aa6.29□□□□□ -1.4
CCDC88A-203ENST00000412148 NLRP3Q96P20 1036 aa6.29□□□□□ -1.4
CCDC88A-203ENST00000412148 CCT8L2Q96SF2 557 aa6.29□□□□□ -1.4
CCDC88A-203ENST00000412148 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.29□□□□□ -1.47e-12■□□□□ 8.9
CCDC88A-203ENST00000412148 FAM114A2Q9NRY5 505 aa6.29□□□□□ -1.4
CCDC88A-203ENST00000412148 BMP2KQ9NSY1 1161 aaPredicted RBP6.29□□□□□ -1.4
CCDC88A-203ENST00000412148 NARFQ9UHQ1 456 aa6.29□□□□□ -1.4
CCDC88A-203ENST00000412148 NFU1Q9UMS0 254 aa6.29□□□□□ -1.4
CCDC88A-203ENST00000412148 GOLGA6L10A6NI86 522 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 PGRMC1O00264 195 aaKnown RBP6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 CHUKO15111 745 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 NKRFO15226 690 aaKnown RBP eCLIP6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 PPFIA2O75334 1257 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 NUDT17P0C025 328 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 IL1R1P14778 569 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 CDK8P49336 464 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 SETQ01105 290 aaPredicted RBP6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 SLC7A5Q01650 507 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 EVX2Q03828 476 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 RPS6KA1Q15418 735 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 SLC15A2Q16348 729 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 ASIC2Q16515 512 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 MAATS1Q7Z4T9 603 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 VTI1AQ96AJ9 217 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 TLCD1Q96CP7 247 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 HES6Q96HZ4 224 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 EYA3Q99504 573 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 METTL14Q9HCE5 456 aaKnown RBP6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 SUGT1Q9Y2Z0 365 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 UTP18Q9Y5J1 556 aaKnown RBP eCLIP6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 UBE4BO95155 1302 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 A0A087X0T9 212 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 A0A0G2JS52 829 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 PNMA6FA0A0J9YX94 578 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 GMNCA6NCL1 334 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 GCOM1H8Y6P7 765 aaPredicted RBP6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 PDXKO00764 312 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 RAD51CO43502 376 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 DNAJC8O75937 253 aaPredicted RBP6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 KRT14P02533 472 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 GSTA1P08263 222 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 FAM153BP0C7A2 387 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 FAM228BP0C875 321 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 MYZAPP0CAP1 466 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 PDHBP11177 359 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 GUCY2DQ02846 1103 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 GABPAQ06546 454 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 PDCLQ13371 301 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 XRCC4Q13426 336 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 NBPF9Q3BBW0 867 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 FAM153CQ494X1 144 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 SH3RF3Q8TEJ3 882 aaPredicted RBP6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 CRYGNQ8WXF5 182 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 TAF4BQ92750 862 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 KCNMB3Q9NPA1 279 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 PANK4Q9NVE7 773 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 FAM153AQ9UHL3 310 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 PLAAQ9Y263 795 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 NRXN2Q9P2S2 1712 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 USP17L3A6NCW0 530 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 USP17L4A6NCW7 530 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 SART1O43290 800 aaKnown RBP6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 FLOT1O75955 427 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 HSPA6P17066 643 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 MUTP22033 750 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 RFX1P22670 979 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 BRD2P25440 801 aaKnown RBP6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 HSD17B3P37058 310 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 ERVK-9P63128 1117 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 ZNF844Q08AG5 666 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 KLHL30Q0D2K2 578 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 UAP1Q16222 522 aaPredicted RBP6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 KIAA0753Q2KHM9 967 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 USP17L1Q7RTZ2 530 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 TPCN2Q8NHX9 752 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 CCDC26Q8TAB7 109 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 SNX29Q8TEQ0 813 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 HAS1Q92839 578 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 PGM2Q96G03 612 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 NAP1L3Q99457 506 aaPredicted RBP6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 SYT11Q9BT88 431 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 MKNK1Q9BUB5 465 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 TRAIPQ9BWF2 469 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 CNOT7Q9UIV1 285 aaKnown RBP6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 NAGPAQ9UK23 515 aa6.28□□□□□ -1.4
CCDC88A-203ENST00000412148 ZNFX1Q9P2E3 1918 aaKnown RBP6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 GOLGA6L7A0A1B0GV03 622 aa6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 FAM187AA6NFU0 413 aa6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 CETN3O15182 167 aa6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 NCK2O43639 380 aa6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 SLC37A4O43826 429 aa6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 KIF1CO43896 1103 aaKnown RBP6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 KLRK1P26718 216 aa6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 TXKP42681 527 aa6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 LIG3P49916 1009 aa6.27□□□□□ -1.41
CCDC88A-203ENST00000412148 CDR1P51861 262 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms